Bhi05G001102 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001102
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein RADIALIS-like 1
Location	chr5: 44290923 .. 44292157 (-)
RNA-Seq Expression	Bhi05G001102
Synteny	Bhi05G001102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCTTTCCACAAAAGACTTCCTTGGGCCATCTTTTCAAACCCCATTTGCTTTGTTTTGGAATTTTGAAGCTCTATATTATTAAAAAATAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTGATGATGTCAAACATATTGAATCTGGCAACGTCCCTTTTCCCTATCCATCCTCTAGTGATGATTTGCCAAGGAAAAGAGGTAATTTATAAGCTTTCGTCCTCGTCCAATATGACATTTTTGTTTCTAGTTTCTTGTTTAAGTTTATTTCTGTTTCTAGTTGCTTGTTTAAGTGTGGAATGAGGTAAATTGGTGTATGGTGACTTTCAGCTTGAAACTTTAAAAAATCTCAATCTCTTTTACGAAACACAAAAATAGTCAAATTTCTTTTATAATCATTTTTATTTCTCCCAAAAGTAACTCCTAACACACCCAAAAAATGGTTCACAATTGTTCAAGCTTGTTTCTTGTTTTTCATTTTTCAAAAACGTTTCAAAATTGTGGAGAAAGTTTTTGGAAACAACAAAATCAAACTTTCTTGTTTTATTTGTTTCTTCCATTTTTTTTTCAAAAACTAAATAAAATTATTATTCTATTTTTTGTACTTCTAATTTGCATAATAAATATTTAAATTTTAATATCTACTTTTTATGTCAAATTTCTACATTTTTAATTCAAAAATTCAAGGGTTGATTAAAATTATAATTAAATTCATCCTAACTCATCAACTTAATTGAAGAAAATAGTTACCAAATCCTTAAAAAAAATTATCAAACGTGTCTATTTTTCTTTAAAAAAATGAAAGAAGAAGAAATACAAAAAAGAAAAAAAAAAGTTACAATACGCAATTTCATTTTTCTTTATTAAAATGACACGACATGTACAAGAAACAAGAAACATTACCCAATGAGTTGAACTCTTTTATCACTTTCTCATGTATTAAGAATTCTCTACTAGTGAAGATGTTTTATTCAAATTTTATGTGCCAAATTAACTGATATTATGTCATACAAAGCCCCTTCTTGATTATTTATCCTTTTCTTTTTTCCACAGGATGAGTAAGAACAAGCTCTTCAATTGATATCTAGCTG

mRNA sequence

CTTTCCTTTCCACAAAAGACTTCCTTGGGCCATCTTTTCAAACCCCATTTGCTTTGTTTTGGAATTTTGAAGCTCTATATTATTAAAAAATAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTGATGATGTCAAACATATTGAATCTGGCAACGTCCCTTTTCCCTATCCATCCTCTAGTGATGATTTGCCAAGGAAAAGAGGATGAGTAAGAACAAGCTCTTCAATTGATATCTAGCTG

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTGATGATGTCAAACATATTGAATCTGGCAACGTCCCTTTTCCCTATCCATCCTCTAGTGATGATTTGCCAAGGAAAAGAGGATGA

Protein sequence

MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDDVKHIESGNVPFPYPSSSDDLPRKRG

Homology

[Close]

BLAST of Bhi05G001102 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-23
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 2  ASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDDV 61
          +SMSS  S +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFP 73
            IE+G+VPFP
Sbjct: 64 NSIENGHVPFP 74

[Close]

BLAST of Bhi05G001102 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-23
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 3  SMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDDVK 62
          SMSS+GS +WT  QNK FE+ALAVYDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPSSSDDLPRKR 85
           IE+G+VPFP Y +++ +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGR 87

[Close]

BLAST of Bhi05G001102 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-21
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS S   S++WT+ QNK FE+ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +L++D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPSSSDDLPRKRG 86
          + +IE   VP P   + D   + RG
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRG 85

[Close]

BLAST of Bhi05G001102 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS S    + WT  QNK FE+ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +L++D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE+G VP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Bhi05G001102 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-20
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS S    + WT  QNK FE+ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +L++D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE+G VP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 2  ASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDDV 61
          +SMSS  S +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFP 73
            IE+G+VPFP
Sbjct: 64 NSIENGHVPFP 74

[Close]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-22
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 3  SMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDDVK 62
          SMSS+GS +WT  QNK FE+ALAVYDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPSSSDDLPRKR 85
           IE+G+VPFP Y +++ +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGR 87

[Close]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-20
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS S   S++WT+ QNK FE+ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +L++D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPSSSDDLPRKRG 86
          + +IE   VP P   + D   + RG
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRG 85

[Close]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-19
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS    G   W+A +NK FE+ALAVYD+DTP+RW NVA+AV  +T EEVK+HY++L++D
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKHIESGNVPFP 73
          +K+IESG VPFP
Sbjct: 61 IKYIESGKVPFP 71

[Close]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MAS S    + WT  QNK FE+ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +L++D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE+G VP P
Sbjct: 61 LINIETGRVPLP 72

[Close]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL
Match: A0A6J1GK35 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MASMSS GSNAWT MQNK FEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLL D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPSSSDDLPRKRG 86
          VKHIESGNVPFPY +SSDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL
Match: A0A5D3D8F6 (Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00200 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MASMSSHGSNAWT MQNKTFEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYP--SSSDDLPRKRG 86
          VKHIESGNVPFPYP  SS DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL
Match: A0A1S3BHZ4 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MASMSSHGSNAWT MQNKTFEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYP--SSSDDLPRKRG 86
          VKHIESGNVPFPYP  SS DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL
Match: A0A6J1I517 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.9e-36
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MASMSS GSNAWT MQNK FEKALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLLL D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPSSSDDLPRKRG 86
          VKHIESGNVPFPY +SSDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYRNSSDDLPRKRG 85

[Close]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL
Match: A0A6J1C6U4 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60
          MASMSS GS+AWTAMQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL++D
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGNVPFPYPSSS-DDLPRKRG 86
          VKHIESG+VPFPY +S+ DD P KRG
Sbjct: 61 VKHIESGHVPFPYQTSNDDDFPTKRG 86

The following BLAST results are available for this feature:

BLAST of Bhi05G001102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.1e-23	69.01	RAD-like 1	[more]
AT2G21650.1	6.1e-23	61.45	Homeodomain-like superfamily protein	[more]
AT1G19510.1	3.4e-21	56.47	RAD-like 5	[more]
AT1G75250.1	2.2e-20	63.89	RAD-like 6	[more]
AT1G75250.2	2.2e-20	63.89	RAD-like 6	[more]

BLAST of Bhi05G001102 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.0e-22	69.01	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	8.6e-22	61.45	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q8GW75	4.7e-20	56.47	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q58FS3	2.3e-19	61.11	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	3.1e-19	63.89	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Bhi05G001102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK35	1.7e-36	92.94	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1	[more]
A0A5D3D8F6	2.2e-36	91.95	Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHZ4	2.2e-36	91.95	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1	[more]
A0A6J1I517	4.9e-36	91.76	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1	[more]
A0A6J1C6U4	1.1e-32	84.88	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 2.0E-6 score: 37.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 4.18874E-6 score: 37.9402
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 2.9E-21 score: 77.0
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 2..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001102	Bhi05M001102	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity