Bhi04G001179 (gene) Wax gourd (B227) v1

Overview
NameBhi04G001179
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRWP-RK domain-containing protein
Locationchr4: 37096399 .. 37097592 (-)
RNA-Seq ExpressionBhi04G001179
SyntenyBhi04G001179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAACCCATTCCAGACTTTCAAAATGAGCCGCCGGAGAAACTAGAGCAGCCTCCAAGACGGCCCTCCCTTGCTGCACAGGTTCCTTCCTTTTTACATTTTCTCAGTTTAAAATATTTTACTCGCAAGTTTTTATATATATATTTTTTGAGATAATTATTATTAAGTGATAAAATTATTTAAAATATTTTAAAATAAAAATAAAAATTACTAGACTTATTTTTAAATATAACAAAATATCATTGTCTATTAATTTGATTATTTTCTTATATTTGAATTTTTTTTTTTTACTTTTAAATTTATATTTAATCCAACTTCTCGTCTAGTAAATTACTAACCTATTAATCAACTTCTTAAAATTCTCCAAACAAAATAAAAAGCTTACAATTATCTTAAACATGATATTCTAATTAGTTAAAGATACAATTTTTAAAAATGTGTCCAATTTTAGTTATTATATACTTTTAAAAAATCTTAAATTTATTTCTTCAAAATATTTCTTTTAATAAAATTGATTAAATAATAATAATAATAATTTTCATTGACAATGTGAATATGTTACTAAAATATAGTGTGAAATTTTTAATAGATAGTATTATTTTTCTTTATTTTTGGAAAAATCAACAACAAGCAAAAGTAATGTTCAGGAAAAAGAAAATTTATTTAAAATATAAAGAATTGGGAGTTGGTGATTAATTATATAATATATTTTCTTCAAAGTTCAATAATATATTGAACGTTGAGACTAAAATAATCTGGATAATTAAAATGGTCAGCGACAGAGAACGGGAAGAATGACGGTGAATGATGTATGGGAATATCTTCATCTTCCAATCTCAGAAGCTTCGAAGAAACTGAATGTGTGTAATACGGTGTTGAAGAAAATATGCCGCCGGAGCGGCCTCAGCCGGTGGCCTTACAGAAAGGTGCTATTTCATTCGAAAATTAATTAACACAGAATAAACTCCATTAATCTTATTAATATTAATATGGTTAGATATTATAATTAAATTTACCTTTATCCATCAGCTTATAATTAATCTCACGCAGATACGGAGTTACGAGCGGCGTATAGCGGCACTGAGAGCCACAATGAATTCAAGCTATGGAGACACGAGAGTCCGAGCTGAAGCTGAGATCGAAAGGGTTCAAAAAGAACTTGCTGATTTTTGTGCACGAATCAGAATTTGA

mRNA sequence

ATGGAACAACCCATTCCAGACTTTCAAAATGAGCCGCCGGAGAAACTAGAGCAGCCTCCAAGACGGCCCTCCCTTGCTGCACAGCGACAGAGAACGGGAAGAATGACGGTGAATGATGTATGGGAATATCTTCATCTTCCAATCTCAGAAGCTTCGAAGAAACTGAATGTGTGTAATACGGTGTTGAAGAAAATATGCCGCCGGAGCGGCCTCAGCCGGTGGCCTTACAGAAAGATACGGAGTTACGAGCGGCGTATAGCGGCACTGAGAGCCACAATGAATTCAAGCTATGGAGACACGAGAGTCCGAGCTGAAGCTGAGATCGAAAGGGTTCAAAAAGAACTTGCTGATTTTTGTGCACGAATCAGAATTTGA

Coding sequence (CDS)

ATGGAACAACCCATTCCAGACTTTCAAAATGAGCCGCCGGAGAAACTAGAGCAGCCTCCAAGACGGCCCTCCCTTGCTGCACAGCGACAGAGAACGGGAAGAATGACGGTGAATGATGTATGGGAATATCTTCATCTTCCAATCTCAGAAGCTTCGAAGAAACTGAATGTGTGTAATACGGTGTTGAAGAAAATATGCCGCCGGAGCGGCCTCAGCCGGTGGCCTTACAGAAAGATACGGAGTTACGAGCGGCGTATAGCGGCACTGAGAGCCACAATGAATTCAAGCTATGGAGACACGAGAGTCCGAGCTGAAGCTGAGATCGAAAGGGTTCAAAAAGAACTTGCTGATTTTTGTGCACGAATCAGAATTTGA

Protein sequence

MEQPIPDFQNEPPEKLEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFCARIRI
Homology
BLAST of Bhi04G001179 vs. TAIR 10
Match: AT5G66990.1 (RWP-RK domain-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-08
Identity = 38/123 (30.89%), Postives = 70/123 (56.91%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEKLEQPPRRPSLAAQRQRTG---RMTVNDVWEYLHLPISEASKKLNV 60
           MEQ + +  N   EK  Q  +R  +  + +  G    M+   + +Y ++PI++A+K+LN+
Sbjct: 124 MEQILHEDVNTMKEKTSQ--KRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNI 183

Query: 61  CNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDT---RVRAEAEIERVQKE 118
             T+LKK CR  G+ RWP+RK+ S    IA L+  + ++ G T   ++R   E+  ++K+
Sbjct: 184 GVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLEMEKK 243

BLAST of Bhi04G001179 vs. TAIR 10
Match: AT4G24020.1 (NIN like protein 7 )

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-08
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 42  EYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYG 99
           +Y    + +A+K L VC T +K+ICR+ G+SRWP RKI+   R I  L+  + S  G
Sbjct: 599 QYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSITKLKRVIESVQG 655

BLAST of Bhi04G001179 vs. TAIR 10
Match: AT1G18790.1 (RWP-RK domain-containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-08
Identity = 23/72 (31.94%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 43  YLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRV 102
           Y ++PI++A+++LN+  T+LKK CR  G+ RWP+RK+ S ++ I+ ++        +   
Sbjct: 136 YFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKELEKMEGEENED 195

Query: 103 RAEAEIERVQKE 115
           +    +E+++KE
Sbjct: 196 KLRNALEKLEKE 207

BLAST of Bhi04G001179 vs. TAIR 10
Match: AT3G59580.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-08
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 35  MTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMN 94
           +++N + +Y    + +A+K L VC T LK+ICR+ G+ RWP RKI    R +  ++  ++
Sbjct: 536 VSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSLRKIQTVLD 595

Query: 95  SSYG 99
           S  G
Sbjct: 596 SVQG 599

BLAST of Bhi04G001179 vs. TAIR 10
Match: AT3G59580.2 (Plant regulator RWP-RK family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-08
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 35  MTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMN 94
           +++N + +Y    + +A+K L VC T LK+ICR+ G+ RWP RKI    R +  ++  ++
Sbjct: 536 VSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSLRKIQTVLD 595

Query: 95  SSYG 99
           S  G
Sbjct: 596 SVQG 599

BLAST of Bhi04G001179 vs. ExPASy Swiss-Prot
Match: Q0JC27 (Protein NLP2 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP2 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 13  PEKLEQ-PPRRPSLAAQRQRTGRMTVN-DVW-EYLHLPISEASKKLNVCNTVLKKICRRS 72
           PE  EQ  P     A +++ T    ++ DV  +Y    + +A+K L VC T LK+ICR  
Sbjct: 543 PELAEQVQPSSIGHAEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHH 602

Query: 73  GLSRWPYRKIRSYERRIAALRATMNSSYGDTR 102
           G+SRWP RKI    R +  ++  +NS +G  R
Sbjct: 603 GISRWPSRKINKVNRSLKKIQTVINSVHGVDR 634

BLAST of Bhi04G001179 vs. ExPASy Swiss-Prot
Match: Q9FGD1 (Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 38/123 (30.89%), Postives = 70/123 (56.91%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEKLEQPPRRPSLAAQRQRTG---RMTVNDVWEYLHLPISEASKKLNV 60
           MEQ + +  N   EK  Q  +R  +  + +  G    M+   + +Y ++PI++A+K+LN+
Sbjct: 124 MEQILHEDVNTMKEKTSQ--KRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNI 183

Query: 61  CNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDT---RVRAEAEIERVQKE 118
             T+LKK CR  G+ RWP+RK+ S    IA L+  + ++ G T   ++R   E+  ++K+
Sbjct: 184 GVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLEMEKK 243

BLAST of Bhi04G001179 vs. ExPASy Swiss-Prot
Match: Q5NB82 (Protein NLP3 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 15  KLEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRW 74
           K  +PP R    A++     ++++ + +Y    +  A+K L VC T +K+ICR+ G+SRW
Sbjct: 583 KSNKPPERRRGKAEK----TISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRW 642

Query: 75  PYRKIRSYERRIAALRATMNSSYG 99
           P RKI    R ++ L+  + S  G
Sbjct: 643 PSRKINKVNRSLSKLKQVIESVQG 662

BLAST of Bhi04G001179 vs. ExPASy Swiss-Prot
Match: Q84TH9 (Protein NLP7 OS=Arabidopsis thaliana OX=3702 GN=NLP7 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 42  EYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYG 99
           +Y    + +A+K L VC T +K+ICR+ G+SRWP RKI+   R I  L+  + S  G
Sbjct: 599 QYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSITKLKRVIESVQG 655

BLAST of Bhi04G001179 vs. ExPASy Swiss-Prot
Match: Q9M1B0 (Protein NLP9 OS=Arabidopsis thaliana OX=3702 GN=NLP9 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.7e-07
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 35  MTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMN 94
           +++N + +Y    + +A+K L VC T LK+ICR+ G+ RWP RKI    R +  ++  ++
Sbjct: 536 VSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSLRKIQTVLD 595

Query: 95  SSYG 99
           S  G
Sbjct: 596 SVQG 599

BLAST of Bhi04G001179 vs. ExPASy TrEMBL
Match: A0A5A7V999 (Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00220 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.3e-57
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEK-LEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 60
           MEQ  PD QNEPPE+  EQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN
Sbjct: 246 MEQTTPDCQNEPPEQPEEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 305

Query: 61  TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 120
           TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC
Sbjct: 306 TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 365

Query: 121 ARIRI 125
           ARIRI
Sbjct: 366 ARIRI 370

BLAST of Bhi04G001179 vs. ExPASy TrEMBL
Match: A0A1S3BCY1 (uncharacterized protein LOC103488516 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488516 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.3e-57
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEK-LEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 60
           MEQ  PD QNEPPE+  EQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN
Sbjct: 245 MEQTTPDCQNEPPEQPEEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 304

Query: 61  TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 120
           TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC
Sbjct: 305 TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 364

Query: 121 ARIRI 125
           ARIRI
Sbjct: 365 ARIRI 369

BLAST of Bhi04G001179 vs. ExPASy TrEMBL
Match: A0A1S3BCG6 (protein RKD2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488516 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.3e-57
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEK-LEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 60
           MEQ  PD QNEPPE+  EQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN
Sbjct: 246 MEQTTPDCQNEPPEQPEEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCN 305

Query: 61  TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 120
           TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC
Sbjct: 306 TVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFC 365

Query: 121 ARIRI 125
           ARIRI
Sbjct: 366 ARIRI 370

BLAST of Bhi04G001179 vs. ExPASy TrEMBL
Match: A0A0A0KGT8 (RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G362990 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.6e-56
Identity = 119/126 (94.44%), Postives = 120/126 (95.24%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEK-LEQPP-RRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVC 60
           MEQP PD QNEPPE+  EQPP RRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVC
Sbjct: 41  MEQPTPDCQNEPPEQPEEQPPRRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVC 100

Query: 61  NTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADF 120
           NTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKEL DF
Sbjct: 101 NTVLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELTDF 160

Query: 121 CARIRI 125
           CARIRI
Sbjct: 161 CARIRI 166

BLAST of Bhi04G001179 vs. ExPASy TrEMBL
Match: A0A6J1BQU6 (protein RKD3-like OS=Momordica charantia OX=3673 GN=LOC111004772 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.9e-55
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MEQPIPDFQNEPPEKLEQPPRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNT 60
           M+QP P+FQNEPPE+   PPRRPSLAAQR RTGRMTVNDVW+YLHLPISEASKKLNVCNT
Sbjct: 113 MDQPPPEFQNEPPER---PPRRPSLAAQRARTGRMTVNDVWQYLHLPISEASKKLNVCNT 172

Query: 61  VLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRVRAEAEIERVQKELADFCA 120
           VLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTR RAEAEIERVQKELADFCA
Sbjct: 173 VLKKICRRSGLSRWPYRKIRSYERRIAALRATMNSSYGDTRARAEAEIERVQKELADFCA 232

Query: 121 RIRI 125
            IRI
Sbjct: 233 GIRI 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G66990.13.6e-0830.89RWP-RK domain-containing protein [more]
AT4G24020.14.8e-0842.11NIN like protein 7 [more]
AT1G18790.16.2e-0831.94RWP-RK domain-containing protein [more]
AT3G59580.16.2e-0835.94Plant regulator RWP-RK family protein [more]
AT3G59580.26.2e-0835.94Plant regulator RWP-RK family protein [more]
Match NameE-valueIdentityDescription
Q0JC275.1e-0736.96Protein NLP2 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP2 PE=2 SV=2[more]
Q9FGD15.1e-0730.89Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1[more]
Q5NB826.7e-0733.33Protein NLP3 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP3 PE=3 SV=1[more]
Q84TH96.7e-0742.11Protein NLP7 OS=Arabidopsis thaliana OX=3702 GN=NLP7 PE=1 SV=2[more]
Q9M1B08.7e-0735.94Protein NLP9 OS=Arabidopsis thaliana OX=3702 GN=NLP9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7V9994.3e-5795.20Protein RKD2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BCY14.3e-5795.20uncharacterized protein LOC103488516 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BCG64.3e-5795.20protein RKD2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488516 PE=4 SV=1[more]
A0A0A0KGT83.6e-5694.44RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G362990 PE=4... [more]
A0A6J1BQU68.9e-5591.13protein RKD3-like OS=Momordica charantia OX=3673 GN=LOC111004772 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR46373:SF5RWP-RK DOMAIN PROTEINcoord: 14..121
IPR003035RWP-RK domainPFAMPF02042RWP-RKcoord: 35..81
e-value: 3.1E-20
score: 71.9
IPR003035RWP-RK domainPROSITEPS51519RWP_RKcoord: 22..102
score: 17.586506
IPR044607Transcription factor RKD-likePANTHERPTHR46373PROTEIN RKD4coord: 14..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001179Bhi04M001179mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity