Bhi04G002034 (gene) Wax gourd (B227) v1

Overview
NameBhi04G002034
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotransposable element Tf2
Locationchr4: 67352573 .. 67352773 (-)
RNA-Seq ExpressionBhi04G002034
SyntenyBhi04G002034
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCTCGGCCATCCTCGGCCACTAAGGCAGCCTCCGCTGACGCAGAACATTCAGGCTAGCCCTTCCAAGGCTAGTATTTCAAAGGGGAAACAACCCATCTCTCAATCTTTTGCACCATCTCCCATGAGTGCAGAAAATTATGCCATGGACACCGAATTTGAAGTCGTGTCTAGAAGGCGTCAAGGCAATGCCTAA

mRNA sequence

ATGGAACCTCTCGGCCATCCTCGGCCACTAAGGCAGCCTCCGCTGACGCAGAACATTCAGGCTAGCCCTTCCAAGGCTAGTATTTCAAAGGGGAAACAACCCATCTCTCAATCTTTTGCACCATCTCCCATGAGTGCAGAAAATTATGCCATGGACACCGAATTTGAAGTCGTGTCTAGAAGGCGTCAAGGCAATGCCTAA

Coding sequence (CDS)

ATGGAACCTCTCGGCCATCCTCGGCCACTAAGGCAGCCTCCGCTGACGCAGAACATTCAGGCTAGCCCTTCCAAGGCTAGTATTTCAAAGGGGAAACAACCCATCTCTCAATCTTTTGCACCATCTCCCATGAGTGCAGAAAATTATGCCATGGACACCGAATTTGAAGTCGTGTCTAGAAGGCGTCAAGGCAATGCCTAA

Protein sequence

MEPLGHPRPLRQPPLTQNIQASPSKASISKGKQPISQSFAPSPMSAENYAMDTEFEVVSRRRQGNA
Homology
BLAST of Bhi04G002034 vs. ExPASy TrEMBL
Match: A0A5A7T6B7 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00990 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 7  PRPLRQPPLTQNIQASPSKASISKGKQPISQSFAPSPMSAENYAMDTEFEVVSRRRQGNA 66
          P P  QP  T +  AS S+AS SKGK PISQ+ A +PM A+NYAMD  F+ VSRRRQG++
Sbjct: 17 PLPSNQPSPTNSQPASSSRASSSKGKWPISQASALTPMCADNYAMDLSFQTVSRRRQGSS 76

BLAST of Bhi04G002034 vs. ExPASy TrEMBL
Match: A0A5D3DHL2 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001860 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 7  PRPLRQPPLTQNIQASPSKASISKGKQPISQSFAPSPMSAENYAMDTEFEVVSRRRQGNA 66
          P P  QP    +  AS SKAS SKGK+PISQ+   +PM  +NYAMD  F+ VS+ RQG++
Sbjct: 17 PLPSNQPNPANSQPASSSKASSSKGKRPISQASTLAPMCTDNYAMDLSFQTVSQSRQGSS 76

BLAST of Bhi04G002034 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 38/74 (51.35%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 3  PLGHPRPLRQPPLTQNIQAS-----PSKASISKGKQPI-----SQSFAPSPMSAENYAMD 62
          P G  RP  Q    QN Q S     P   + S G  P      +QS APSPMSAENYAMD
Sbjct: 4  PPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENYAMD 63

Query: 63 TEFEVVSRRRQGNA 67
           +FE VSRRRQG+A
Sbjct: 64 LQFEQVSRRRQGSA 77

BLAST of Bhi04G002034 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 38/74 (51.35%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 3  PLGHPRPLRQPPLTQNIQAS-----PSKASISKGKQPI-----SQSFAPSPMSAENYAMD 62
          P G  RP  Q    QN Q S     P   + S G  P      +QS APSPMSAENYAMD
Sbjct: 4  PPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENYAMD 63

Query: 63 TEFEVVSRRRQGNA 67
           +FE VSRRRQG+A
Sbjct: 64 LQFEQVSRRRQGSA 77

BLAST of Bhi04G002034 vs. ExPASy TrEMBL
Match: A0A5D3DIF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001850 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 21  ASPSKASISKGKQPISQSFAPSPMSAENYAMDTEFEVVSRRRQGNA 67
           AS S+ S S GK PISQ+ A +PM A NYAMD  F++VSRRRQG++
Sbjct: 509 ASSSRVSSSNGKHPISQTSALAPMCANNYAMDLSFQIVSRRRQGSS 554

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T6B74.8e-0758.33Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00990 PE... [more]
A0A5D3DHL25.9e-0551.67Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7TBK11.0e-0451.35Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3D2Q61.0e-0451.35Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3DIF51.3e-0460.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M002034Bhi04M002034mRNA