Bhi04G001393 (gene) Wax gourd (B227) v1

Overview
NameBhi04G001393
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr4: 43959623 .. 43959778 (+)
RNA-Seq ExpressionBhi04G001393
SyntenyBhi04G001393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACCTCTGTCTTGCTCACTCACTCAGCTGTGGCTTCACCTGAATCAATCGCTGACCCCAACTGGTATGTAGATAGCGGAGCCTCCACTCACATTACTAGTAATCCTACCTTCCTCCAATCCTCCTCCACCTACACAGGTACTGATAAAGTAGTC

mRNA sequence

AACACCTCTGTCTTGCTCACTCACTCAGCTGTGGCTTCACCTGAATCAATCGCTGACCCCAACTGGTATGTAGATAGCGGAGCCTCCACTCACATTACTAGTAATCCTACCTTCCTCCAATCCTCCTCCACCTACACAGGTACTGATAAAGTAGTC

Coding sequence (CDS)

AACACCTCTGTCTTGCTCACTCACTCAGCTGTGGCTTCACCTGAATCAATCGCTGACCCCAACTGGTATGTAGATAGCGGAGCCTCCACTCACATTACTAGTAATCCTACCTTCCTCCAATCCTCCTCCACCTACACAGGTACTGATAAAGTAGTC

Protein sequence

NTSVLLTHSAVASPESIADPNWYVDSGASTHITSNPTFLQSSSTYTGTDKVV
Homology
[Close]
BLAST of Bhi04G001393 vs. ExPASy TrEMBL
Match: A0A438HID7 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045277 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 11  VASPESIADPNWYVDSGASTHITSNPTFLQSSSTYTGTDKV 52
           VA P +IADP+WY DSGASTH+T+NP  L   S Y G DKV
Sbjct: 208 VALPNTIADPSWYFDSGASTHVTNNPDNLSFKSYYNGHDKV 248

[Close]
BLAST of Bhi04G001393 vs. ExPASy TrEMBL
Match: A0A438D9F8 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_102409 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 11  VASPESIADPNWYVDSGASTHITSNPTFLQSSSTYTGTDKV 52
           VA P +IADP+WY DSGASTH+T+NP  L   S Y G DKV
Sbjct: 239 VALPNTIADPSWYFDSGASTHVTNNPDNLSFKSYYNGHDKV 279

[Close]
BLAST of Bhi04G001393 vs. ExPASy TrEMBL
Match: A0A438HIH9 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045251 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 11  VASPESIADPNWYVDSGASTHITSNPTFLQSSSTYTGTDKV 52
           VA P +IADP+WY DSGASTH+T+NP  L   S Y G DKV
Sbjct: 243 VALPNTIADPSWYFDSGASTHVTNNPDNLSFKSYYNGHDKV 283

[Close]
BLAST of Bhi04G001393 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 7   THSAVASPESIADPNWYVDSGASTHITSNPTFLQSSSTYTGTDKVV 53
           T + V +PE++ DP+WY DSGA++H+T+NP  ++    Y+GT+ V+
Sbjct: 323 TSTTVTTPETVIDPSWYADSGATSHVTANPNNVEQKVDYSGTENVI 368

The following BLAST results are available for this feature:
BLAST of Bhi04G001393 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04G001393 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi04G001393 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438HID71.0e-0463.41CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045277 P... [more]
A0A438D9F81.0e-0463.41CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_102409 P... [more]
A0A438HIH91.0e-0463.41CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045251 P... [more]
A0A6J1DCW43.9e-0443.48uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001393Bhi04M001393mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding