Bhi04G001643 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001643
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Dehydrin
Location	chr4: 55256231 .. 55256398 (-)
RNA-Seq Expression	Bhi04G001643
Synteny	Bhi04G001643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGAAGATGACGGTCGTGGAGGGAGGAGGAGGAAGGGGCTGAAGGAGAAGGTCCAGGAAAAGATGCCAAGACATCATCATGAGCCCCAGGCAATGTCAACCACAACGTCGAGTGGTTATTCGTCGGCCCAGTACGATGGGCAGCATGAGAAGATAGGAACAATGTAG

mRNA sequence

TCGGAAGATGACGGTCGTGGAGGGAGGAGGAGGAAGGGGCTGAAGGAGAAGGTCCAGGAAAAGATGCCAAGACATCATCATGAGCCCCAGGCAATGTCAACCACAACGTCGAGTGGTTATTCGTCGGCCCAGTACGATGGGCAGCATGAGAAGATAGGAACAATGTAG

Coding sequence (CDS)

TCGGAAGATGACGGTCGTGGAGGGAGGAGGAGGAAGGGGCTGAAGGAGAAGGTCCAGGAAAAGATGCCAAGACATCATCATGAGCCCCAGGCAATGTCAACCACAACGTCGAGTGGTTATTCGTCGGCCCAGTACGATGGGCAGCATGAGAAGATAGGAACAATGTAG

Protein sequence

SEDDGRGGRRRKGLKEKVQEKMPRHHHEPQAMSTTTSSGYSSAQYDGQHEKIGTM

Homology

[Close]

BLAST of Bhi04G001643 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 50.1 bits (118), Expect = 6.8e-07
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHHH---EPQAMSTTTSSGYSSAQYDGQ-HEKIGTM 56
           SEDDG+GGRR+KG+ +K++EK+P HH    + QAM     SGY +  Y G+ HEK G M
Sbjct: 117 SEDDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMM 174

[Close]

BLAST of Bhi04G001643 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.6e-06
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHHH---EPQAMSTTTSSGYSSAQYDGQ-HEKIGTM 56
           S DDG+GGRR+KG+ +K++EK+P HH    + QAM     SGY +  Y G+ HEK G M
Sbjct: 116 SSDDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMM 173

[Close]

BLAST of Bhi04G001643 vs. TAIR 10
Match: AT3G50980.1 (dehydrin xero 1 )

HSP 1 Score: 43.1 bits (100), Expect = 8.3e-05
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1   SEDDGRGGRRR--KGLKEKVQEKMPRHHHEPQAMSTTTSSGYSSAQYDG---QHEKIGTM 56
           SEDDG GGRRR  KG+ EK++EK+P HH      + T+S G ++  YD     HEK G M
Sbjct: 61  SEDDGLGGRRRKKKGITEKIKEKLPGHHDS----NKTSSLGSTTTAYDTGTVHHEKKGMM 116

[Close]

BLAST of Bhi04G001643 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 42.0 bits (97), Expect = 1.8e-04
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKM-PRHHHEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG+GGRR+K +KEK++EK     H + Q  +T T++G   A  D  HEK G +
Sbjct: 116 SEDDGQGGRRKKSIKEKIKEKFGSGKHKDEQTPATATTTG--PATTDQPHEKKGIL 169

[Close]

BLAST of Bhi04G001643 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 9.5e-06
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHHH---EPQAMSTTTSSGYSSAQYDGQ-HEKIGTM 56
           SEDDG+GGRR+KG+ +K++EK+P HH    + QAM     SGY +  Y G+ HEK G M
Sbjct: 117 SEDDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMM 174

[Close]

BLAST of Bhi04G001643 vs. ExPASy Swiss-Prot
Match: P12950 (Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-05
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHHHEPQAMSTTTSSGYSSAQYDG 48
           SEDDG GGRR+KG+KEK++EK+P  H + Q  + TT   Y    + G
Sbjct: 84  SEDDGMGGRRKKGIKEKIKEKLPGGHKDDQHATATTGGAYGQQGHTG 130

[Close]

BLAST of Bhi04G001643 vs. ExPASy Swiss-Prot
Match: Q00742 (Dehydrin Rab15 OS=Triticum aestivum OX=4565 GN=RAB15 PE=2 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 8.9e-04
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHHHE-PQAMSTTTSSG 40
           SEDDG GGRR+KG+KEK++EK+P  H +  Q M+T T +G
Sbjct: 64  SEDDGMGGRRKKGMKEKIKEKLPGGHKDNQQHMATGTGTG 103

[Close]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL
Match: A0A5D3CYN8 (Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMP-RHHHEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG GGRR+KGLKEKV+EK+P RHHHE QA+STTT  GY+SA++ GQHEK G M
Sbjct: 111 SEDDGHGGRRKKGLKEKVKEKLPGRHHHEGQAVSTTTPGGYASAEHGGQHEKKGIM 166

[Close]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL
Match: A0A1S3BTX2 (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMP-RHHHEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG GGRR+KGLKEKV+EK+P RHHHE QA+STTT  GY+SA++ GQHEK G M
Sbjct: 111 SEDDGHGGRRKKGLKEKVKEKLPGRHHHEGQAVSTTTPGGYASAEHGGQHEKKGIM 166

[Close]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL
Match: A0A0A0KWM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHH-HEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG GGRR+KGLKEKV+EK+P HH HE QA+STTT  GY+SA+Y GQHEK G M
Sbjct: 111 SEDDGHGGRRKKGLKEKVKEKLPGHHRHEEQAVSTTTPGGYTSAEYGGQHEKKGIM 166

[Close]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL
Match: A0A6J1FRT8 (dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.6e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHH---HEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG GGRR+KGLKEK++EK+P HH    +P A STTT  GYSS ++ GQHEK G M
Sbjct: 104 SEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIM 161

[Close]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL
Match: A0A6J1J0Z6 (dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   SEDDGRGGRRRKGLKEKVQEKMPRHH---HEPQAMSTTTSSGYSSAQYDGQHEKIGTM 56
           SEDDG GGRR+KGLKEK++EK+P HH    +PQA STTT  GYSS ++ GQ+EK G M
Sbjct: 104 SEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIM 161

The following BLAST results are available for this feature:

BLAST of Bhi04G001643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66400.1	6.8e-07	50.85	Dehydrin family protein	[more]
AT5G66400.2	2.6e-06	49.15	Dehydrin family protein	[more]
AT3G50980.1	8.3e-05	48.33	dehydrin xero 1	[more]
AT2G21490.1	1.8e-04	46.43	dehydrin LEA	[more]

BLAST of Bhi04G001643 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30185	9.5e-06	50.85	Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1	[more]
P12950	6.2e-05	48.94	Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2	[more]
Q00742	8.9e-04	57.50	Dehydrin Rab15 OS=Triticum aestivum OX=4565 GN=RAB15 PE=2 SV=1	[more]

BLAST of Bhi04G001643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYN8	3.2e-12	73.21	Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 ...	[more]
A0A1S3BTX2	3.2e-12	73.21	dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1	[more]
A0A0A0KWM9	4.2e-12	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1	[more]
A0A6J1FRT8	6.6e-10	63.79	dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1	[more]
A0A6J1J0Z6	8.7e-10	63.79	dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 1..55 e-value: 1.4E-14 score: 55.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001643	Bhi04M001643	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009415	response to water
cellular_component	GO:0005829	cytosol