Bhi04G001335 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001335
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	chr4: 42105953 .. 42106301 (-)
RNA-Seq Expression	Bhi04G001335
Synteny	Bhi04G001335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGTCCGGATCAAGCACAGATGGCATTGACTGAGGTTGAACATATGAACACTCCACTAGTTGATCCTTTCAGTGGGAAAGACAGCACAAAGGCATCAAGAATTAGTATGATATGTAAATTTACTTTCTATACGTTATTGAAATAATCTAAAATTTTCATTTCTTTTAGGATCTCGATCACGATCTACAAAGCAAGGAAGGCGTGTGAGGGGACGTGGTCGGAACATAGAATTGGAGAAATATGTAGAAATCAATGGAAGAATGAAGATTGAAATTGAAGAAGATATGGGAAAACCTATATGTGCTTTTGCCTCCAAAATTGCATTGACGGTTAATATGAGATAA

mRNA sequence

ATGGTATGTCCGGATCAAGCACAGATGGCATTGACTGAGGTTGAACATATGAACACTCCACTAGTTGATCCTTTCAGTGGGAAAGACAGCACAAAGGCATCAAGAATTAGATCTCGATCACGATCTACAAAGCAAGGAAGGCGTGTGAGGGGACGTGGTCGGAACATAGAATTGGAGAAATATGTAGAAATCAATGGAAGAATGAAGATTGAAATTGAAGAAGATATGGGAAAACCTATATGTGCTTTTGCCTCCAAAATTGCATTGACGGTTAATATGAGATAA

Coding sequence (CDS)

ATGGTATGTCCGGATCAAGCACAGATGGCATTGACTGAGGTTGAACATATGAACACTCCACTAGTTGATCCTTTCAGTGGGAAAGACAGCACAAAGGCATCAAGAATTAGATCTCGATCACGATCTACAAAGCAAGGAAGGCGTGTGAGGGGACGTGGTCGGAACATAGAATTGGAGAAATATGTAGAAATCAATGGAAGAATGAAGATTGAAATTGAAGAAGATATGGGAAAACCTATATGTGCTTTTGCCTCCAAAATTGCATTGACGGTTAATATGAGATAA

Protein sequence

MVCPDQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEINGRMKIEIEEDMGKPICAFASKIALTVNMR

Homology

[Close]

BLAST of Bhi04G001335 vs. ExPASy TrEMBL
Match: A0A5A7TFG0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00210 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 5   DQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEI 64
           DQ ++ LTEVE  NTP VDP +   S   ++        K+GR VRG GRNIEL+K+VE 
Sbjct: 640 DQTRLTLTEVEQTNTPSVDPSTPSGSQLGTK--------KRGRGVRGYGRNIELDKFVEK 699

Query: 65  NGRMKIEIEEDMGKPICAFASKIALTV 92
           +G++KIEI E+ GKP+  FA KIAL +
Sbjct: 700 HGKIKIEINEEEGKPVTTFAPKIALGI 718

[Close]

BLAST of Bhi04G001335 vs. ExPASy TrEMBL
Match: A0A5A7T9T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003190 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 5   DQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEI 64
           DQ ++ LTEVE  NTP +DP +   S   ++        K+GR VRG GRNIEL+K+VE 
Sbjct: 860 DQTRLTLTEVEQTNTPSIDPSTPSGSQLGTK--------KRGRGVRGYGRNIELDKFVEK 919

Query: 65  NGRMKIEIEEDMGKPICAFASKIALTV 92
           +G++KIEI E+ GKP+  FA KIAL +
Sbjct: 920 HGKIKIEINEEEGKPVTTFAPKIALGI 938

[Close]

BLAST of Bhi04G001335 vs. ExPASy TrEMBL
Match: A0A5A7SLD9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002590 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 5   DQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEI 64
           DQAQ+ALTEVE  N P VDP     ST +    S+SR+ K+ R VR  GRNI+L+K+VE 
Sbjct: 45  DQAQLALTEVEQTNPPPVDP-----STPSG---SQSRTKKRERGVREYGRNIKLDKFVEK 104

Query: 65  NGRMKIEIEEDMGKPICAFASKIALTV 92
           +G++KIEI E+ GKP+  FA KIAL +
Sbjct: 105 HGKVKIEINEEEGKPVTTFAPKIALGI 123

[Close]

BLAST of Bhi04G001335 vs. ExPASy TrEMBL
Match: A0A5A7US78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001230 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 5   DQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEI 64
           DQ ++ LTEVE  NTP +DP +   S   ++        K+GR VRG GRNIEL+K+V+ 
Sbjct: 437 DQTRLTLTEVEQTNTPSIDPSTPSGSQLGTK--------KRGRGVRGYGRNIELDKFVQK 496

Query: 65  NGRMKIEIEEDMGKPICAFASKIALTV 92
           +G++KIEI E+ GKP+  F  KIAL +
Sbjct: 497 HGKIKIEINEEEGKPVTTFGPKIALGI 515

[Close]

BLAST of Bhi04G001335 vs. ExPASy TrEMBL
Match: A0A5D3E0V3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002850 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 5   DQAQMALTEVEHMNTPLVDPFSGKDSTKASRIRSRSRSTKQGRRVRGRGRNIELEKYVEI 64
           DQ ++ LTEVE  NTP +DP +   S   ++        K+GR VRG GRNIEL+K+V+ 
Sbjct: 390 DQTRLTLTEVEQTNTPSIDPSTPSGSQLGTK--------KRGRGVRGYGRNIELDKFVQK 449

Query: 65  NGRMKIEIEEDMGKPICAFASKIALTV 92
           +G++KIEI E+ GKP+  F  KIAL +
Sbjct: 450 HGKIKIEINEEEGKPVTTFGPKIALGI 468

The following BLAST results are available for this feature:

BLAST of Bhi04G001335 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001335 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G001335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFG0	7.1e-12	50.57	Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw...	[more]
A0A5A7T9T1	9.3e-12	49.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SLD9	2.1e-11	54.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7US78	6.0e-11	47.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E0V3	6.0e-11	47.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001335	Bhi04M001335	mRNA