Bhi05G000630 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000630
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Calcium-binding protein CML
Location	chr5: 25695999 .. 25696164 (+)
RNA-Seq Expression	Bhi05G000630
Synteny	Bhi05G000630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCACGCAGCTTGAGCCTGACGCCCTCCTCTGCTCCCTCGACATCAAACCTTCATGCAACCAACTTCATTCTCTCCTCTCCAACATGGATTTCAATGGCAATGACTCCATCGAATCAAAAGACAACATGGGTTCCAAAGGCAACCATTCCATCTTTCCTCCTTAA

mRNA sequence

CCTCACGCAGCTTGAGCCTGACGCCCTCCTCTGCTCCCTCGACATCAAACCTTCATGCAACCAACTTCATTCTCTCCTCTCCAACATGGATTTCAATGGCAATGACTCCATCGAATCAAAAGACAACATGGGTTCCAAAGGCAACCATTCCATCTTTCCTCCTTAA

Coding sequence (CDS)

CCTCACGCAGCTTGAGCCTGACGCCCTCCTCTGCTCCCTCGACATCAAACCTTCATGCAACCAACTTCATTCTCTCCTCTCCAACATGGATTTCAATGGCAATGACTCCATCGAATCAAAAGACAACATGGGTTCCAAAGGCAACCATTCCATCTTTCCTCCTTAA

Protein sequence

LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIESKDNMGSKGNHSIFPP

Homology

[Close]

BLAST of Bhi05G000630 vs. TAIR 10
Match: AT1G18530.1 (EF hand calcium-binding protein family )

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIESKDNMGS 46
          LT LE  ALL SL +KPS +Q+H LL++MD NGN  +E  + +G+
Sbjct: 23 LTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEFDELVGT 67

[Close]

BLAST of Bhi05G000630 vs. ExPASy TrEMBL
Match: A0A6J1JA36 (probable calcium-binding protein CML16 OS=Cucurbita maxima OX=3661 GN=LOC111484890 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIE 39
          LTQLE  ALL SL IKPS +QLHSLLSNMD NGN SIE
Sbjct: 27 LTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIE 64

[Close]

BLAST of Bhi05G000630 vs. ExPASy TrEMBL
Match: A0A0A0KUE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608150 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIE 39
          LTQLE  ALL SL IKPS +QLHSLLSNMD NGN SIE
Sbjct: 28 LTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIE 65

[Close]

BLAST of Bhi05G000630 vs. ExPASy TrEMBL
Match: A0A6J1D725 (probable calcium-binding protein CML16 OS=Momordica charantia OX=3673 GN=LOC111017528 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIESKD 42
          LTQLE  ALL SL IKPS +QLHSLLSNMD NGN SIE ++
Sbjct: 27 LTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIEFEE 67

[Close]

BLAST of Bhi05G000630 vs. ExPASy TrEMBL
Match: A0A6J1GX12 (probable calcium-binding protein CML16 OS=Cucurbita moschata OX=3662 GN=LOC111458327 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIESKD 42
          LTQLE  ALL SL IKPS +QLHSLLSNMD NGN SIE ++
Sbjct: 27 LTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIEFEE 67

[Close]

BLAST of Bhi05G000630 vs. ExPASy TrEMBL
Match: A0A1S3BF88 (probable calcium-binding protein CML16 OS=Cucumis melo OX=3656 GN=LOC103489229 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1  LTQLEPDALLCSLDIKPSCNQLHSLLSNMDFNGNDSIE 39
          LTQLE  ALL SL IKPS +QLHSLLSNMD NGN SIE
Sbjct: 28 LTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIE 65

The following BLAST results are available for this feature:

BLAST of Bhi05G000630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18530.1	2.4e-04	51.11	EF hand calcium-binding protein family	[more]

BLAST of Bhi05G000630 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi05G000630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA36	2.4e-04	78.95	probable calcium-binding protein CML16 OS=Cucurbita maxima OX=3661 GN=LOC1114848...	[more]
A0A0A0KUE0	2.4e-04	78.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608150 PE=4 SV=1	[more]
A0A6J1D725	2.4e-04	73.17	probable calcium-binding protein CML16 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GX12	2.4e-04	73.17	probable calcium-binding protein CML16 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3BF88	2.4e-04	78.95	probable calcium-binding protein CML16 OS=Cucumis melo OX=3656 GN=LOC103489229 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000630	Bhi05M000630	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030234	enzyme regulator activity