Bhi04G001411 (gene) Wax gourd (B227) v1

Overview
NameBhi04G001411
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionGag/pol protein
Locationchr4: 44590804 .. 44591133 (-)
RNA-Seq ExpressionBhi04G001411
SyntenyBhi04G001411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACGATATTCTCGATAATATTTATTACTCAAGCATAAAGGATAGAACCTCTGTTAGAAAACATGTTCTAGATATGTTGAAAGTAAACAACAATGTCATAGATGAGAAAGCTGATAAAGCACAACAAAGTAAATATGATTTACTCGTTGTTGAAACATGTTTAGTGGAAAATGATAAATTAACCTGGATATTAGATTCAGGGGTCGTTGATCATATTTGCGCTTTTGCTAAAAAAACCAGTTCCTGGAGACAACTTACAGAAGGTGAGACAACCTTTAAGGTTGGGACCGGAGAGGTTGTCTCAGCTAAAGTAGTGGGAGATATGAAGTT

mRNA sequence

GAACGATATTCTCGATAATATTTATTACTCAAGCATAAAGGATAGAACCTCTGTTAGAAAACATGTTCTAGATATGTTGAAAGTAAACAACAATGTCATAGATGAGAAAGCTGATAAAGCACAACAAAGTAAATATGATTTACTCGTTGTTGAAACATGTTTAGTGGAAAATGATAAATTAACCTGGATATTAGATTCAGGGGTCGTTGATCATATTTGCGCTTTTGCTAAAAAAACCAGTTCCTGGAGACAACTTACAGAAGGTGAGACAACCTTTAAGGTTGGGACCGGAGAGGTTGTCTCAGCTAAAGTAGTGGGAGATATGAAGTT

Coding sequence (CDS)

GAACGATATTCTCGATAATATTTATTACTCAAGCATAAAGGATAGAACCTCTGTTAGAAAACATGTTCTAGATATGTTGAAAGTAAACAACAATGTCATAGATGAGAAAGCTGATAAAGCACAACAAAGTAAATATGATTTACTCGTTGTTGAAACATGTTTAGTGGAAAATGATAAATTAACCTGGATATTAGATTCAGGGGTCGTTGATCATATTTGCGCTTTTGCTAAAAAAACCAGTTCCTGGAGACAACTTACAGAAGGTGAGACAACCTTTAAGGTTGGGACCGGAGAGGTTGTCTCAGCTAAAGTAGTGGGAGATATGAAGTT

Protein sequence

NDILDNIYYSSIKDRTSVRKHVLDMLKVNNNVIDEKADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFKVGTGEVVSAKVVGDMK
Homology
[Close]
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match: A0A5D3DMH3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 35  EKADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFKV 94
           +KA+K  Q KYDLLV+ETCLVEN+  TWILDSG  +HIC   ++TSSW++L+EG+ T KV
Sbjct: 200 KKAEKEAQGKYDLLVLETCLVENENSTWILDSGATNHICLSFQETSSWKRLSEGKITLKV 259

Query: 95  GTGEVVSAKVVGDMK 110
           GTGE+VSAK VGD+K
Sbjct: 260 GTGEMVSAKAVGDLK 274

[Close]
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 34  DEKADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFK 93
           ++KA+KA Q KYDLLVVETCLVE D  TWILDSG  +HIC   ++TSSW++L EGE T K
Sbjct: 273 EKKAEKATQGKYDLLVVETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLK 332

Query: 94  VGTGEVVSAKVVGDM 109
           VGTGEVVSA+ VGD+
Sbjct: 333 VGTGEVVSAEAVGDL 347

[Close]
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.2e-20
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 35  EKADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFKV 94
           +KA+K  Q KYDLLV+ETCLVEN+  TWILDSG  +HIC   ++ SSW+ L+EG+ T KV
Sbjct: 276 KKAEKEAQDKYDLLVLETCLVENENSTWILDSGATNHICFSFQENSSWKNLSEGKITLKV 335

Query: 95  GTGEVVSAKVVGDMK 110
           GTGE+VSAKVVGD+K
Sbjct: 336 GTGEMVSAKVVGDLK 350

[Close]
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match: A0A5A7TI12 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002530 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 35  EKADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFKV 94
           +KA+K  Q KYDLLV+ETCLVEN+  TWILDSG  +HIC   +K+SSW++L+EGE + KV
Sbjct: 90  KKAEKEAQVKYDLLVLETCLVENENSTWILDSGATNHICFSFQKSSSWKRLSEGEISLKV 149

Query: 95  GTGEVVSAKVVGDMK 110
           GTGE+VSAK V D+K
Sbjct: 150 GTGEMVSAKAVEDLK 164

[Close]
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match: A0A5D3C7Z2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00130 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 36  KADKAQQSKYDLLVVETCLVENDKLTWILDSGVVDHICAFAKKTSSWRQLTEGETTFKVG 95
           KA+K  Q+KYDLLV+ETCLVEN+   WILDS V +HIC    + SSW++L+EGE T KVG
Sbjct: 156 KAEKETQAKYDLLVLETCLVENENSIWILDSEVTNHICFSFLENSSWKRLSEGEITLKVG 215

Query: 96  TGEVVSAKVVGDMK 110
           TGE+VSAK VGD+K
Sbjct: 216 TGEMVSAKAVGDLK 229

The following BLAST results are available for this feature:
BLAST of Bhi04G001411 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04G001411 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04G001411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DMH33.7e-2065.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G0080... [more]
E2GK514.8e-2068.00Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1[more]
A0A5A7TWX18.2e-2065.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018... [more]
A0A5A7TI126.9e-1964.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G0025... [more]
A0A5D3C7Z22.0e-1864.86Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G0013... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001411Bhi04M001411mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding