Bhi04G001581 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001581
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Integrase
Location	chr4: 51094288 .. 51094548 (+)
RNA-Seq Expression	Bhi04G001581
Synteny	Bhi04G001581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTAGAGATTCAGGCAGTGGCGTCATTTTCATCTACATCACCATCTTCCACAAGTGATGATAATACGTCACCAAGGAGAATGAGAAATATTCAAGAAATTTATAATGCTACTAGAAGAATTGATGATGATGTTGCTTATTTTGCATTATTTTCCAGTGTTGATCCTATAAATTTTGTTGAGGCGGTCCGAGATGAAAAATGGAAGATTGCAATGGATCAAGAAATTGATGCAATAAAAAGAAATGAAAATGGGAGTTGA

mRNA sequence

CAAGTAGAGATTCAGGCAGTGGCGTCATTTTCATCTACATCACCATCTTCCACAAGTGATGATAATACGTCACCAAGGAGAATGAGAAATATTCAAGAAATTTATAATGCTACTAGAAGAATTGATGATGATGTTGCTTATTTTGCATTATTTTCCAGTGTTGATCCTATAAATTTTGTTGAGGCGGTCCGAGATGAAAAATGGAAGATTGCAATGGATCAAGAAATTGATGCAATAAAAAGAAATGAAAATGGGAGTTGA

Coding sequence (CDS)

CAAGTAGAGATTCAGGCAGTGGCGTCATTTTCATCTACATCACCATCTTCCACAAGTGATGATAATACGTCACCAAGGAGAATGAGAAATATTCAAGAAATTTATAATGCTACTAGAAGAATTGATGATGATGTTGCTTATTTTGCATTATTTTCCAGTGTTGATCCTATAAATTTTGTTGAGGCGGTCCGAGATGAAAAATGGAAGATTGCAATGGATCAAGAAATTGATGCAATAAAAAGAAATGAAAATGGGAGTTGA

Protein sequence

QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDDVAYFALFSSVDPINFVEAVRDEKWKIAMDQEIDAIKRNENGS

Homology

[Close]

BLAST of Bhi04G001581 vs. ExPASy TrEMBL
Match: A0A5D3CVS4 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold189G00110 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-23
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDD-VAYFALFSSVDPINF 60
           Q EIQAV S SS++PSSTSD+  SPRRMR+IQEIYN T RI+DD  A FALF+ VDP+ F
Sbjct: 534 QAEIQAVESSSSSTPSSTSDNEISPRRMRSIQEIYNTTNRINDDHFANFALFAGVDPVTF 593

Query: 61  VEAVRDEKWKIAMDQEIDAIKRNE 84
            EA++DEKWKIAMDQEIDAI+RNE
Sbjct: 594 DEAIQDEKWKIAMDQEIDAIRRNE 617

[Close]

BLAST of Bhi04G001581 vs. ExPASy TrEMBL
Match: A0A5A7TCS4 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00410 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-23
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDD-VAYFALFSSVDPINF 60
           Q EIQAV S SS++PSSTSD+  SPRRMR+IQEIYN T RI+DD  A FALF+ VDP+ F
Sbjct: 534 QAEIQAVESSSSSTPSSTSDNEISPRRMRSIQEIYNTTNRINDDHFANFALFAGVDPVTF 593

Query: 61  VEAVRDEKWKIAMDQEIDAIKRNE 84
            EA++DEKWKIAMDQEIDAI+RNE
Sbjct: 594 DEAIQDEKWKIAMDQEIDAIRRNE 617

[Close]

BLAST of Bhi04G001581 vs. ExPASy TrEMBL
Match: A0A5D3CAM0 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00780 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.2e-23
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDD-VAYFALFSSVDPINF 60
           Q EIQAV S SS++ SSTSDD  SPRRMR+IQEIYN T RI+DD  A FALF+ VDP+ F
Sbjct: 146 QAEIQAVESSSSSTSSSTSDDEISPRRMRSIQEIYNTTNRINDDHFANFALFAGVDPVTF 205

Query: 61  VEAVRDEKWKIAMDQEIDAIKRNE 84
            EA++DEKWKIAMDQEIDAI+RNE
Sbjct: 206 DEAIQDEKWKIAMDQEIDAIRRNE 229

[Close]

BLAST of Bhi04G001581 vs. ExPASy TrEMBL
Match: A0A5A7TAB7 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001670 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDD-VAYFALFSSVDPINF 60
           QVEIQAV + SS+ PSSTSDD  SPRR+R+IQ+IYNAT RI+DD  A FALF+ VDP+ F
Sbjct: 307 QVEIQAVETSSSSMPSSTSDDEISPRRIRSIQKIYNATNRINDDHFANFALFAGVDPVTF 366

Query: 61  VEAVRDEKWKIAMDQEIDAIKRNE 84
            EA++DEKWKI MDQEIDAI+RNE
Sbjct: 367 DEAIQDEKWKITMDQEIDAIRRNE 390

[Close]

BLAST of Bhi04G001581 vs. ExPASy TrEMBL
Match: A0A5D3D8G6 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00640 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   QVEIQAVASFSSTSPSSTSDDNTSPRRMRNIQEIYNATRRIDDD-VAYFALFSSVDPINF 60
           QVEIQAV + SS+ PSSTSDD  SPRR+R+IQ+IYNAT RI+DD  A FALF+ VDP+ F
Sbjct: 307 QVEIQAVETSSSSMPSSTSDDEISPRRIRSIQKIYNATNRINDDHFANFALFAGVDPVTF 366

Query: 61  VEAVRDEKWKIAMDQEIDAIKRNE 84
            EA++DEKWKI MDQEIDAI+RNE
Sbjct: 367 DEAIQDEKWKITMDQEIDAIRRNE 390

The following BLAST results are available for this feature:

BLAST of Bhi04G001581 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001581 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVS4	3.7e-23	72.62	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold189G00110 PE=4...	[more]
A0A5A7TCS4	3.7e-23	72.62	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00410 PE=4...	[more]
A0A5D3CAM0	8.2e-23	72.62	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00780 PE=4...	[more]
A0A5A7TAB7	1.1e-22	71.43	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001670 PE=...	[more]
A0A5D3D8G6	1.1e-22	71.43	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00640 PE=4...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001581	Bhi04M001581	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding