Bhi05G001749 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001749
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr5: 62177771 .. 62178118 (-)
RNA-Seq Expression	Bhi05G001749
Synteny	Bhi05G001749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGGTAGCCGGTCAAGGACAGGTTGTGCAACCATCTGCCCCTGTTTTTTCTGATATGTCTGAATAGATCACTACTCCAAAGAAGATTTATGGTTATCAAAAAGATTCAAACACCAATGCAGGGGAGGTGCTGATTGCTTGGAAAGGACTACCCTCACATGAAGTTACTTGGGAATCGGTTACTGATTTTCAACTTGAAGACAAGTTAGTTTTAGAAGGGGAAGGTAATGTTAGGCCACCTGTTATCTATCAGTATGTACGAAAGAATAGAAATGGTAAGATAGTTACTCGGGAGTTGGGGGAATCAACCAATAGTAAGGATGATTATTCACAAGTCAGTTAG

mRNA sequence

ATGACGAAGGTAGCCGGTCAAGGACAGATCACTACTCCAAAGAAGATTTATGGTTATCAAAAAGATTCAAACACCAATGCAGGGGAGGTGCTGATTGCTTGGAAAGGACTACCCTCACATGAAGTTACTTGGGAATCGGTTACTGATTTTCAACTTGAAGACAAGTTAGTTTTAGAAGGGGAAGGTAATGTTAGGCCACCTGTTATCTATCAGTATGTACGAAAGAATAGAAATGGTAAGATAGTTACTCGGGAGTTGGGGGAATCAACCAATAGTAAGGATGATTATTCACAAGTCAGTTAG

Coding sequence (CDS)

ATGACGAAGGTAGCCGGTCAAGGACAGATCACTACTCCAAAGAAGATTTATGGTTATCAAAAAGATTCAAACACCAATGCAGGGGAGGTGCTGATTGCTTGGAAAGGACTACCCTCACATGAAGTTACTTGGGAATCGGTTACTGATTTTCAACTTGAAGACAAGTTAGTTTTAGAAGGGGAAGGTAATGTTAGGCCACCTGTTATCTATCAGTATGTACGAAAGAATAGAAATGGTAAGATAGTTACTCGGGAGTTGGGGGAATCAACCAATAGTAAGGATGATTATTCACAAGTCAGTTAG

Protein sequence

MTKVAGQGQITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTDFQLEDKLVLEGEGNVRPPVIYQYVRKNRNGKIVTRELGESTNSKDDYSQVS

Homology

[Close]

BLAST of Bhi05G001749 vs. ExPASy TrEMBL
Match: A0A5D3BTP5 (Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00140 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.3e-15
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 10  ITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTD-------FQLEDKLVLEGEG 69
           IT P+++Y Y+K+  T   EVLI+WKGLP HE TWES TD       F LEDK+ LE E 
Sbjct: 102 ITQPEEVYSYRKNPATREWEVLISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEEES 161

Query: 70  NVRPPVIYQYVRKNRNGKIVTRELGESTNSKDDY 97
           + RPP+++ Y RKN+  K  T ELG  T+ ++D+
Sbjct: 162 DARPPILFTYHRKNKK-KHETNELG--TSGREDH 192

[Close]

BLAST of Bhi05G001749 vs. ExPASy TrEMBL
Match: A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 10  ITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTD-------FQLEDKLVLEGEG 69
           IT P+++YGY+K+ +T   E LI+WKGLP HE TWES TD       F LEDK+ LE E 
Sbjct: 180 ITQPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEEES 239

Query: 70  NVRPPVIYQYVRKNRNGKIVTRELGESTNSKDDYS 98
           + RPP+++ Y RKN+  K  T E GE T+ K+D++
Sbjct: 240 DARPPILFTYHRKNKK-KHETNE-GE-TSGKEDHN 271

[Close]

BLAST of Bhi05G001749 vs. ExPASy TrEMBL
Match: A0A5D3C5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00350 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 10   ITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTD-------FQLEDKLVLEGEG 69
            IT P+++YGY+K+ +T   E LI+WKGLP HE TWES TD       F LEDK+ LE E 
Sbjct: 1571 ITQPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEEES 1630

Query: 70   NVRPPVIYQYVRKNRNGKIVTRELGESTNSKDDYS 98
            + RPP+++ Y RKN+  K  T E GE T+ K+D++
Sbjct: 1631 DARPPILFTYHRKNKK-KHETNE-GE-TSGKEDHN 1662

[Close]

BLAST of Bhi05G001749 vs. ExPASy TrEMBL
Match: A0A5A7UAE4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001550 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 10   ITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTD-------FQLEDKLVLEGEG 69
            IT P+++YGY+K+ +T   E LI+WKGLP HE TWES TD       F LEDK+ LE E 
Sbjct: 1571 ITQPEEVYGYRKNPSTREWEALISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEEES 1630

Query: 70   NVRPPVIYQYVRKNRNGKIVTRELGESTNSKDDYS 98
            + RPP+++ Y RKN+  K  T E GE T+ K+D++
Sbjct: 1631 DARPPILFTYHRKNKK-KHETNE-GE-TSGKEDHN 1662

[Close]

BLAST of Bhi05G001749 vs. ExPASy TrEMBL
Match: A0A5A7TJU9 (Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00350 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 10  ITTPKKIYGYQKDSNTNAGEVLIAWKGLPSHEVTWESVTD-------FQLEDKLVLEGEG 69
           IT P+++Y Y+K+  T   EVLI+WKGLP HE TWES TD       F LEDK+ LE E 
Sbjct: 133 ITQPEEVYSYRKNPATREWEVLISWKGLPPHEATWESCTDMKYQFPEFHLEDKVDLEEES 192

Query: 70  NVRPPVIYQYVRKNRNGKIVTRELGES 90
           + RPP+++ Y RKN+  K  T E+G S
Sbjct: 193 DARPPILFTYHRKNKK-KHETNEVGTS 218

The following BLAST results are available for this feature:

BLAST of Bhi05G001749 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001749 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTP5	7.3e-15	48.94	Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3DM31	1.2e-14	49.47	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5N7	1.2e-14	49.47	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UAE4	1.2e-14	49.47	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TJU9	1.6e-14	50.57	Soluble inorganic pyrophosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 11..84 score: 8.865101
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 9..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001749	Bhi05M001749	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity