Bhi05G000380 (gene) Wax gourd (B227) v1

Overview
NameBhi05G000380
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 13520665 .. 13521150 (-)
RNA-Seq ExpressionBhi05G000380
SyntenyBhi05G000380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

mRNA sequence

ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

Coding sequence (CDS)

ATGCTCACAGATTTCTTAGCGAAAAGGAAGAAGACCAAGGAAAATGAAGAGGAAACGTCAGAATCTGATGAAGATCGTGAAGAGAAGCCAAAGGGCAATGCCAAGAAAGAGATGTCTTCCAACGATGGTGAAGGTAATCCCTTCAAATTCAAGAGACCTAAGCCTTGTTTCTTTTGTAAAGGGCCACATTGGACTAGGGATTGTCCAGTTAAGCAGAAACTGAAAACCCTAGTTAATGAGTCCCTTGAGACAAAAGCACAAATTGGGTCCATATACCAGATTGGGGCCATAGTCAAGGAAGTATCTTCAAAGAATGAAGGGAAAGAAACCAAAGAGGCCGAGACTAAACCCAAAAGCAAAAAGAGTGAATGGCTGAGGTTAGCCTCCCTTAAGAGTAACAAGGGAGACATGAACAAGTCTGAGGCATTGAAGGAAAGATTAGCCAAGCAATCAAAGGAAGGATGCATGAGGAGACACCGGCACTAG

Protein sequence

MLTDFLAKRKKTKENEEETSESDEDREEKPKGNAKKEMSSNDGEGNPFKFKRPKPCFFCKGPHWTRDCPVKQKLKTLVNESLETKAQIGSIYQIGAIVKEVSSKNEGKETKEAETKPKSKKSEWLRLASLKSNKGDMNKSEALKERLAKQSKEGCMRRHRH
Homology
BLAST of Bhi05G000380 vs. ExPASy TrEMBL
Match: A0A5C7HXW0 (Retrotrans_gag domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013093 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 2   LTDFLAKRKKTKENEEETSESDEDREEKPKGNAKKEMSSNDGE---GNPFKFKRPKPCFF 61
           LTD L + K+  +N  E  +  +D + K KG +K     N  +   G P   K   PCF 
Sbjct: 558 LTD-LTRSKERSDNHGEEGDKPKDNDRKDKGRSKSPNDDNRHDIQGGKPAVIKPKSPCFI 617

Query: 62  CKGPHWTRDCPVKQKLKTLVNESLETK-----AQIGSIYQIGAI 98
           C GPHW RDCP ++ L  +V +  E+K     A +GSI QI AI
Sbjct: 618 CDGPHWVRDCPKRKMLNAMVTQLEESKATEGQASMGSIQQIYAI 660

BLAST of Bhi05G000380 vs. ExPASy TrEMBL
Match: A0A1S3BG92 (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 41  NDGEGNPFKFKRPKPCFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQ 100
           NDG         PKP F CKGPHWTRDCP ++ L  LV +  E K        QIGS+ Q
Sbjct: 365 NDGAHRGESSNPPKPYFICKGPHWTRDCPNRKALNALVTKFQEIKQVEDAPGPQIGSMQQ 424

Query: 101 IGAIVKEVSSKNEG 108
           I  + KE + +++G
Sbjct: 425 IWLMKKETTVEHKG 438

BLAST of Bhi05G000380 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-05
Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 2   LTDFLAKRKKTKENEEE---TSESDEDREEKPKGNAKK---EMSSNDGEGNPFKFKRPKP 61
           L D+ A+ K  K   E+    S+  ++   K  G  K    +   NDG         PKP
Sbjct: 320 LVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGESSNPPKP 379

Query: 62  CFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEGK 116
           CF CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QIG + KE + +++G 
Sbjct: 380 CFICKGPHWTRDCPNRKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVMKKETTVEHKGL 439

BLAST of Bhi05G000380 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 2   LTDFLAKRKKTKENEEE---TSESDEDREEKPKGNAKK---EMSSNDGEGNPFKFKRPKP 61
           L D+ A+ K  K   E+    S+  ++   +  G  K    +   NDG         PKP
Sbjct: 320 LVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTFQWKNGKNDGAHRGESSNPPKP 379

Query: 62  CFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           CF CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QIG + KE + +++G
Sbjct: 380 CFICKGPHWTRDCPNQKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVMKKETTVEHKG 438

BLAST of Bhi05G000380 vs. ExPASy TrEMBL
Match: A0A5A7SJU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002790 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0

Query: 2   LTDFLAKRKKTKENEEE---TSESDEDREEKPKGNAKK---EMSSNDGEGNPFKFKRPKP 61
           L D+ A+ K  K   E+     +  ++   K  G  K    +   NDG         PKP
Sbjct: 364 LVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGECSNPPKP 423

Query: 62  CFFCKGPHWTRDCPVKQKLKTLVNESLETK-------AQIGSIYQIGAIVKEVSSKNEG 108
           CF CKGPHWTRDCP ++ L  LV +  E K        QIGS+ QIG + KE + +++G
Sbjct: 424 CFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVMKKETTVEHKG 482

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7HXW01.7e-0538.46Retrotrans_gag domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_... [more]
A0A1S3BG922.2e-0543.24uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=... [more]
A0A5A7THC08.4e-0536.57Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7VEX81.1e-0436.13Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=... [more]
A0A5A7SJU92.5e-0436.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M000380Bhi05M000380mRNA