Bhi04G001650 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001650
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Histone H3
Location	chr4: 55499054 .. 55499413 (-)
RNA-Seq Expression	Bhi04G001650
Synteny	Bhi04G001650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCACCAAACAAACAGCCCGTAAATCGACCGGCGGCAAGGCTCCCCGGAAGCAATTGGCGACGAAGGCTGCTCGGAAGTCGGCTCCGGCGACCGGAGGAGTAAAGAAGCCGCACAGATTTAGGCCGGGGACGGTGGCGCTGAGGGAGATTAGAAAGTACCAGAAGAGCACAGAGCTTCTGATCCGAAAGCTTCCGTTCCAGCGGCTAGTTAGAGAGATCGCTCAGGATTTCAAGACGGATCTTCGNATAACTCAAACTATTAGGGGGTACAATTTGAAAATTTCCCCATTTCCTATTTCAAAAGGAAAAAAGAAAATTGAAAAAAATACTTTGGCGCCAAAACTAATGTCTTAG

mRNA sequence

ATGGCTCGCACCAAACAAACAGCCCGTAAATCGACCGGCGGCAAGGCTCCCCGGAAGCAATTGGCGACGAAGGCTGCTCGGAAGTCGGCTCCGGCGACCGGAGGAGTAAAGAAGCCGCACAGATTTAGGCCGGGGACGGTGGCGCTGAGGGAGATTAGAAAGTACCAGAAGAGCACAGAGCTTCTGATCCGAAAGCTTCCGTTCCAGCGGCTAGTTAGAGAGATCGCTCAGGATTTCAAGACGGATCTTCGNATAACTCAAACTATTAGGGGGTACAATTTGAAAATTTCCCCATTTCCTATTTCAAAAGGAAAAAAGAAAATTGAAAAAAATACTTTGGCGCCAAAACTAATGTCTTAG

Coding sequence (CDS)

ATGGCTCGCACCAAACAAACAGCCCGTAAATCGACCGGCGGCAAGGCTCCCCGGAAGCAATTGGCGACGAAGGCTGCTCGGAAGTCGGCTCCGGCGACCGGAGGAGTAAAGAAGCCGCACAGATTTAGGCCGGGGACGGTGGCGCTGAGGGAGATTAGAAAGTACCAGAAGAGCACAGAGCTTCTGATCCGAAAGCTTCCGTTCCAGCGGCTAGTTAGAGAGATCGCTCAGGATTTCAAGACGGATCTTCGNATAACTCAAACTATTAGGGGGTACAATTTGAAAATTTCCCCATTTCCTATTTCAAAAGGAAAAAAGAAAATTGAAAAAAATACTTTGGCGCCAAAACTAATGTCTTAG

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRITQTIRGYNLKISPFPISKGKKKIEKNTLAPKLMS

Homology

[Close]

BLAST of Bhi04G001650 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. TAIR 10
Match: AT3G27360.1 (Histone superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. TAIR 10
Match: AT5G10390.1 (Histone superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. TAIR 10
Match: AT5G10400.1 (Histone superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. TAIR 10
Match: AT5G65360.1 (Histone superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot
Match: Q6LBE3 (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot
Match: Q6LCK1 (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot
Match: Q71T45 (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot
Match: P69246 (Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLR 85
          LLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLR 84

[Close]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL
Match: A0A7J7TD57 (Histone H3 OS=Rhinolophus ferrumequinum OX=59479 GN=mRhiFer1_006172 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 85/106 (80.19%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRITQTIRGYNLKISPFPISKGKK 107
           LLIRKLPFQRLVREIAQDFKTDLR    I    + I P  I   ++
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAIHAKRVTIMPKDIQLARR 106

[Close]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL
Match: A0A7I8JC07 (Histone H3 OS=Spirodela intermedia OX=51605 GN=SI7747_11014038 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLRITQT 89
          LLIRKLPFQRLVREIAQDFKTDLR   T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQST 88

[Close]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL
Match: A0A443N2D0 (Histone H3 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00093600 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLRITQT 89
          LLIRKLPFQRLVREIAQDFKTDLR   T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQST 88

[Close]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL
Match: A0A444EH72 (Histone H3 OS=Ensete ventricosum OX=4639 GN=GW17_00026784 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61 LLIRKLPFQRLVREIAQDFKTDLRITQT 89
          LLIRKLPFQRLVREIAQDFKTDLR   T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQST 88

[Close]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL
Match: A0A3S3N064 (Histone H3 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01157800 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 440 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 499

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRITQT 89
           LLIRKLPFQRLVREIAQDFKTDLR   T
Sbjct: 500 LLIRKLPFQRLVREIAQDFKTDLRFQST 527

The following BLAST results are available for this feature:

BLAST of Bhi04G001650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09200.1	8.5e-39	100.00	Histone superfamily protein	[more]
AT3G27360.1	8.5e-39	100.00	Histone superfamily protein	[more]
AT5G10390.1	8.5e-39	100.00	Histone superfamily protein	[more]
AT5G10400.1	8.5e-39	100.00	Histone superfamily protein	[more]
AT5G65360.1	8.5e-39	100.00	Histone superfamily protein	[more]

BLAST of Bhi04G001650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59226	1.2e-37	100.00	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
Q6LBE3	1.2e-37	100.00	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
Q6LCK1	1.2e-37	100.00	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
Q71T45	1.2e-37	100.00	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
P69246	1.2e-37	100.00	Histone H3.2 OS=Zea mays OX=4577 GN=H3C2 PE=1 SV=2	[more]

BLAST of Bhi04G001650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7TD57	1.5e-35	80.19	Histone H3 OS=Rhinolophus ferrumequinum OX=59479 GN=mRhiFer1_006172 PE=3 SV=1	[more]
A0A7I8JC07	1.5e-35	96.59	Histone H3 OS=Spirodela intermedia OX=51605 GN=SI7747_11014038 PE=3 SV=1	[more]
A0A443N2D0	1.5e-35	96.59	Histone H3 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00093600 PE=3...	[more]
A0A444EH72	1.5e-35	96.59	Histone H3 OS=Ensete ventricosum OX=4639 GN=GW17_00026784 PE=3 SV=1	[more]
A0A3S3N064	1.5e-35	96.59	Histone H3 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01157800 PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 58..75 score: 97.46 coord: 34..55 score: 89.33 coord: 17..31 score: 92.32 coord: 3..17 score: 97.1
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..94 e-value: 6.7E-11 score: 52.2
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..86
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..91 e-value: 1.0E-39 score: 137.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..87
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..87 e-value: 2.4E-25 score: 89.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001650	Bhi04M001650	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity