Bhi04G001176 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001176
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	PGG domain-containing protein
Location	chr4: 36964713 .. 36966794 (-)
RNA-Seq Expression	Bhi04G001176
Synteny	Bhi04G001176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTTTCTATCCTGCCACTTGTAATATATTAATCCTCAAGTTGGGAAAGGGAATTATGTGTGAGTAGTGCATATGTACTATCTTGTGGCTGCTAAGAGGAGATAGTTCCTGGCATCTTCATCGAAAATAAAAGTCAAGTACATATCAACCTCAACTTGTGGACTTCATTACTTCATCAAAATCATTTAGCCACCTATAACTAAGCATATGAGAAGGGCTGTATTTCATAAGAAGTTTGGATCAATTGAAAGGTTTTCAAAGTTTATTAGCAACAATTAACAATAATGGCAAAAGCAGGGGCCAAGAAGGATGAAGAGGCAACGGCAGTATCTATAGATACTGAAAGGGAAAGTAGAAAGGATAGAGAAGAGGCAAACCAGGGTTGGATAGAAAGAGATGTTGATTTTGTAATGGTAAGTGTGTTCGATCTCTAATCTGAATTATTCTCTCTAATAATAACACCTTCTCTTCCTCTAGCTATCCATTGTTAGTAGAAGTGTTCAAATGTTTACGTTTTTCTGGCGATAGGTGATAGTGACATTCATCGCAACGGTGGCATTCCAAGCGGGGACGAATCCACCGGGTGGCGTATGGCAAGAGGACAAGAAAGTGAACGGCACCGACTATATAGCAGGGAAATCAATAATGGGTACAAAATCACCTTCTGAGTACATAAAATTCATGGTGGGAGTGACAGTTTGTCTTGCATTTTCAGTGATACAGTTAATTGTCATGTTGTTCAACTGGTATCTCAAAAGTTGGTCGATTAGGAGGGCGATTCTCTACATGCTGATGTTATTAACAATAACGCCGATGGTTGTTGCCTTTTGGTCCTCTCTACTAGCTTTGACACCTGCAGATCTGATGACTGAGATCAAAGCTGGCTTCTGGAGTGTTATAGGAGTTTCTCTGATCGTCCTCCCCTTTGTTCTACTTTACTACCTAACCAAGAAATGTTTATGACTTATATCCTTTTCCTATGTTTTATCTTGTATTTCCTTCATAAAAACTTCAATGTAATTTTCCTTCCTTTAAGTTTTTAGTCAATAAACTTCAATGTAATTTGATTTTTGGGTTTCATATTCATCTCTCTCTCTCCTTTCTACTTCTCACTTCACATCCTCCGTTATTATAATGAATTGAATATGATATCTCGTACTTTTAACCATCTAAGTTGTATTCGTATTTGTCATATGTATGTTTTTTTACGTTTTTAATCCTATGGTTTAGAATTGTTTATTATATATATACTCTCTAATAGTTACATGTTCTCCATCTTCTAATGGACTTGGTTAACATACTATTAGTGAACTACATACATCTTTGTGTTCCTTCTCTATTGCTTTATTTTTTTTATTGTCAATATATTTTCTAACAAATAGAACTCTATATTAATTGTTTTTAAATAAAGTGAAATTTTGAAACTATAACTTTTATAAAATGTTATAACGATTAAATTGAATGTTTAAAAAACATGAAATTTTATCTTTAAAAAAAATCATAAAATATTACTGTCTCTTAGGTTTAGATTTTAATTAAATACATTATTTATGATTCTAGACAAGTAAGTCAATTCTCATTATATAAAAAAAATTTCTGTCACTGTTTGTTTTTTTTTTCTTTTAGCCTTCTAAATAAAATTATTTATTGTTGTTATTATGCGAAAGTTACACTCTTGTTTGTATTGGATGAATTTTGACTTTAATAAGCTTTAAGATATTAATCTCAAAAATCAATTATAATGAAATTAGAAGGTAAAAAAGAACATAAATCAAAATATTAATAAAAATCATTCCAAATCAATCAAAACTCACGTTGCTTTTGAATTTAAAGATAATAGCGTATCCCATTTACCATTGATCTATATTCATGTTACAATTTATTGGATATATATCAACAAAATATTTTAATTTTTGCTGCCAGGTGTGAATGCAGCCATGAACGTCAACTTGCTGTACGGTTGGCTATACACTGAGCCCTTTCTTGAAACCATTTTCCGAGCCGCGGTTTCGGATGCTGTTTTGTTTGTCTGTTTCTTAAGAAATTGCGTTATTAACGAAAACTTTATTCGACAAAGTTGA

mRNA sequence

TTTGTTTCTATCCTGCCACTTGTAATATATTAATCCTCAAGTTGGGAAAGGGAATTATGTGTGAGTAGTGCATATGTACTATCTTGTGGCTGCTAAGAGGAGATAGTTCCTGGCATCTTCATCGAAAATAAAAGTCAAGTACATATCAACCTCAACTTGTGGACTTCATTACTTCATCAAAATCATTTAGCCACCTATAACTAAGCATATGAGAAGGGCTGTATTTCATAAGAAGTTTGGATCAATTGAAAGGTTTTCAAAGTTTATTAGCAACAATTAACAATAATGGCAAAAGCAGGGGCCAAGAAGGATGAAGAGGCAACGGCAGTATCTATAGATACTGAAAGGGAAAGTAGAAAGGATAGAGAAGAGGCAAACCAGGGTTGGATAGAAAGAGATGTTGATTTTGTAATGGTGATAGTGACATTCATCGCAACGGTGGCATTCCAAGCGGGGACGAATCCACCGGGTGGCGTATGGCAAGAGGACAAGAAAGTGAACGGCACCGACTATATAGCAGGGAAATCAATAATGGGTGTGAATGCAGCCATGAACGTCAACTTGCTGTACGGTTGGCTATACACTGAGCCCTTTCTTGAAACCATTTTCCGAGCCGCGGTTTCGGATGCTGTTTTGTTTGTCTGTTTCTTAAGAAATTGCGTTATTAACGAAAACTTTATTCGACAAAGTTGA

Coding sequence (CDS)

ATGGCAAAAGCAGGGGCCAAGAAGGATGAAGAGGCAACGGCAGTATCTATAGATACTGAAAGGGAAAGTAGAAAGGATAGAGAAGAGGCAAACCAGGGTTGGATAGAAAGAGATGTTGATTTTGTAATGGTGATAGTGACATTCATCGCAACGGTGGCATTCCAAGCGGGGACGAATCCACCGGGTGGCGTATGGCAAGAGGACAAGAAAGTGAACGGCACCGACTATATAGCAGGGAAATCAATAATGGGTGTGAATGCAGCCATGAACGTCAACTTGCTGTACGGTTGGCTATACACTGAGCCCTTTCTTGAAACCATTTTCCGAGCCGCGGTTTCGGATGCTGTTTTGTTTGTCTGTTTCTTAAGAAATTGCGTTATTAACGAAAACTTTATTCGACAAAGTTGA

Protein sequence

MAKAGAKKDEEATAVSIDTERESRKDREEANQGWIERDVDFVMVIVTFIATVAFQAGTNPPGGVWQEDKKVNGTDYIAGKSIMGVNAAMNVNLLYGWLYTEPFLETIFRAAVSDAVLFVCFLRNCVINENFIRQS

Homology

[Close]

BLAST of Bhi04G001176 vs. TAIR 10
Match: AT3G13950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 34 WIERDVDFVMVIVTFIATVAFQAGTNPPGGVWQED 69
          W+E+    +MV  T IA ++FQ   NPPGGVWQ D
Sbjct: 29 WLEKTRGNLMVTATVIAGMSFQVMVNPPGGVWQSD 63

[Close]

BLAST of Bhi04G001176 vs. ExPASy TrEMBL
Match: A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MAKAGAKKDEEATAVSIDTERESRKDREEANQGWIE-RDVDFVMVIVTFIATVAFQAGTN 60
          M+KAGA K+EEAT V+IDTE E+RKD EE N GW+   DVDFVM++VTFIA VAFQ GTN
Sbjct: 1  MSKAGA-KNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTN 60

Query: 61 PPGGVWQEDKKVNGTDYIAGKSIM 84
          PPG VWQEDK  NG  + AGKSIM
Sbjct: 61 PPGSVWQEDK--NG--FTAGKSIM 79

[Close]

BLAST of Bhi04G001176 vs. ExPASy TrEMBL
Match: A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.0e-19
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MAKAGAKKDEEATAVSIDTERESRKDREEANQGWIE-RDVDFVMVIVTFIATVAFQAGTN 60
          M+KAGA K+EEAT VSIDT  E++KDREE N GW++  DVDFVMV+VTFIA VAFQ G N
Sbjct: 1  MSKAGA-KNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGIN 60

Query: 61 PPGGVWQEDKKVNGTDYIAGKSIM 84
          PPG VWQEDK  NG  + AGKSIM
Sbjct: 61 PPGSVWQEDK--NG--FTAGKSIM 79

[Close]

BLAST of Bhi04G001176 vs. ExPASy TrEMBL
Match: A0A5A7VCJ4 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00270 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MAKAGAKKDEEATAVSIDTERESRKDREEANQGWIE-RDVDFVMVIVTFIATVAFQAGTN 60
          M+KAGA K+EEAT V+IDTE E+RKD EE N GW+   DVDFVM++VTFIA VAFQ GTN
Sbjct: 1  MSKAGA-KNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTN 60

Query: 61 PPGGVWQEDK 70
          PPG VWQEDK
Sbjct: 61 PPGSVWQEDK 69

[Close]

BLAST of Bhi04G001176 vs. ExPASy TrEMBL
Match: A0A5A7VAU9 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00280 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 11  EATAVSID-TERESRKDREEANQGWIERDVDFVMVIVTFIATVAFQAGTNPPGGVWQEDK 70
           E+ A++ID TE    K++   N  WI  D DF+MV+ TFIATVAFQ GTNPPGGVWQED 
Sbjct: 9   ESVAITIDTTETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDD 68

Query: 71  KVNGTDYIAGKSIMGVNAAMNVNLLYGWLYTEPFLETIFRAAVSDAVLFV 120
           K     Y AGKSIM   +  + +   G+L T         +A+  AVLF+
Sbjct: 69  KQG--KYFAGKSIMATKSPSDFS---GYLVT--ITACFVFSAMQFAVLFL 111

[Close]

BLAST of Bhi04G001176 vs. ExPASy TrEMBL
Match: A0A1S3BD33 (uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 11  EATAVSID-TERESRKDREEANQGWIERDVDFVMVIVTFIATVAFQAGTNPPGGVWQEDK 70
           E+ A++ID TE    K++   N  WI  D DF+MV+ TFIATVAFQ GTNPPGGVWQED 
Sbjct: 9   ESVAITIDTTETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDD 68

Query: 71  KVNGTDYIAGKSIMGVNAAMNVNLLYGWLYTEPFLETIFRAAVSDAVLFV 120
           K     Y AGKSIM   +  + +   G+L T         +A+  AVLF+
Sbjct: 69  KQG--KYFAGKSIMATKSPSDFS---GYLVT--ITACFVFSAMQFAVLFL 111

The following BLAST results are available for this feature:

BLAST of Bhi04G001176 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13950.1	2.0e-04	51.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

BLAST of Bhi04G001176 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi04G001176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCY4	2.3e-19	70.24	uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=...	[more]
A0A0A0KIL3	5.0e-19	70.24	PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV...	[more]
A0A5A7VCJ4	2.1e-17	72.86	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VAU9	1.1e-13	47.27	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BD33	1.1e-13	47.27	uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 33..84 e-value: 6.1E-12 score: 45.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001176	Bhi04M001176	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane