Bhi05G001126 (gene) Wax gourd (B227) v1

Overview
NameBhi05G001126
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Description30S ribosomal protein S31, mitochondrial
Locationchr5: 45473426 .. 45476645 (+)
RNA-Seq ExpressionBhi05G001126
SyntenyBhi05G001126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTAAGCTCCCTTTTGCCTCCTCCGTTACAGTTGGGCTCTGAACCAAATCCTGAAAAAAGGAGGAAAAAATGGCGATGGCGCAGTTATGCGGCGCATTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGCCGAAGGACTGGTGCCCATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCATACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGATTTGAACCGCTTTTGTTTCCTTCTGATCGTATAAAACTTTCATGATTTGTGTAATTCTGAAAAAGAATCAAGGTTTTCTCGAAGTTTAGGGTTTATGTCAAGTCAAGATGGATTTAAGCGAAATTGAAATTGATCTATACTGATTAATCGTCTTGCTGGTATGCTTGATTTCATTTTTTTTCCGGTCTGGAATTGGAATATGGAGCTTTGTAGCCGAATTTTCCTTCGAATGATATCTGGAAAATTTTCTAGAAAGGATGCATTATTTGGAGAAAATAGTAGATTCTGTAAAATGGATCCGATTTTATCATACTGAATCTGCAATTTAGGGTTCATCAGCCTGCAACTTGGTGATTTATTTGAGAAGCTTGAAATTTCAAATGTCGTTTGAATTTTGTTTAGATAGATTGTTAAAATCTTCTAAATTCTAACTATAAATAAAAATAAAGATGACAAATACTAATATTATTCCTTAATTGACATTCCAAAATAAAATAACGATAATAAAAATAAAAATAAAACAAATACCTAATCATCAAACTAAACATGAGATTGGCTCAATTTCGTTTTTTTTTTACATACAGCTACACTCTGAATATTCATGGAAATAGGAGGTGGGAACGGAAATGATTCTATCACGGAATGAGAATATTTTATTCTAAGTCATTTCATATTTCTTATAACTAATCAAATAGATAAGTTTTCTCAATTTTTAATGGTTTTTTTCTCTCATACTTTTTATCGTTTTATTTTATTGATTTTTTTTCTGGTTGATATTGGTTAATTTATTTATTTTTATAAATATATTTAAATTAAATTTATAATTGACATATATATTTAATTTTATTAATAATAATATTAATATAATAATTTATACTATTAATATAAAAAACCATAATCTTTTTAAAAAATATGAATAACCATAATTGTTGCTTAAATCCTTTTTTATTGGTATATATTATTTATTAAAATTATTAGTTCATCTTTAAAAAATATTAATTAATTAATTAATAATAAAATAAGTTAACTTTTTTCAATTGAACAATCTTGTATATTTGTACTTCTAGTATTAATCTATAATCATAGTTATTTTCTTTAAATTATACAAAAAAAAAAAAAAAAAAAAAAAACATTGCTTGATGATTTAAAATCAATTATTTAATATCAACTTCTTTTGTATATATATAAGATTTATAATTGATAATTAACTCTTCAATTAACAAAACTATAGGAAAAAGAAGATATTTATATTAATTACTAATATATTTTTTTAATAAAATTGATAATATAAATGTACAATATAAAAAATTTAATTGATAATAAATATATTAAACTAGAGGGTGAGTGAGTAAATTTAGTTAAATTTTAATGACTTAAAATTGATTTAAAAACATAATGTAATAAAAATAAATTAAATAAAAAATAATTATTGAAATTAATTTTAATGAATTTTATGCTTTATAACAACATAAAAGCATAAAAAGTATAACACATTCTTAGACTTTCCATTCCCATACATAATAGAAAACATTTCTAGAAGAAGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTCGTTGCCAAAATCATAGAATAAAAAATTGTACAATAGACCAAAGTTAGAAGTTTGTGAGATTTATGAGGTGGATAATAAAATTGACTAGAGTAGATGTAGACCAATTTTGGTCGAATTGGTGTTCTTATATCTTTTCTTTATTTGCTGCATTTGTTTTTGCTCTATTTTCTTCAACTTTATGGACTTGCAAGGGCATTGTTTATTTCTATATCTTTGCGTTAAAATGGATTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGAAATTGGACTTCCAATCAATCCACGATGGGAAGATGGAGGAAGATGAGAAAATAATTCTAAATGATTTTTTTCTTTTTATAAAAAATTTACTTTTTAATCTATTTGTTGGGTAATCAAATATAAACAATATGTCAGAACATCAACCAGAGTGTATTTTGCCAAAAAAAAAATTATAATTGAGCTTTTTATTAATTTTTAATACATATACAATAATTTATTATCACTAATATAATTTTCTACCGGACTTATAAGGTAAAATAGTAGAATTTTGGTGCACTCAACTTCTCAAAGAAAATCTTCAATTTTATTAATGAATTCAAATTATTAAGGAAGCCTTGTTTATAGGCTATTACAGAGGGGTTAGAGAAGGGTTTAGGGTAACTAACTATGGTTACAACATAATTTTACAAGTTAACAGAAACAGTGACTATCTTTAGTTTAAAAGAAAAGAGGTTAACTTAAAGAACCGGCCAAGATTCTAACCAGAATACTTCAACTAAGACAAGACTCTTCAAGGATTGATCAAGATCCTTAAAAGACATTACATCAACGTTATACTTTCTTTTCATTTCCAGTGAATATCCATAGGAGAAATTTTAGTTTCTATGATTTCAAATTAATTTGTACAAGTAACTAGTACAACTAACTCTCTATTTACAACAACACCAACCAAAGGGCGGAAATCAGAGTCCCAAAAGATCCTATCATTCTTCTGAAATACAAAAGAATTAAACTCAACTACAACACGACTAATGTAGTGAGCGTTGCAATTCCCATCCTCATGACAGAAGTAGAATGACAGGAAGATCAATAACAACACCAGCTCGCTGATTTCATCGATGGAGTTTCTCGCTTCTATGAGGTCTATTGCCCAATGATTAATCAAATTTGTACTTTTGGCTAGTTCAAGTAGTGAATTACATGAATATGGAACAAAGTTTGTGTAAGCATGCTAAAAATCTCAAATTTCAACAGTTTTGGAAAGATGCTATAAAAAGGGCATGAAGCACAAGGATTAAAGAACGATACGTTCAAGGGAC

mRNA sequence

AGTTAAGCTCCCTTTTGCCTCCTCCGTTACAGTTGGGCTCTGAACCAAATCCTGAAAAAAGGAGGAAAAAATGGCGATGGCGCAGTTATGCGGCGCATTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGCCGAAGGACTGGTGCCCATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCATACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGTTTTGGAAAGATGCTATAAAAAGGGCATGAAGCACAAGGATTAAAGAACGATACGTTCAAGGGAC

Coding sequence (CDS)

ATGGCGATGGCGCAGTTATGCGGCGCATTAGCTAGGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGCCGAAGGACTGGTGCCCATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCATACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGTTTTGGAAAGATGCTATAAAAAGGGCATGA

Protein sequence

MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRIKDKIEFWKDAIKRA
Homology
[Close]
BLAST of Bhi05G001126 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPI----------LCGRGDKKTKKGKR 60
          MA  Q CGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

[Close]
BLAST of Bhi05G001126 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-05
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 26 SSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          S+ ++  +  + CGRGD+KT KGKRF  S+GNARP+ + K
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK 82

[Close]
BLAST of Bhi05G001126 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPI----------LCGRGDKKTKKGKR 60
          MA  Q CGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

[Close]
BLAST of Bhi05G001126 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-12
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0 

Query: 10 LARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKKIQRI 69
          LA       R  P+    ++AE    + CGRGDKKTK+GKRFKGSYGNARPK+EKKI+RI
Sbjct: 5  LAAAAAFVRRLVPARNPVISAEA-EAVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERI 64

Query: 70 KDKIE 75
          KD++E
Sbjct: 65 KDRVE 68

[Close]
BLAST of Bhi05G001126 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 13 GVMAAERRSPSLTSSMAAEGLVPIL-CGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          GV  +   + SL+SS++    +P++ CGRGD+KT KGKRF  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]
BLAST of Bhi05G001126 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.0e-04
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 26 SSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARPKKEKK 66
          S+ ++  +  + CGRGD+KT KGKRF  S+GNARP+ + K
Sbjct: 43 STSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKSK 82

[Close]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQ CGA+ARGV+AAERRSPSLTSSMA EGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

[Close]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQ CGA+ARGV+AAERRSPSLTSSMA EGLVPILCGRGDKKTK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

[Close]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAM Q CGA+ARGVMAAERRSPSLTSSMA EGLVPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match: A0A0A0K141 (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60
          MAMAQ  GA+ARGVMAAERRSPSLTSSMA EGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.8e-26
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 3  MAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARPKK 62
          MAQ CGALA+ VMAAERRSPSLTSSMA EGLVPILCGRGDKKTKKGK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIE 75
          EKKIQRIKDKIE
Sbjct: 61 EKKIQRIKDKIE 72

The following BLAST results are available for this feature:
BLAST of Bhi05G001126 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21290.11.2e-1554.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G38140.14.3e-0550.00plastid-specific ribosomal protein 4 [more]
BLAST of Bhi05G001126 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJU81.7e-1454.7630S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
P479096.0e-1258.4630S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
P479101.1e-0550.0030S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
O804396.0e-0450.0030S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3... [more]
BLAST of Bhi05G001126 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SX601.8e-2791.8930S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BI881.8e-2791.8930S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
A0A6J1F3E94.0e-2793.2430S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0K1411.2e-2691.8930S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006... [more]
A0A6J1GKP45.8e-2693.0630S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 26..65
e-value: 1.8E-10
score: 40.8
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 39..62
e-value: 1.2E-10
score: 39.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..63
NoneNo IPR availablePANTHERPTHR34550:SF330S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..75
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001126Bhi05M001126mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome