Bhi05G001027 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001027
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein TIC 214
Location	chr5: 41609185 .. 41609523 (-)
RNA-Seq Expression	Bhi05G001027
Synteny	Bhi05G001027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

mRNA sequence

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

Coding sequence (CDS)

ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTTCTTTAAGATCAAACAATTCCATTGAAACGGAGGAAATAAGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAATGAGGAAACAAAAGCAAAAATTCAGGACAAATGGGAACCGTTAACTTTAACTATTGACTGTGAATTCCTAAATGATTTTTGGATTGAAATTGAAAATTCGGTTTCTCTGTCGAAAGATGAGTAA

Protein sequence

MTGRNQEITPHVRNYRRSSLRSNNSIETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEETKAKIQDKWEPLTLTIDCEFLNDFWIEIENSVSLSKDE

Homology

[Close]

BLAST of Bhi05G001027 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-06
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPH+RNYR S LRSNNSIE   I
Sbjct: 332 MTGRNQEITPHMRNYRISPLRSNNSIELSMI 362

[Close]

BLAST of Bhi05G001027 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-06
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 1   MTGRNQEITPHVRNYRRSSLRSNNSIETEEI 32
           MTGRNQEITPH+RNYR S LRSNNSIE   I
Sbjct: 332 MTGRNQEITPHMRNYRISPLRSNNSIELSMI 362

[Close]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot
Match: Q4VZL0 (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 22  SNNSIETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           ++ + ET E  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE E+
Sbjct: 246 TSKTSETAETEESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKED 298

[Close]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot
Match: Q0G9Q4 (Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           +TEE  ESEEETDVEIE  SETKGTKQEQEGSTEED SPSLFSEE E+
Sbjct: 249 QTEEGWESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEKED 296

[Close]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot
Match: Q0ZIW0 (Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           ETEE  ESEEETDVEIE TSETKGTKQEQE STEED SPSLFSEE E+
Sbjct: 254 ETEERGESEEETDVEIERTSETKGTKQEQERSTEEDPSPSLFSEEKED 301

[Close]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot
Match: Q68RU8 (Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-09
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 9   TPHVRNYRRSSLRSNNSIE---TEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSP 68
           TP       S   ++  IE   TEE  ESEEETDVEIE  SETKG KQEQEGSTEED SP
Sbjct: 290 TPTTEERGESEEETDVEIETPTTEERGESEEETDVEIETASETKGAKQEQEGSTEEDPSP 349

Query: 69  SLFSEENEE 75
           SLFSEE E+
Sbjct: 350 SLFSEEKED 358

[Close]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-09
Identity = 38/47 (80.85%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENE 74
           ET E  E EEETDVEIE T ETKGTKQEQEGSTEED S SLFSEE E
Sbjct: 251 ETSETEEREEETDVEIETTPETKGTKQEQEGSTEEDPSSSLFSEEKE 297

[Close]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL
Match: A0A6H0EWY1 (Protein TIC 214 OS=Momordica sessilifolia OX=703387 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEETKAKIQDKWE 85
           ETEE  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE EE + + +++ E
Sbjct: 258 ETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEEEEEEEEEEEE 315

[Close]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL
Match: A0A1P8C7U3 (Protein TIC 214 OS=Cucumis x hytivus OX=442738 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-10
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 21  RSNNSIETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           +++ + ETEE  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE E+
Sbjct: 257 KTSETEETEETEESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKED 310

[Close]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL
Match: A0A6M3S424 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           ETEE  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE E+
Sbjct: 251 ETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKED 298

[Close]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL
Match: A0A6M3RWE9 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           ETEE  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE E+
Sbjct: 251 ETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKED 298

[Close]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL
Match: A0A6M3RU58 (Protein TIC 214 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 27  ETEEIRESEEETDVEIEITSETKGTKQEQEGSTEEDTSPSLFSEENEE 75
           ETEE  ESEEETDVEIE TSETKGTKQEQEGSTEEDTSPSLFSEE E+
Sbjct: 251 ETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKED 298

The following BLAST results are available for this feature:

BLAST of Bhi05G001027 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00890.1	4.0e-06	80.65	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	4.0e-06	80.65	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

BLAST of Bhi05G001027 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL0	1.4e-11	79.25	Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2	[more]
Q0G9Q4	4.5e-10	83.33	Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1	[more]
Q0ZIW0	4.5e-10	85.42	Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1	[more]
Q68RU8	4.9e-09	63.77	Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1	[more]
Q14FA0	6.5e-09	80.85	Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1	[more]

BLAST of Bhi05G001027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EWY1	4.6e-10	77.59	Protein TIC 214 OS=Momordica sessilifolia OX=703387 GN=ycf1 PE=3 SV=1	[more]
A0A1P8C7U3	7.9e-10	79.63	Protein TIC 214 OS=Cucumis x hytivus OX=442738 GN=ycf1 PE=3 SV=1	[more]
A0A6M3S424	2.3e-09	89.58	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6M3RWE9	2.3e-09	89.58	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6M3RU58	2.3e-09	89.58	Protein TIC 214 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=ycf1 PE=3 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 24..82 e-value: 1.4E-14 score: 53.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001027	Bhi05M001027	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane