Bhi05G000991 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000991
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	GRF-type domain-containing protein
Location	chr5: 40473048 .. 40478593 (+)
RNA-Seq Expression	Bhi05G000991
Synteny	Bhi05G000991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCCTAAAATTATCCATATTTTCAACCCCATTGAAAATTAAAAGTAACTCGAGGGATAAGATTTGTCATTATCAACAGAAAAGAGAGAGAGAGAAAATACAAAACAATGAAGATTCCGATCATCTTAGGAAGTGCTTTTGGTTTGGCCCCCACACGATAAGCTTCAAACTCCTCGATCTCTTCATTTACGGACGCTCGTCGTTCGTTGTATCAATGCAACGGCAATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAATTTACCAACCACGCTCTTTTAAGTATTCCACTCTGTTCCCTTTTTCCTATTTGATTTCGAGAAGTTATCAGAATTTGGCATCGACTTTTTGTTCGCAATTTCTTCATTTCATTCGTTTGTTTAATAAATTTTCAATCTACACGAGAATTAGCAATGGATTTTTGTTGCTTTGAATTTTATCATTCGATGGGGGGGGGCACAATGAAAAATCTAATGCTCCTTGTTATATTTTTTTAGTTTTTGAAAATTAACCCTATAAATGTGACATATACCTCTAGATTTCTTGTTTGGCCATATTTTCAAAAAATAAGTCAAATTTTAAAATCTAAAAAAAAGTTTTTAAAATTTTATTTTTGTTTTTTAAAATTCACTAAGAATTCAACTCTTATGCTTAGAAAGATGCTAATCATGACAAGAAAATGTGAGAAAATAAACTTAATTTTCAAAAACCAAAAATTAAAATCGAAATGATTTTCAAACTGAGTCTTATAATAAGTGGTAGTTAAAAAAGTAACCCTTCTGGTTGTATTGTCCATGAGTTCGTTTAATTTAATAAGTTTTTCTTTCTCGTGCTTTAGGAATATCTTTATCAGTTCGATAATTATTGTTTTGGGTTTTTTTTATTAAATTTATTGGGGTTGCTGTCATGAAGAAAGCGGCTTTTTGAAAAGGAATAAGAAGTTTTTTCAGTATAATTTTAGGATTTTGAAAATGCTTTGGATTGAATTCTATTCTTTGCTTACTGCTGGTAAAAAATGAAAACCGTTTTTCTTTTTTTCTCTTGAGATTTTATTATTATCCCATGATGTCGATTGCTTTTATTATTGAACACGGATTTTATGAATGTAATGTTGAATTTGCGTTAATATAAATGTAGATTTCTTAACATATCCATTTGTTTGGTTCTTCTTTATGATTAACGTCGTGGTTGAGTTGTTCTTGGCATTGTTCTTAAAGAATTACCTTCTGGAGGTAGCTTCTGAGGTCAAACTGGAAAGAAACTCTTAATTCTGTTGTAGCAAAAATTGTCAGAAGATTTGGTTTTGCATATACAACTTAGTTTTCACCATCCCTGGATTAGGATTTTTTTGCTTGCAGCACCCCGATCACATGGCATATACACTTTTTCGAATATCTTTACAACCTCTATCTTTCGCTGTAATGATATGATGCTGCACGAATGCAACAATCTCTACACTCTTATCTAAAAAATGCAACAATCTCTACACCGTTGGACATTTGTGATACTTGCATAGAAATATGTGATACTACATTATAAATATGTGTTAGATTCATGTTTCAAGAAGTACAGAGGATATCCATCCAATCTTCAACGGATCTGTCGTGAGAGATGTGTTGTACGTGTACCTAGTACAGTATGTACAACATATATGTTCTGCTTCTGACAGGCCAAGTCAACTGGTTGTGTATTATCAAGCAAGTGAAGTTGACTTTAAATCATCTTATTTGATTGGTGAAGGTGATACTTCTAATATGCCATATCGGACAGCGTGAGGAGGAAAAAATGAACTATATAATCAATGAAATTCCAAAAAAATCGGTGATTCATGTGGTAGCTTGTGTTAGCATCTTGGTGGCGAGGGCTTCGGATGCTTAGAGATACTTTCTGGAGTCCTATTTTAAAGATCCTAAGGTTTTTATAATTCTATAATTTAAAACTTCTGTTTTCTTTTACAACTGGTCTTATGGTAGGCGAAACCTCGCCAGGGATTAGCAAAATCTCAGTTTTCAAAAAAGAGAATATAAGGCAAAAGTTTTGTAGCTTTTGTTTCAGTTTAGCTTAGTATTTGTATCCTTGTATTGTTTTTACTAAAATTTAGATGTGATGTTGTTAAACTATGTCATATTTACTAAGTTCAATTCTGCACATCCATCTAAACTTAGTATTTGATGTCCTTGTATTGTTCTTATTAGTTTTATAATACTTCTTCTTTGTAATTGTGTCTGATTTATTTTGAACTTTGAGAATACTTCAATGTCAAGTCATCTATCTTTCTTGCCCTTCTGATACTGGTTAGGATAGTAGTTTGTTTTTGGCTGATACTTTGTAGTGCACCTTTGTTGAATGGCCAAGATTGTTGACTTTTTATCAAAGGAGTGCAATCGAGCTCTAAATTGGGACTCCTTGATTGATGTCTAATACTAGACAATACACACGAGTGGTATATGCTTTATTTTTGGAGATCACAGCGGATCTGAATTCCTCTACACTGCAATACACCTAGGTTTTGAAGAACTATCTGTTATCGCGGTCAACCATTTCGTTACTTGTATGATTTAGAATGTAGAAAATTCTTGGAATTTTGTTCCAAAAGTTTTTGACTAATAGATTTTCTGTCCATTTGACAAAGGGAGAGCTTGTTTTGTTCTGAAGCTGTAGAAATCCTTATAGGAAATTTTAACTTTCTTCGCATTCTCATGGTTTGATTGGTTGATTGATTTCAGGATCCATACTTGAACAATGTCTTTGGAAATTTATAGGAATCTACTCTAGAATGCTACTGTGGAGTGCCAGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAAGTAAGCATATACAAGTTGATATATAATACTCTCTACTTAGTTTGCCTCCGCTCCTTTGTATTTATATTCTGAACACTGCCAGCAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGTGATGATAGACATGTCAATGAACTAGACTTGATCCGCAACGTGTGTCTTCGTCTAACAGAAAGATTTGACGAAATCGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGTTAACATTGAAACTATCAACTCTGCAGATTCAGTTTGATGATATTCATAATAGAATAAGGATGTCGAATGAGTCGTTTTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACGAGAACGACGACACATTAGTTGTATATACTTTGTAATGAGACCATTGTAAATTATATCAAGTTGTGTGAGAGATCATGTAAAAAAAATTTAAGCTATCTATTTTCGGTGTGACTTTGTTTGGTAACTATTTTGTTACTTGCTTTCGTAGAAAAATGAAAATATCGAAATTC

mRNA sequence

TTTCCCTAAAATTATCCATATTTTCAACCCCATTGAAAATTAAAAGTAACTCGAGGGATAAGATTTGTCATTATCAACAGAAAAGAGAGAGAGAGAAAATACAAAACAATGAAGATTCCGATCATCTTAGGAAGTGCTTTTGGTTTGGCCCCCACACGATAAGCTTCAAACTCCTCGATCTCTTCATTTACGGACGCTCGTCGTTCGTTGTATCAATGCAACGGCAATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAATTTACCAACCACGCTCTTTTAAGATCCATACTTGAACAATGTCTTTGGAAATTTATAGGAATCTACTCTAGAATGCTACTGTGGAGTGCCAGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGTGATGATAGACATGTCAATGAACTAGACTTGATCCGCAACGTGTGTCTTCGTCTAACAGAAAGATTTGACGAAATCGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGTTAACATTGAAACTATCAACTCTGCAGATTCAGTTTGATGATATTCATAATAGAATAAGGATGTCGAATGAGTCGTTTTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACGAGAACGACGACACATTAGTTGTATATACTTTGTAATGAGACCATTGTAAATTATATCAAGTTGTGTGAGAGATCATGTAAAAAAAATTTAAGCTATCTATTTTCGGTGTGACTTTGTTTGGTAACTATTTTGTTACTTGCTTTCGTAGAAAAATGAAAATATCGAAATTC

Coding sequence (CDS)

ATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGTGATGATAGACATGTCAATGAACTAGACTTGATCCGCAACGTGTGTCTTCGTCTAACAGAAAGATTTGACGAAATCGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGTTAACATTGAAACTATCAACTCTGCAGATTCAGTTTGATGATATTCATAATAGAATAAGGATGTCGAATGAGTCGTTTTCAATGCCTCCTTTTGATTCACTTTCCATTAGGGACGAGAACGACGACACATTAGTTGTATATACTTTGTAA

Protein sequence

MSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEIEEEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIRDENDDTLVVYTL

Homology

[Close]

BLAST of Bhi05G000991 vs. ExPASy TrEMBL
Match: A0A1S4E0B8 (uncharacterized protein LOC103495284 OS=Cucumis melo OX=3656 GN=LOC103495284 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.2e-56
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEI 60
           MS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVC+RLTER DEI
Sbjct: 24  MSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDDRHANELDLIRNVCIRLTERLDEI 83

Query: 61  EEEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIR--DEND 120
            EEHEDEK EWEREKAELTLKLSTLQ Q DDI+NRIR++NESFSMPPF+SLSIR  D+N+
Sbjct: 84  IEEHEDEKEEWEREKAELTLKLSTLQTQLDDINNRIRITNESFSMPPFESLSIRDDDDNN 143

Query: 121 DTLVVYTL 127
           DTLVVY L
Sbjct: 144 DTLVVYAL 151

[Close]

BLAST of Bhi05G000991 vs. ExPASy TrEMBL
Match: A0A5A7SJM5 (GRF-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00990 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.2e-56
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEI 60
           MS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVC+RLTER DEI
Sbjct: 24  MSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDDRHANELDLIRNVCIRLTERLDEI 83

Query: 61  EEEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIR--DEND 120
            EEHEDEK EWEREKAELTLKLSTLQ Q DDI+NRIR++NESFSMPPF+SLSIR  D+N+
Sbjct: 84  IEEHEDEKEEWEREKAELTLKLSTLQTQLDDINNRIRITNESFSMPPFESLSIRDDDDNN 143

Query: 121 DTLVVYTL 127
           DTLVVY L
Sbjct: 144 DTLVVYAL 151

[Close]

BLAST of Bhi05G000991 vs. ExPASy TrEMBL
Match: A0A0A0K2H6 (GRF-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071640 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 107/127 (84.25%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEI 60
           MS TEK PFRLFYNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVC+RLTER DEI
Sbjct: 24  MSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDRHANELDLIRNVCIRLTERLDEI 83

Query: 61  EEEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIRDENDD- 120
            EEHEDEK EWEREKAELTLKLSTLQ Q DDIHNR+R++NESFSMPPF+SLSIRD++DD 
Sbjct: 84  VEEHEDEKEEWEREKAELTLKLSTLQTQLDDIHNRVRITNESFSMPPFESLSIRDDDDDN 143

Query: 121 TLVVYTL 127
           TLV+YTL
Sbjct: 144 TLVIYTL 150

[Close]

BLAST of Bhi05G000991 vs. ExPASy TrEMBL
Match: A0A6J1D427 (uncharacterized protein LOC111017399 OS=Momordica charantia OX=3673 GN=LOC111017399 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.1e-51
Identity = 101/126 (80.16%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 2   SQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEIE 61
           SQT KNPFRLFYNCPKEISQQCGFFHWADEPEP DDRHV EL+LIRNVCL L +R DEIE
Sbjct: 25  SQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVEELNLIRNVCLHLQDRLDEIE 84

Query: 62  EEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIR-DENDDT 121
           EEH++EKAEWER+K ELTL+L TLQ Q DDI +RIRM+NESFSMPP D+LSIR DE DD 
Sbjct: 85  EEHDNEKAEWERDKEELTLQLVTLQSQLDDIQHRIRMANESFSMPPLDALSIRDDEGDDA 144

Query: 122 LVVYTL 127
           LV+YTL
Sbjct: 145 LVIYTL 150

[Close]

BLAST of Bhi05G000991 vs. ExPASy TrEMBL
Match: A0A6A6L2I8 (GRF-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_013230 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.2e-34
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 1   MSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCLRLTERFDEI 60
           +SQT +NPFRLFYNCP+  + QCGFF W DEP P  DRH +E++LIRN C RL  R DEI
Sbjct: 49  VSQTPRNPFRLFYNCPRSCNFQCGFFRWWDEPAPTGDRHTDEVNLIRNECARLQGRLDEI 108

Query: 61  EEEHEDEKAEWEREKAELTLKLSTLQIQFDDIHNRIRMSNESFSMPPFDSLSIR-DENDD 120
           E+ HE++++ WEREK+EL LKLST+Q + D+I  R+R  NES  MPP D+L I  DE DD
Sbjct: 109 EQRHENDRSVWEREKSELMLKLSTVQTELDEIKERLRTVNESDLMPPLDNLLIADDEGDD 168

Query: 121 TLVVYTL 127
            + ++T+
Sbjct: 169 VIEIHTI 175

The following BLAST results are available for this feature:

BLAST of Bhi05G000991 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000991 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0B8	8.2e-56	85.16	uncharacterized protein LOC103495284 OS=Cucumis melo OX=3656 GN=LOC103495284 PE=...	[more]
A0A5A7SJM5	8.2e-56	85.16	GRF-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0K2H6	4.1e-55	84.25	GRF-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071640 PE...	[more]
A0A6J1D427	6.1e-51	80.16	uncharacterized protein LOC111017399 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6A6L2I8	5.2e-34	56.69	GRF-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_013230...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..88
None	No IPR available	PANTHER	PTHR33248	ZINC ION-BINDING PROTEIN	coord: 1..116
None	No IPR available	PANTHER	PTHR33248:SF19	RETICULOCYTE-BINDING PROTEIN 2 HOMOLOG A-LIKE	coord: 1..116
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 3..31 e-value: 4.0E-9 score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000991	Bhi05M000991	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding