Bhi05G001457 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001457
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein translocase complex, SecE/Sec61-gamma subunit
Location	chr5: 55027931 .. 55029004 (+)
RNA-Seq Expression	Bhi05G001457
Synteny	Bhi05G001457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGCTTCTGCACTTGGGGCTAATCCTATTGGTTAATCCACTTTTCTCTCTCATAGTATTTTTGTTTGTTTGTTTAAGTATCTTTTGGTCCTCAAAAACTCGTTTCATTTTAGGTACGGTTTGTATTCCTCAGTCCAAGGAACCGTTCCATGTTCTACATTACAACACAGCAAGATTCAACAAGTCCACTATCTTGCAGAGACTGCACACAAGGGTACTTTCTACTCATTTTAAACTTTGAATTTGATTTCAGTTATAATCTGATCATTTCAAATTTTCAATTGTTAGATTTCTAAAAGGACTGGACATCATGTCTATGCCGGGAGAATGGGCTTTAACCATGCTGCATCGGGACAAGATAATCAGCAACTGAGTTTTAATGATGAATGGCCTCCAGAACCTTTCTTCTTGAGTCTAATTAAAGAAACCGTTTGGTAATCTTTCGCGGCTCTTTCTCCCGTTCTTATTCGTAATGAATGTTGGACATTGAAGATTAGAACTGGTTTTAGTTCTACAATCACTTGGTTGTATTTCTGGAGATATATTTGCCCTGGTCTGCTTATGCTAATGTGCCCCATATCTACACTTGAATCTGGACACTGAAACGGTGTTTGTTATATTGCATTTTTAAAGATGATTAGTACGTTTTGTTCATTCAAAAAAAGTAATGAATTTTGGATCATCATGTGTAGGATGGTTTTGTTTTGAACTTTAGGGGATTGAGATCGTTGTTAATATTTCTGGCTGAGCAGCCCAGTCAACTGAAGTACATTGAATGGCCTAGCTTCCAAAGCACGGTATGGAGGCAAGATTAGTATGTTAAATATTTCATGTGCATTACCTTCTTGTAGTTTGTAAGATTTATATTTGATAAAATATTTTAATTCATTATGGGAATTCTCTCAATATTCTCTTTGAAATTTGGCTTTTATTTTGAATTCAATTCAATTTTGTGCAGCTGAAGACTGCCACGTTAGCTCTCGTTCTCGTTGCTTTGTTGATCGTAGCACTCTCATCGGTGGACTCGGCGCTCAGCTACATTTTGACCTTATTTCTCAGAAGAACTTC

mRNA sequence

ATGGTGATCGCTTCTGCACTTGGGGCTAATCCTATTGGTACGGTTTGTATTCCTCAGTCCAAGGAACCGTTCCATGTTCTACATTACAACACAGCAAGATTCAACAAGTCCACTATCTTGCAGAGACTGCACACAAGGATTTCTAAAAGGACTGGACATCATGTCTATGCCGGGAGAATGGGCTTTAACCATGCTGCATCGGGACAAGATAATCAGCAACTGAGTTTTAATGATGAATGGCCTCCAGAACCTTTCTTCTTGAGTCTAATTAAAGAAACCGTTTGGGGATTGAGATCGTTGTTAATATTTCTGGCTGAGCAGCCCAGTCAACTGAAGTACATTGAATGGCCTAGCTTCCAAAGCACGCTGAAGACTGCCACGTTAGCTCTCGTTCTCGTTGCTTTGTTGATCGTAGCACTCTCATCGGTGGACTCGGCGCTCAGCTACATTTTGACCTTATTTCTCAGAAGAACTTC

Coding sequence (CDS)

ATGGTGATCGCTTCTGCACTTGGGGCTAATCCTATTGGTACGGTTTGTATTCCTCAGTCCAAGGAACCGTTCCATGTTCTACATTACAACACAGCAAGATTCAACAAGTCCACTATCTTGCAGAGACTGCACACAAGGATTTCTAAAAGGACTGGACATCATGTCTATGCCGGGAGAATGGGCTTTAACCATGCTGCATCGGGACAAGATAATCAGCAACTGAGTTTTAATGATGAATGGCCTCCAGAACCTTTCTTCTTGAGTCTAATTAAAGAAACCGTTTGGGGATTGAGATCGTTGTTAATATTTCTGGCTGAGCAGCCCAGTCAACTGAAGTACATTGAATGGCCTAGCTTCCAAAGCACGCTGAAGACTGCCACGTTAGCTCTCGTTCTCGTTGCTTTGTTGATCGTAGCACTCTCATCGGTGGACTCGGCGCTCAGCTACATTTTGACCTTATTTCTCAGAAGAACTTC

Protein sequence

MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRMGFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT

Homology

[Close]

BLAST of Bhi05G001457 vs. TAIR 10
Match: AT4G38490.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 58  GRMGFNHA-ASGQDNQQLSFNDEW-------PPEPFFLSLIKETVWGLRSLLIFLAEQPS 117
           GR+   H   SG      S  + W         EP +LSL+++ VW  RSLL F+AEQPS
Sbjct: 44  GRVSHKHVRGSGTVGSVGSARESWSSHKKLPEEEPLWLSLLRDMVWSTRSLLSFMAEQPS 103

Query: 118 QLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLFLRR 158
           QLKYIEWP+F STLKTATL+L LVA+ IVALSSVD+AL YIL L LR+
Sbjct: 104 QLKYIEWPTFASTLKTATLSLCLVAVFIVALSSVDAALCYILALILRK 151

[Close]

BLAST of Bhi05G001457 vs. ExPASy TrEMBL
Match: A0A0A0K1C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014540 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 131/158 (82.91%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 1   MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRM 60
           MVI S LG   IG +C+PQSKEP+HVL YNT R NKS++ QRLHTRISKR+GHH+YAGRM
Sbjct: 1   MVITSTLGTPHIGIICLPQSKEPYHVLQYNTTRLNKSSLFQRLHTRISKRSGHHLYAGRM 60

Query: 61  GFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQ 120
           GFNHAA  Q+ QQ SFNDE PPEPFFLSLIKET WGLRSLLIFL EQPSQLKYIEWPSFQ
Sbjct: 61  GFNHAALEQNYQQPSFNDELPPEPFFLSLIKETFWGLRSLLIFLVEQPSQLKYIEWPSFQ 120

Query: 121 STLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT 159
           STLKTATLALVLVALLIVALSSVDSALSY+LTL LRRT
Sbjct: 121 STLKTATLALVLVALLIVALSSVDSALSYVLTLILRRT 158

[Close]

BLAST of Bhi05G001457 vs. ExPASy TrEMBL
Match: A0A1S3BJG9 (uncharacterized protein LOC103490269 OS=Cucumis melo OX=3656 GN=LOC103490269 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.6e-62
Identity = 128/158 (81.01%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRM 60
           MVI S LG + IG +C+PQ K  +HVL YN  R NKS++ QRLHTRISKR+G H+YAGRM
Sbjct: 1   MVITSTLGTHHIGIICLPQPK--YHVLRYNATRLNKSSLFQRLHTRISKRSGQHLYAGRM 60

Query: 61  GFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQ 120
           GFNHAASGQ+ QQ SFNDEWP EPFFLSLIKET WGLRSLLIFL EQPSQLKYIEWPSFQ
Sbjct: 61  GFNHAASGQNYQQPSFNDEWPQEPFFLSLIKETFWGLRSLLIFLVEQPSQLKYIEWPSFQ 120

Query: 121 STLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT 159
           STLKTATLALVLVALLIVALSSVDSALSY+LTL LRRT
Sbjct: 121 STLKTATLALVLVALLIVALSSVDSALSYVLTLLLRRT 156

[Close]

BLAST of Bhi05G001457 vs. ExPASy TrEMBL
Match: A0A5A7SIK1 (Protein translocase complex, SecE/Sec61-gamma subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00250 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.6e-62
Identity = 128/158 (81.01%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRM 60
           MVI S LG + IG +C+PQ K  +HVL YN  R NKS++ QRLHTRISKR+G H+YAGRM
Sbjct: 1   MVITSTLGTHHIGIICLPQPK--YHVLRYNATRLNKSSLFQRLHTRISKRSGQHLYAGRM 60

Query: 61  GFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQ 120
           GFNHAASGQ+ QQ SFNDEWP EPFFLSLIKET WGLRSLLIFL EQPSQLKYIEWPSFQ
Sbjct: 61  GFNHAASGQNYQQPSFNDEWPQEPFFLSLIKETFWGLRSLLIFLVEQPSQLKYIEWPSFQ 120

Query: 121 STLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT 159
           STLKTATLALVLVALLIVALSSVDSALSY+LTL LRRT
Sbjct: 121 STLKTATLALVLVALLIVALSSVDSALSYVLTLLLRRT 156

[Close]

BLAST of Bhi05G001457 vs. ExPASy TrEMBL
Match: A0A6J1EK97 (uncharacterized protein LOC111435124 OS=Cucurbita moschata OX=3662 GN=LOC111435124 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.9e-58
Identity = 127/158 (80.38%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRM 60
           MVIASALGAN IG   +P S  PFHV  YNTAR NK+ I Q L TRIS+R G H+YA RM
Sbjct: 73  MVIASALGANHIGMASLPHSNRPFHV-RYNTARLNKANIFQGLPTRISRR-GGHLYADRM 132

Query: 61  GFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQ 120
           GFNHAASG+DNQQL FNDE PPEPFFL +IKETVWGLRSL IFLAEQPSQLKYIEWPSFQ
Sbjct: 133 GFNHAASGRDNQQLRFNDELPPEPFFLGIIKETVWGLRSLFIFLAEQPSQLKYIEWPSFQ 192

Query: 121 STLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT 159
           STLKTAT ALVLVALLIVALSSVDS LSYILT  LRRT
Sbjct: 193 STLKTATFALVLVALLIVALSSVDSVLSYILTFILRRT 228

[Close]

BLAST of Bhi05G001457 vs. ExPASy TrEMBL
Match: A0A6J1C3M0 (uncharacterized protein LOC111008049 OS=Momordica charantia OX=3673 GN=LOC111008049 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.5e-57
Identity = 120/158 (75.95%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVIASALGANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRM 60
           M IASALGAN IG +C P  K+P H+LH NT RFNKS   Q+L   IS+R+G H+YAGRM
Sbjct: 1   MAIASALGANHIGMICSPHPKQPLHILHINTPRFNKSNDFQKLPKGISRRSG-HLYAGRM 60

Query: 61  GFNHAASGQDNQQLSFNDEWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQ 120
            FNHAASG++N QL+FN+E+PPEPF LSLI+E +WGLRSLLIFL EQPSQLKYIEWPSFQ
Sbjct: 61  SFNHAASGRENHQLNFNEEYPPEPFMLSLIREGIWGLRSLLIFLVEQPSQLKYIEWPSFQ 120

Query: 121 STLKTATLALVLVALLIVALSSVDSALSYILTLFLRRT 159
           STLKTATL LVLVALLIVALSSVDSALSYILTL LRR+
Sbjct: 121 STLKTATLTLVLVALLIVALSSVDSALSYILTLVLRRS 157

The following BLAST results are available for this feature:

BLAST of Bhi05G001457 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38490.1	1.9e-22	56.48	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

BLAST of Bhi05G001457 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi05G001457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1C8	1.6e-64	82.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014540 PE=3 SV=1	[more]
A0A1S3BJG9	5.6e-62	81.01	uncharacterized protein LOC103490269 OS=Cucumis melo OX=3656 GN=LOC103490269 PE=...	[more]
A0A5A7SIK1	5.6e-62	81.01	Protein translocase complex, SecE/Sec61-gamma subunit OS=Cucumis melo var. makuw...	[more]
A0A6J1EK97	4.9e-58	80.38	uncharacterized protein LOC111435124 OS=Cucurbita moschata OX=3662 GN=LOC1114351...	[more]
A0A6J1C3M0	2.5e-57	75.95	uncharacterized protein LOC111008049 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038379	SecE superfamily	GENE3D	1.20.5.1030	Preprotein translocase secy subunit	coord: 97..154 e-value: 7.6E-6 score: 27.6
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 103..155 e-value: 6.0E-8 score: 32.5
None	No IPR available	PANTHER	PTHR37247	TRANSMEMBRANE PROTEIN	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001457	Bhi05M001457	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006605	protein targeting
biological_process	GO:0071806	protein transmembrane transport
biological_process	GO:0090351	seedling development
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009528	plastid inner membrane
cellular_component	GO:0016020	membrane