Bhi05G000443 (gene) Wax gourd (B227) v1

Overview
NameBhi05G000443
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptiontranscription termination factor MTEF18, mitochondrial-like
Locationchr5: 16407263 .. 16407585 (+)
RNA-Seq ExpressionBhi05G000443
SyntenyBhi05G000443
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTATAATGCTTTTCTTCCACGCAAATTGATGTTCTTGAGTGATGATGATTCATTGCTGGAGAACTTTCATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAAGGAAGATATATAAGGAGGCAACTCAGATATTTCGGTATGACTATGGTGTTTTGTTATCGAAGTTAAAAGCATATGAAAAACTTGGTCTCAGCCAAGCTACAGTCGTTAAATTTGTTGTTTGTAGCCCTTATCTATTGGTTGGTGGTGTTAATGATGGGTTTGTCCAGGTATTAGAAAAATTGAAGAACGTTGGACTTGAATCAAGCTGGGTGTAA

mRNA sequence

AGTATAATGCTTTTCTTCCACGCAAATTGATGTTCTTGAGTGATGATGATTCATTGCTGGAGAACTTTCATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAAGGAAGATATATAAGGAGGCAACTCAGATATTTCGGTATGACTATGGTGTTTTGTTATCGAAGTTAAAAGCATATGAAAAACTTGGTCTCAGCCAAGCTACAGTCGTTAAATTTGTTGTTTGTAGCCCTTATCTATTGGTTGGTGGTGTTAATGATGGGTTTGTCCAGGTATTAGAAAAATTGAAGAACGTTGGACTTGAATCAAGCTGGGTGTAA

Coding sequence (CDS)

AGTATAATGCTTTTCTTCCACGCAAATTGATGTTCTTGAGTGATGATGATTCATTGCTGGAGAACTTTCATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAAGGAAGATATATAAGGAGGCAACTCAGATATTTCGGTATGACTATGGTGTTTTGTTATCGAAGTTAAAAGCATATGAAAAACTTGGTCTCAGCCAAGCTACAGTCGTTAAATTTGTTGTTTGTAGCCCTTATCTATTGGTTGGTGGTGTTAATGATGGGTTTGTCCAGGTATTAGAAAAATTGAAGAACGTTGGACTTGAATCAAGCTGGGTGTAA

Protein sequence

YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAYEKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV
Homology
[Close]
BLAST of Bhi05G000443 vs. TAIR 10
Match: AT4G19650.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-30
Identity = 60/106 (56.60%), Postives = 77/106 (72.64%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           +  FLPRKLMFLSDD  + ENFH LCNYGI R KI ++YKEA +IFRY+ G+L  KL+ Y
Sbjct: 144 FETFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGY 203

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           E LGLS+ATV+K V   P LLVGG++  F  V++KLK + +   W+
Sbjct: 204 ENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKGLQVGCDWL 249

[Close]
BLAST of Bhi05G000443 vs. TAIR 10
Match: AT5G06810.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 110.5 bits (275), Expect = 8.1e-25
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           ++  +P   MFL++D  LLEN+HV  NYGI R K+ KI+KEA ++F Y+ GVL SK+K+Y
Sbjct: 706 FSHLIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFKEAREVFGYETGVLASKIKSY 765

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           E LG S+  + K +VCSP +L+G +N G  +V+E LK +G    WV
Sbjct: 766 EDLGFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLKAIGFGVDWV 811

[Close]
BLAST of Bhi05G000443 vs. TAIR 10
Match: AT5G45113.1 (mitochondrial transcription termination factor-related / mTERF-related )

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 18  LLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAYEKLGLSQATVVKFVVCS 77
           + ENFHVLC YGI R+KI ++YKEA +IF Y+ GVL SKL+ YE L L +A V+K V C 
Sbjct: 1   MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60

Query: 78  PYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           P LLVGG++  FV V+ KLK + L   W+
Sbjct: 61  PLLLVGGIDCEFVSVVNKLKGLNLGCDWL 89

[Close]
BLAST of Bhi05G000443 vs. TAIR 10
Match: AT3G60400.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.5e-07
Identity = 27/81 (33.33%), Postives = 42/81 (51.85%), Query Frame = 0 

Query: 4   FLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAYEKL 63
           FLP K  F S+D ++L+    L  +G   NK+ K+YKE   +F    G + S+L  ++ +
Sbjct: 114 FLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDI 173

Query: 64  GLSQATVVKFVVCSPYLLVGG 85
           G S   V+   +  P  L GG
Sbjct: 174 GFSTVAVIGTCLAIPRTLCGG 194

[Close]
BLAST of Bhi05G000443 vs. ExPASy Swiss-Prot
Match: Q9M219 (Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF18 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.3e-06
Identity = 27/81 (33.33%), Postives = 42/81 (51.85%), Query Frame = 0 

