Bhi04G001993 (gene) Wax gourd (B227) v1

Overview
NameBhi04G001993
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionProtein of unknown function (DUF 3339)
Locationchr4: 66510817 .. 66512826 (+)
RNA-Seq ExpressionBhi04G001993
SyntenyBhi04G001993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCACCGCTATAACACATTCCAATGCTTTTCTTCTTCATCTTGCTTCATTAATTCCTCATTTCCTTTAACACACAGTCCCATAATAATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTGGTGCTCTTTGTTCTCTTAACTCCTGGACTGTTGGTTCAGATGCCGGGCAAGAACCGGTTCGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCCATTCTGGTTCATTCCATTCTCTATTTTGCGTTAATTTGCATCTTCTTGTTGGCTGTTCATGTTCATGTTTATATGGGCTCTTAATTCTACGTCTTTTCTGTAATCTTCTTTTATTTTCTTCTCTCTCTTGCCTTAAATCTATTCGTCTTTTCTCTTTACACTTGTTTCATCCCCATTTTCGTCAATCATATAATCTGCTTTGATTTATTAATCTGTCTACTGTATAATCATATATAATCTGCTTTGATTTATTAATCTATCTGCTGTGTAATATTTGAATCTGCTTTGATTTATTAATCTGTCTGCGTGTAATCTTTAAATATGAAGAATTGCCGAGAACCATTCTCTTAACTTTCTCCTCTGTTTTTCATGAATTTGAGAAGAATTTGATTCTCAAATTCATGAATCTCAAGTTCGATAACTATTGGATCGAAATATTAAAATAATTGCAGTGGTAGTAAAATCTTTCTCTTACACGTACATATTTAAGATATTTAAAATTTGATATTGGTTAATATTGGTTTTGGAATTTGGTTATGAATTCAATTTAAGAGGTGGCAAACATTATTATTGTGCATTAAAACATGTGAGATTAGAATTACAACCAATGTGCCCTAAGGTGTTGAACAGTTTGGTCTCCACAGTAACTAATAATGCTGTAGGTGTTGGCGAAAGTTCAATTTTTTGACTTACACGAAAAAGTTACATTTGTTTTTGGTTGGATAAACATGTTGAAGAATCTAATATACATCCGTTAGGTAGATGGAATATTTAACAGCAAGACCATGGCCTTATCTTCAAATAAAGGGAATCATATTTACTAGAAACATTACCCCTCTATGGATTCATTCTCCCAATAATGGACTTGAGTCAACTATGTACGCATCCAATCTTTATACTTAATTACCACTCGAAAATAACATATGGAATCAATTAAATGGACTAAAGTTTGAATTTTGGACTCCCAATATTCACAAATTATAAATATAAAAAGGTTATGATTAGTATTGAACTTTCATGCTTGTGTTTGTCAAAAAGGTATCCATCAAGTTTTTTATTTTTTAAAAATTTACATATTCATTAGACACAAAATTAATAGTGTTTCATTTCACATAAAATCCAAATCTACTCCTTTAGATCAATTAACTTTTTTAAAAAAAAAAAATCAAAATTTTAAGGATTAAACCAAAAAAAAAAAAAGAAAAAAGAAAAGGCTGCGTCGATCATTCAAGAGCATGAACAAAATTTCAGATGAGGAAATTAAAATGAAATGAAAAGTATAGTATAAAACTTTTTTTTTTTTTTGGAAAAAAAGAGAGAGAGAAAGTTGATAATGAAGAACATGAGATAGTTTTCCATTAGATGAAAGGTTGTACAAAAAGAAAAGAAAAGAAATCATATGAGATTAATTCAAAGAGAGAGAGATTATTACGTGGATGGATGGAGATGGAGCAGAGGCAGGGAAAGCTAGATGTAAATATGGAGGTTGAGCATGACAAGGAACAAAATAAGGAGAAGAAGAAAGACAACAGCATGAACAAAAATAGAAGCAAAACTTGTCTTCAAGTTCATGAACTCAAGTGGGCGTTCTGATCCAGGCATCTGTATTATCATCCCTGGCGATAGAAACGCGAACAATATTGAAGCTATCAATGGACCTGCCAAATCATTCATTCTTCTTCTCTTCTCTTCTCTTCTCTTCTCTAAATATATCCCAATACAATTTATATCAACATTACCATATGTATTTGTTTCTGAAGAATTGGACGAATAAGAATTTCTTGTAAAACCAAC

mRNA sequence

GTTCACCGCTATAACACATTCCAATGCTTTTCTTCTTCATCTTGCTTCATTAATTCCTCATTTCCTTTAACACACAGTCCCATAATAATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTGGTGCTCTTTGTTCTCTTAACTCCTGGACTGTTGGTTCAGATGCCGGGCAAGAACCGGTTCGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCCATTCTGATGAAAGGTTGTACAAAAAGAAAAGAAAAGAAATCATATGAGATTAATTCAAAGAGAGAGAGATTATTACGTGGATGGATGGAGATGGAGCAGAGGCAGGGAAAGCTAGATGTAAATATGGAGGTTGAGCATGACAAGGAACAAAATAAGGAGAAGAAGAAAGACAACAGCATGAACAAAAATAGAAGCAAAACTTGTCTTCAAGTTCATGAACTCAAGTGGGCGTTCTGATCCAGGCATCTGTATTATCATCCCTGGCGATAGAAACGCGAACAATATTGAAGCTATCAATGGACCTGCCAAATCATTCATTCTTCTTCTCTTCTCTTCTCTTCTCTTCTCTAAATATATCCCAATACAATTTATATCAACATTACCATATGTATTTGTTTCTGAAGAATTGGACGAATAAGAATTTCTTGTAAAACCAAC

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTGGTGCTCTTTGTTCTCTTAACTCCTGGACTGTTGGTTCAGATGCCGGGCAAGAACCGGTTCGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCCATTCTGATGAAAGGTTGTACAAAAAGAAAAGAAAAGAAATCATATGAGATTAATTCAAAGAGAGAGAGATTATTACGTGGATGGATGGAGATGGAGCAGAGGCAGGGAAAGCTAGATGTAAATATGGAGGTTGAGCATGACAAGGAACAAAATAAGGAGAAGAAGAAAGACAACAGCATGAACAAAAATAGAAGCAAAACTTGTCTTCAAGTTCATGAACTCAAGTGGGCGTTCTGA

Protein sequence

MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEINSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHELKWAF
Homology
BLAST of Bhi04G001993 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-15
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILM 47
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S+++
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIV 46

BLAST of Bhi04G001993 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILM 47
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS+++
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIV 46

BLAST of Bhi04G001993 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILM 47
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SIL+
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILV 46

BLAST of Bhi04G001993 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILM 47
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SIL+
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILV 46

BLAST of Bhi04G001993 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 2  ADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILM 47
          ADWGPV VAV LF+LL+PGLL Q+P + R +EFGN  TSG+SIL+
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILV 47

BLAST of Bhi04G001993 vs. ExPASy TrEMBL
Match: A0A7J9D6A4 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020262 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEI 60
           M+DWGPVF+AVVLF+LLTPGLL+Q+PG++R+VEFGNFQTSGVSIL+              
Sbjct: 1   MSDWGPVFIAVVLFILLTPGLLIQVPGRSRYVEFGNFQTSGVSILI-------------- 60

Query: 61  NSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHE 117
             +R  LL            LD+ ++++++KEQ++E+  +NSM+KN S TC  VH+
Sbjct: 61  --ERVPLL------------LDIEVDMKNNKEQDEEQSIENSMHKNGSHTCFHVHK 88

BLAST of Bhi04G001993 vs. ExPASy TrEMBL
Match: A0A7J8TG79 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_026006 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEI 60
           M+DWGPVF+AVVLF+LLTPGLL+Q+PG++R+VEFGNFQTSGVSIL+              
Sbjct: 1   MSDWGPVFIAVVLFILLTPGLLIQVPGRSRYVEFGNFQTSGVSILI-------------- 60

Query: 61  NSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHE 117
             +R  LL            LD+ ++++++KEQ++E+  +NSM+KN S TC  VH+
Sbjct: 61  --ERVPLL------------LDIEVDMKNNKEQDEEQSIENSMHKNGSHTCFHVHK 88

BLAST of Bhi04G001993 vs. ExPASy TrEMBL
Match: A0A7J8WCY5 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_024117 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEI 60
           M+DWGPVF+AVVLF+LLTPGLL+Q+PG++R+VEFGNFQTSGVSIL+              
Sbjct: 1   MSDWGPVFIAVVLFILLTPGLLIQVPGRSRYVEFGNFQTSGVSILI-------------- 60

Query: 61  NSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHE 117
             +R  LL            LD+ ++++++KEQ++E+  +NSM+KN S TC  VH+
Sbjct: 61  --ERVPLL------------LDIEVDMKNNKEQDEEQSIENSMHKNGSHTCFHVHK 88

BLAST of Bhi04G001993 vs. ExPASy TrEMBL
Match: A0A7J9MQN9 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_025888 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.5e-18
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEI 60
           M+DWGPVF+AVVLF+LLTPGLL+Q+PG++R+VEFGNFQTSGVSIL+              
Sbjct: 1   MSDWGPVFIAVVLFILLTPGLLIQVPGRSRYVEFGNFQTSGVSILI-------------- 60

Query: 61  NSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHE 117
             +R  LL            LD+ ++++++KEQ++E+  +NSM+KN S TC  VH+
Sbjct: 61  --ERVPLL------------LDIEVDMKNNKEQDEEQGIENSMHKNGSHTCFHVHK 88

BLAST of Bhi04G001993 vs. ExPASy TrEMBL
Match: A0A7J8N5F0 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_002446 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.5e-18
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0

Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILMKGCTKRKEKKSYEI 60
           M+DWGPVF+AVVLF+LLTPGLL+Q+PG++R+VEFGNFQTSGVSIL+              
Sbjct: 1   MSDWGPVFIAVVLFILLTPGLLIQVPGRSRYVEFGNFQTSGVSILI-------------- 60

Query: 61  NSKRERLLRGWMEMEQRQGKLDVNMEVEHDKEQNKEKKKDNSMNKNRSKTCLQVHE 117
             +R  LL            LD+ +++++ KEQ++E+  +NSM+KN S TC  VH+
Sbjct: 61  --ERVPLL------------LDIEVDMKNKKEQDEEQSIENSMHKNGSHTCFHVHK 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G27030.13.9e-1573.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G08391.11.9e-1467.39Protein of unknown function (DUF 3339) [more]
AT3G48660.12.5e-1476.09Protein of unknown function (DUF 3339) [more]
AT5G63500.14.8e-1369.57Protein of unknown function (DUF 3339) [more]
AT5G40980.11.8e-1266.67Protein of unknown function (DUF 3339) [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J9D6A43.8e-1848.28Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020262 PE=4 ... [more]
A0A7J8TG793.8e-1848.28Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_026006 PE=4 SV... [more]
A0A7J8WCY53.8e-1848.28Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_024117 PE=4... [more]
A0A7J9MQN96.5e-1848.28Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_025888 PE=4... [more]
A0A7J8N5F06.5e-1848.28Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_002446 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..46
e-value: 1.9E-23
score: 82.4
IPR021775Protein of unknown function DUF3339PANTHERPTHR33128OS05G0103400 PROTEINcoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..109
NoneNo IPR availablePANTHERPTHR33128:SF66SUBFAMILY NOT NAMEDcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001993Bhi04M001993mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane