Bhi05G000631 (gene) Wax gourd (B227) v1

Overview
NameBhi05G000631
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionkeratin, type II cytoskeletal 1
Locationchr5: 25703764 .. 25704529 (+)
RNA-Seq ExpressionBhi05G000631
SyntenyBhi05G000631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGTCAGCAAGCGGAATCGGGGAGGCAGTGGCGGTGGCTATGGATGGGGATGGGGCGGCGGTGGAGGTGGGGGAGGTGCGGAGGTGGCGGAGGTGGTGGTGGAGGTTGGGGATGGGGAGGAGGTGGAGGTGGATGGTGGAAATGGGGTTGTGGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGAAAGGAAGATGTAGAGGAATGAGATTAGACTGCCCACTTCACTGCGGCGGACCTTGCTTTTATGACTGTCGATACATGTGCAAGGCTCATTGTAGACGCCCCTAATTTGCATTGCGAGCCATAGCTCCATAACTCTTAAGCTTACTCAGTTTAATTTGACCTTTTTTTTTTCACTTTTAACTATGTAGCAGAATTAAGTATTTTCTCTTTTTGATAAAGAAGCTAATTTGATTTCAATTTGTTGAAACTCTTTAATTTGCCTATCTGTTTCACCCTAGTCACCTTAATGTGTGTGGGAGATGATTGCCTGCCT

mRNA sequence

GGAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGAAAGGAAGATGTAGAGGAATGAGATTAGACTGCCCACTTCACTGCGGCGGACCTTGCTTTTATGACTGTCGATACATGTGCAAGGCTCATTGTAGACGCCCCTAATTTGCATTGCGAGCCATAGCTCCATAACTCTTAAGCTTACTCAGTTTAATTTGACCTTTTTTTTTTCACTTTTAACTATGTAGCAGAATTAAGTATTTTCTCTTTTTGATAAAGAAGCTAATTTGATTTCAATTTGTTGAAACTCTTTAATTTGCCTATCTGTTTCACCCTAGTCACCTTAATGTGTGTGGGAGATGATTGCCTGCCT

Coding sequence (CDS)

GAAAATCCAATTAAATTATGTGCTTTGGTGGTTTTTGCAGCAGTGCTTTATGGGTCAAGAGCTGAGGGTTTGGGAAATGGAAGTATGACCACAAATGTCACTTTCTTAACATTCTCAGAGCTGCCACAGGGTAATGCAGGGGAGATCAAGAGAAACAATTCTGGTAATACTACTACGGTTGAGGACAGCGAAAATCCGAGAGAGTTCGACGACACGACGGACAGAGGAATAATTTTAACAGGAAGAAAATGTATGACGAGGACGATTATAGAATGGGGGAATTTGCCCAATGTATGGTGA

Protein sequence

ENPIKLCALVVFAAVLYGSRAEGLGNGSMTTNVTFLTFSELPQGNAGEIKRNNSGNTTTVEDSENPREFDDTTDRGIILTGRKCMTRTIIEWGNLPNVW
Homology
[Close]
BLAST of Bhi05G000631 vs. ExPASy TrEMBL
Match: A0A1S3C029 (keratin, type II cytoskeletal 1 OS=Cucumis melo OX=3656 GN=LOC103495464 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRNNSGNTTT 60
          ENPIKL ALV+ A V+YGSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN+S NT+T
Sbjct: 4  ENPIKLSALVILATVIYGSRAAEGLGNGSMPINVTFLTFSELPQRNAGE-RRNSSSNTST 63

Query: 61 VEDSE 65
          VE S+
Sbjct: 64 VEVSK 67

[Close]
BLAST of Bhi05G000631 vs. ExPASy TrEMBL
Match: A0A0A0K766 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 1  ENPIKLCALVVFAAVLYGSR-AEGLGNGSMTTNVTFLTFSELPQGNAGEIKRNNSGNTTT 60
          ENPIKL ALV+ A V+ GSR AEGLGNGSM  NVTFLTFSELPQ NAGE +RN+S N+TT
Sbjct: 4  ENPIKLSALVILATVISGSRAAEGLGNGSMPMNVTFLTFSELPQRNAGE-RRNSSSNSTT 63

Query: 61 VEDSE 65
          VE S+
Sbjct: 64 VEVSK 67

[Close]
BLAST of Bhi05G000631 vs. ExPASy TrEMBL
Match: A0A6J1FRC8 (glycine-rich RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111446212 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-06
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 16 LYGSRAEGLGNGSMTTNVTFLTFSELPQGNAGEIKRNNSGNTTTVEDSENPR 68
          +YGSRAEGL NG      TFLTFSELP GNAGE  RN+SGNTTTVE S+  R
Sbjct: 54 VYGSRAEGLKNG------TFLTFSELPGGNAGE-GRNSSGNTTTVEVSKQNR 98

The following BLAST results are available for this feature:
BLAST of Bhi05G000631 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi05G000631 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi05G000631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C0291.2e-1475.38keratin, type II cytoskeletal 1 OS=Cucumis melo OX=3656 GN=LOC103495464 PE=4 SV=... [more]
A0A0A0K7661.4e-1373.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G056450 PE=4 SV=1[more]
A0A6J1FRC88.0e-0669.23glycine-rich RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000631Bhi05M000631mRNA