Query: 4   FLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAYEKL 63
           FLP K  F S+D ++L+    L  +G   NK+ K+YKE   +F    G + S+L  ++ +
Sbjct: 114 FLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKFKDI 173

Query: 64  GLSQATVVKFVVCSPYLLVGG 85
           G S   V+   +  P  L GG
Sbjct: 174 GFSTVAVIGTCLAIPRTLCGG 194

[Close]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match: A0A5D3C501 (Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001590 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           YNAFLPR LMFLSDDD LLENFHVLCNYGIERNK  KIYKEATQIFRYDYGVL SKL+AY
Sbjct: 143 YNAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQIFRYDYGVLFSKLRAY 202

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           EKLGLSQ TVVK+VVCSPYLL+GGVND FV+VLEKLKN+G ESSWV
Sbjct: 203 EKLGLSQDTVVKYVVCSPYLLIGGVNDRFVKVLEKLKNIGFESSWV 248

[Close]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match: A0A5A7SUH9 (Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00440 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           YNAFLPR LMFLSDDD LLENFHVLCNYGIERNK  KIYKEATQIFRYDYGVL SKL+AY
Sbjct: 143 YNAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQIFRYDYGVLFSKLRAY 202

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           EKLGLSQ TVVK+VVCSPYLL+GGVND FV+VLEKLKN+G ESSWV
Sbjct: 203 EKLGLSQDTVVKYVVCSPYLLIGGVNDRFVKVLEKLKNIGFESSWV 248

[Close]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match: A0A1S4DU70 (transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486064 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           YNAFLPR LMFLSDDD LLENFHVLCNYGIERNK  KIYKEATQIFRYDYGVL SKL+AY
Sbjct: 155 YNAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQIFRYDYGVLFSKLRAY 214

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           EKLGLSQ TVVK+VVCSPYLL+GGVND FV+VLEKLKN+G ESSWV
Sbjct: 215 EKLGLSQDTVVKYVVCSPYLLIGGVNDRFVKVLEKLKNIGFESSWV 260

[Close]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match: A0A5D3C248 (Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001580 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           Y+AFLPR LMFLSDDD LLENFHVLCNYGIERNK  KIYKEATQIFRYDYGVLLSKLKAY
Sbjct: 143 YSAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQIFRYDYGVLLSKLKAY 202

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           EKLGLSQATVV+FVV +PYLL+GGVND FV+VLEKLKN+G ESSWV
Sbjct: 203 EKLGLSQATVVRFVVSNPYLLIGGVNDQFVKVLEKLKNIGFESSWV 248

[Close]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match: A0A5A7SWK2 (Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00430 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   YNAFLPRKLMFLSDDDSLLENFHVLCNYGIERNKIRKIYKEATQIFRYDYGVLLSKLKAY 60
           Y+AFLPR LMFLSDDD LLENFHVLCNYGIERNK  KIYKEATQIFRYDYGVLLSKLKAY
Sbjct: 143 YSAFLPRNLMFLSDDDLLLENFHVLCNYGIERNKTGKIYKEATQIFRYDYGVLLSKLKAY 202

Query: 61  EKLGLSQATVVKFVVCSPYLLVGGVNDGFVQVLEKLKNVGLESSWV 107
           EKLGLSQATVV+FVV +PYLL+GGVND FV+VLEKLKN+G ESSWV
Sbjct: 203 EKLGLSQATVVRFVVSNPYLLIGGVNDQFVKVLEKLKNIGFESSWV 248

The following BLAST results are available for this feature:
BLAST of Bhi05G000443 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G19650.11.7e-3056.60Mitochondrial transcription termination factor family protein [more]
AT5G06810.18.1e-2548.11Mitochondrial transcription termination factor family protein [more]
AT5G45113.14.9e-2255.06mitochondrial transcription termination factor-related / mTERF-related [more]
AT3G60400.14.5e-0733.33Mitochondrial transcription termination factor family protein [more]
BLAST of Bhi05G000443 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2196.3e-0633.33Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana O... [more]
BLAST of Bhi05G000443 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5012.9e-4687.74Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SUH92.9e-4687.74Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S4DU702.9e-4687.74transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3... [more]
A0A5D3C2481.1e-4587.74Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SWK21.1e-4587.74Transcription termination factor MTEF18 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 13..82
e-value: 1.7E-6
score: 27.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 2..101
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 3..106
e-value: 2.4E-9
score: 38.7
NoneNo IPR availablePANTHERPTHR13068:SF103MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 2..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000443Bhi05M000443mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0032502 developmental process
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003690 double-stranded DNA binding