Bhi05G001733 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001733
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Cystathionine beta-lyase family protein
Location	chr5: 61727084 .. 61727321 (+)
RNA-Seq Expression	Bhi05G001733
Synteny	Bhi05G001733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATGACGAAGCTGGAGGATGTAAGGCACTTGACATCGCTTTTGCTGAAATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGGTTTCCAGCAGCTGTTAACTGTATATTTATGTTCAGAAGTAATTGCCAAGTTTGGTGTTTATGATTTTTCTACCATCAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTGCGCTTCTGAGGCCAGTGGATGAGGTACAACTTA

mRNA sequence

GTCATGACGAAGCTGGAGGATGTAAGGCACTTGACATCGCTTTTGCTGAAATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTGCGCTTCTGAGGCCAGTGGATGAGGTACAACTTA

Coding sequence (CDS)

GTCATGACGAAGCTGGAGGATGTAAGGCACTTGACATCGCTTTTGCTGAAATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTGCGCTTCTGAGGCCAGTGGATGAGGTACAACTTA

Protein sequence

HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEVQL

Homology

[Close]

BLAST of Bhi05G001733 vs. ExPASy Swiss-Prot
Match: P94479 (Uncharacterized protein YnbB OS=Bacillus subtilis (strain 168) OX=224308 GN=ynbB PE=4 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 6   GCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           G   L+  +A++ G E+ +VR Q  SGTHAI+ ALF +LRP DE+
Sbjct: 66  GRDTLESIYADVFGGEAGLVRPQIISGTHAISIALFGVLRPGDEL 110

[Close]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL
Match: A0A2P5D5G6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_261900 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           HDEAGG +ALD+AFAEIVGAESAIVRSQFFSGTHAITCALFA LRP DE+
Sbjct: 100 HDEAGGREALDLAFAEIVGAESAIVRSQFFSGTHAITCALFAFLRPGDEL 149

[Close]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL
Match: A0A5A7SZV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001670 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.5e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           HDEAGG +ALD AFAEIVGAESAIVRSQFFSGTHAITCALFALLRP DE+
Sbjct: 99  HDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDEL 148

[Close]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL
Match: A0A6J1IFW4 (uncharacterized protein LOC111476877 OS=Cucurbita maxima OX=3661 GN=LOC111476877 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.5e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           HDEAGG +ALD AFAEIVGAESAIVRSQFFSGTHAITCALFALLRP DE+
Sbjct: 97  HDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDEL 146

[Close]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL
Match: A0A6A4NYG2 (Putative methionine gamma-lyase OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0134451 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.5e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           HDEAGG +ALD AFAEIVGAESAIVRSQFFSGTHAITCALFALLRP DE+
Sbjct: 97  HDEAGGREALDQAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDEL 146

[Close]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL
Match: A0A2K3PAY5 (Aluminum resistance protein OS=Trifolium pratense OX=57577 GN=L195_g009081 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.5e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   HDEAGGCKALDIAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPVDEV 51
           HDEAGG +ALD AFAEIVGAESAIVRSQFFSGTHAITCALFALLRP DE+
Sbjct: 90  HDEAGGREALDQAFAEIVGAESAIVRSQFFSGTHAITCALFALLRPGDEL 139

The following BLAST results are available for this feature:

BLAST of Bhi05G001733 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001733 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94479	3.4e-05	48.89	Uncharacterized protein YnbB OS=Bacillus subtilis (strain 168) OX=224308 GN=ynbB...	[more]

BLAST of Bhi05G001733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5D5G6	6.5e-15	88.00	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_261900 PE=4 SV...	[more]
A0A5A7SZV8	8.5e-15	90.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IFW4	8.5e-15	90.00	uncharacterized protein LOC111476877 OS=Cucurbita maxima OX=3661 GN=LOC111476877...	[more]
A0A6A4NYG2	8.5e-15	90.00	Putative methionine gamma-lyase OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0134451 P...	[more]
A0A2K3PAY5	8.5e-15	90.00	Aluminum resistance protein OS=Trifolium pratense OX=57577 GN=L195_g009081 PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009651	Putative methionine gamma-lyase	PFAM	PF06838	Met_gamma_lyase	coord: 6..50 e-value: 1.3E-13 score: 50.3
IPR009651	Putative methionine gamma-lyase	PANTHER	PTHR46658	FAMILY NOT NAMED	coord: 1..50
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	3.40.640.10		coord: 1..52 e-value: 2.0E-12 score: 48.7
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 5..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001733	Bhi05M001733	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0003824	catalytic activity