Bhi05G000389 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000389
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein TIC 214
Location	chr5: 13746936 .. 13747804 (-)
RNA-Seq Expression	Bhi05G000389
Synteny	Bhi05G000389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCAACAATGCACGTGACTATAGGGGTTCAATGGCCATTCCATCAGCAACACAAAGCAGCTCGTTAAGCAAAGTGCTAAGATGTTACTTGGGCCTTTCTGCGTTCGCCCTTGACGACCTTTCAAAAAGGGTACCTGTACCCGAAACCGCAAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTTCTTCTAAGGAACTCGGCAATAAGCCCCGTAACTTCGGGAGAAGGGTGCCTCCTCACAAAGGGGGTCGCCAGTGACAGGCCCGGGCGACTGTTTTACCAAAAACACAGGTCTCGCAAAGTGTAAGACCATGTATGGGGGCTGACCCTGCCCCAGTGCCGGAAGGTCAAGGAAGTTGTGACTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGGAATGGCGGCCGTAACTATAACGGTTCCTAAGGTAGGAAATTCTTGTCGGGTAAGTTCCGACCCGCACGAAAGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTTAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTTATGAAGCTTCACTGTTCTTGGATGGCTTTTGGGCCCTTAGGTGAACGAAAGGCACCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAAATTCTACTTGTGTCAGGACCCTACGGGCCAAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGGTAACGGAGGCGTGCAAAGGTTATCCTCTGGGCCAGAGGAGATTGGCCCTCGAGTGCAAAGGCAGAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGACGAAAGTCGGCTTAG

mRNA sequence

ATGATCTCCAACAATGCACGTGACTATAGGGGTTCAATGGCCATTCCATCAGCAACACAAAGCAGCTCGTTAAGCAAAGTGCTAAGATGTTACTTGGGCCTTTCTGCGTTCGCCCTTGACGACCTTTCAAAAAGGGTACCTGTACCCGAAACCGCAAGGTGGTGCCGGAAGGTCAAGGAAGTTGTGACTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGGAATGGCGGCCGTAACTATAACGGTTCCTAAGGTAGGAAATTCTTGTCGGGTAAGTTCCGACCCGCACGAAAGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTTAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTTATGAAGCTTCACTGTTCTTGGATGGCTTTTGGGCCCTTAGGTGAACGAAAGGCACCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAAATTCTACTTGTGTCAGGACCCTACGGGCCAAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGGTAACGGAGGCGTGCAAAGGTTATCCTCTGGGCCAGAGGAGATTGGCCCTCGAGTGCAAAGGCAGAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGACGAAAGTCGGCTTAG

Coding sequence (CDS)

ATGATCTCCAACAATGCACGTGACTATAGGGGTTCAATGGCCATTCCATCAGCAACACAAAGCAGCTCGTTAAGCAAAGTGCTAAGATGTTACTTGGGCCTTTCTGCGTTCGCCCTTGACGACCTTTCAAAAAGGGTACCTGTACCCGAAACCGCAAGGTGGTGCCGGAAGGTCAAGGAAGTTGTGACTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGGAATGGCGGCCGTAACTATAACGGTTCCTAAGGTAGGAAATTCTTGTCGGGTAAGTTCCGACCCGCACGAAAGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTTAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTTATGAAGCTTCACTGTTCTTGGATGGCTTTTGGGCCCTTAGGTGAACGAAAGGCACCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAAATTCTACTTGTGTCAGGACCCTACGGGCCAAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGGTAACGGAGGCGTGCAAAGGTTATCCTCTGGGCCAGAGGAGATTGGCCCTCGAGTGCAAAGGCAGAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGACGAAAGTCGGCTTAG

Protein sequence

MISNNARDYRGSMAIPSATQSSSLSKVLRCYLGLSAFALDDLSKRVPVPETARWCRKVKEVVTDDRGAGDRSPGGMAAVTITVPKVGNSCRVSSDPHESVTIWALSRREARLNRHVCEDADYLHLDRKTLMKLHCSWMAFGPLGERKAPEPSVRYHSGRARNSTCVRTLRAKGTVSGRQFLWGVGLPKVTEACKGYPLGQRRLALECKGRGSLTARPTRRAGRKSA

Homology

[Close]

BLAST of Bhi05G000389 vs. ExPASy TrEMBL
Match: A0A5N6N4F8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25333 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 70/141 (49.65%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 88  NSCRVSSDPHESVTIWALSRREARLNRHVCEDADYLHLDRKTLMKLHCSW---MAFGPLG 147
           +  R +   +  VTIWALSRREA +NRHVCEDADYLHLDRK  MKL   W    AF    
Sbjct: 36  DQARATFTKNTGVTIWALSRREAEVNRHVCEDADYLHLDRKDPMKLTVPWDWLWAFPAQL 95

Query: 148 ERKAPEPSVRYHSGRARNSTCVRTLRAKGTVSGRQFLWGVGLPKVTEACKGYPLGQRRLA 207
             KA  P     SG             +GTVSGRQFLWGVGLPK     + +P       
Sbjct: 96  SWKAKRPP----SGGT---------YGQGTVSGRQFLWGVGLPKGNGGVQRFPRPDGDWP 155

Query: 208 LECKGRGSLTARPTRRAGRKS 226
              K  GSLTARPTRRAG K+
Sbjct: 156 SSAKAEGSLTARPTRRAGTKA 163

[Close]

BLAST of Bhi05G000389 vs. ExPASy TrEMBL
Match: A0A444YMV8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g082164 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 49/108 (45.37%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 115 HVCEDADYLHLDRKTLMKLHCSWMAFGPL------GERKAPEPSVRYHSGRARNSTCVRT 174
           HVCEDADYLHLDRKT        + FG        G R+ P     +   RA   T    
Sbjct: 29  HVCEDADYLHLDRKTYEASLFPGIGFGLFLRSLGGGRRRPP-----FGGARAIRPT---- 88

Query: 175 LRAKGTVSGRQFLWGVGLPKVTEACKGYPLGQRRLALECKGRGSLTAR 217
              +GTVSGRQFLWGVGLPK     + +P  + RLALE KGR  L  +
Sbjct: 89  --GQGTVSGRQFLWGVGLPKGNGGVQRFPRARWRLALEYKGRRELDCK 125

[Close]

BLAST of Bhi05G000389 vs. ExPASy TrEMBL
Match: A0A6N2NAY5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 51/122 (41.80%), Postives = 58/122 (47.54%), Query Frame = 0


Query: 125 LDRKTLMKLHCSW------------MAFGPL-----GERKAP-----EPSVRYHSGRARN 184
           +D    M+  C+W            + FGP      G R+ P     EPSVRYHSGRAR 
Sbjct: 231 IDMSVKMRTTCTWTERPYEASLFPGIGFGPFLRSLGGRRRRPPSGGSEPSVRYHSGRARI 290

Query: 185 STCVRTLRAKGTVSGRQFLWGVGLPKVTEACKGYPLGQRRLALECKGRGSLTARPTRRAG 225
            T  + LRAKG     Q        KVTEACKG+           K  GSLTARPTRRAG
Sbjct: 291 LTLCQDLRAKGQSQASQ--------KVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAG 344

[Close]

BLAST of Bhi05G000389 vs. ExPASy TrEMBL
Match: A0A2G3B255 (Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_30341 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 142 PLGERKAPEPSVRYHSGRARNSTCVRTLRA------KGTVSGRQFLWGVGLPKVTEACKG 201
           P GER A E S+R   G    S  V    A      +GTVSGRQFLWGVGLPK     + 
Sbjct: 98  PGGERSALEGSLRASGGGRSGSENVGLSNANIGPTGQGTVSGRQFLWGVGLPKANGGMQK 157

Query: 202 YPLGQRRLALECKGRGSL 214
           +P  +RRLALECKGR  L
Sbjct: 158 FPRAERRLALECKGRREL 175

[Close]

BLAST of Bhi05G000389 vs. ExPASy TrEMBL
Match: A0A5N6NWN0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18043 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 40/75 (53.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 150 EPSVRYHSGRARNSTCVRTLRAKGTVSGRQFLWGVGLPKVTEACKGYPLGQRRLALECKG 209
           EPSVRYHSGRAR  T  + +RAKG      F       KVTEACKG+        L  K 
Sbjct: 34  EPSVRYHSGRARILTLCQDIRAKGQSQVDSFYGAYASQKVTEACKGFLGPDGDWPLSAKA 93

Query: 210 RGSLTARPTRRAGRK 225
            GSLTAR TRRAG K
Sbjct: 94  EGSLTARSTRRAGTK 108

The following BLAST results are available for this feature:

BLAST of Bhi05G000389 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000389 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G000389 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6N4F8	1.1e-21	49.65	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25333 PE=4 SV=1	[more]
A0A444YMV8	6.5e-11	45.37	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g082164 PE=4 SV=1	[more]
A0A6N2NAY5	2.7e-09	41.80	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=...	[more]
A0A2G3B255	2.3e-08	51.28	Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_30341 PE=3 SV=1	[more]
A0A5N6NWN0	3.9e-08	53.33	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18043 PE=4 SV=1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000389	Bhi05M000389	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane