Bhi04G001062 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001062
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	chr4: 33388758 .. 33394871 (-)
RNA-Seq Expression	Bhi04G001062
Synteny	Bhi04G001062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTATATGTTTTGTTTATCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACAACAACCCAAAACAATGTCCTTATTCAAGGTTGGCAAGCCACTGCATGCTCCAAACACCACTTTACCTTTGGTGTTGACTTAAACGTTAAATTATGTTGGCCTAAGTATAATAAATATAGTGTTAAATTTTTGTTCCCACATCAAAATTTTTATTGATATTTTTATATTTTCATGGGTTCAACATCGACATGAAGCGATATTTTCATTATATTGCAGAAAAATTCATAAAATATAATAATCAAGTAACAAAATATCACTAATGTAAATATAATATAAATAATAGACATATTAACTTGTTTAAAAATCATAAAATATTTACTTACTAATTTAAATTTATTTTTTGAATTTGTAGTTTTTACAAATTTTCCAAAAATATTCATTGGTATCAAAATTTTATCGATATTTTGATAGACATTTATGTAAAATTAAGACCTTGCTATTTATGTAGACATCGACATTTTAACCTTGATTACAACCATGTCATACCTTCGATTCATAACTTTGAGTGTGTTTGGTAAATTTTTTAAATGTTCAATTTTAAAAATAAGTTATTTTGAAAAAATTGAAATGTTTCGCAACCATTCAAAATAGATTTCAAAACATTTTTGAAGTATAAATTTAACCGACTTTTATCAAAATAATTTAAATAATTCTTTTTTTTTTAAAAAAAAAAAACCTTTTTTTCTCCCATCTAAAAGACTTCATTTGTCTGATTTAATTTATAATTGATTTGGACTTTAGAACGATTCCAAAACATTAATAATCATTTTGATACATTTAGCTTAAAAAGATTATAGAAAAGTATATGTCTTTTAAACTTTTAATTTGTAAAGTTTAAGAATTAAAAAGATTAAATTTTAATTTTGAAGGGATAGAAATCTAAAACAAAAGGGCTAAAATTGTAATTTAACTCTCTCTATATGTACAAAAAAGAAAATTAAAACAACGGGTATGAAATTACCACCAGATTTGTTTCTGTCAGAGACTGACGCTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCGCCGTCGGCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCATCCACCAAGTTCAGTGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCGTCCAGTTTATTTCTCAGGACGATGCAGTCAAGGCCGCGAAACAGATGAACGGGAAGATTTTGAATGGTCGCGTTCTGAAGGCTGCCATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAAAGGGTTTATAAGGATAAGAGTAGGTGCTACGAATGCGGCGCAGTTGATGGCCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACGTTGTCGAAAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGACGAAGATGATTAACAGAGCTCGTCTCTTTGGGAAGAATTTGCGAAGGTACGTGGTTTTACTATTGTGTCGTTCTTTTCTGTCGTTCTGTTATACTTTAAGCCTCCATTTCTGTTTTATTTTGGTGCATGTTGCTTGGGAGCCATTGTTAGATGAAATTAGCTTACAAACTTCAAAATTTAGGCTGCTGGGTGCGGTAAGTAAGAACGAGCTATAGGTGTGTACTCTAGATTCTGCTTTTTGATAATGTCAGGAGTATTAAGGATTGTGGTACTACTGCCAGCCTAAGGCACATGTCCTCCACCAATAGGCCAGAAATAAATTCAAATTTTCACCTCCATATGTTATGTTGAACTCAATAGGACAGAGGTACTGCTCTTAACAATGTATGCCCATACGATAGCAATAACCGGTCTATACTGGAATCTGGAAATGGTAATAAATACTCAATCTTCCATCTCATGCCACCTTTTTCAAGAGTCAAGGATTTCTGCAGTGATAGTGAGTATAAGTTGCTTATTAATTCCCTCGAGCATGAGCAGTATTTTTGTATTTTTATATATTTTGGAATTCCCACATCATGATCCCGGTGATTAGTGCCATCAATCTTTTAGGGCTTGCTTTCCCTTGTGCCAAGACTTCTCCAAACGTTTCAGACTTGATGAATGGTCCTGGTCCATGCTCCTTCGAACAAGCATTATTATTATTTTCTTCTTTTTGAAGAGAAACAAGAACTGTTCACTGAGATTAGATGAAAAGGAAAGGTGGGGAAACTCTAGAAAAGCCAATGGAAATTATTCTATATATAAAATAAATCTATTTAATGGCCCAATCGACATCAATAATAAGCGGGAAGTCATTGCATAAGCCTTTGAAGTGGATATGCACACACCAATTTGAAATAGAGTAACCAAACTAGATGAGGGAAAAGAAGGAGAGAAAGGAAAGATCTCCATCTTTATCATTAGAACCTTTTCTATTCTGATCAACTGTGGCAGGTTCCAAGATAAATTAAACGTGCTAAATTACTTACCATAGAATCCACAGCAAATGAACAATGGAGGAAGAAGTGATCTGTTTCTCCCTATGAGTTTGACACATAATGCACTAATTCAGCAATTGTGGCATAGACAGTAATATACTTCATGTGTCGTGAGGATTCAGTTTTTTTGCTAAGAAAGAGTGAATATCAAACTTTTGATCTATATAGTTTATTTTTTCCTCTTCCCAACTTACTATGGTAATAGATAGATTGATTAAGAAGAAAATTTGTTGAAAGATGTACCAAGTTGAAAGGAATTTGGAAGACAAATCTCCAAGTTTTTCTAGAGTCCAGACTCTTATTGGGCAGCTTAGAGATTTTTTTTAGGTAAGAAACATTTCATTGAATAAATGTAATAAAAGGGAAGACCCCATAGCACCTAAAGATGATTACAAAAGAGATTTCCAATTGGAAACTAAATAAGAAAGAGATGTTTAAAGGTTGCTTAGATTGCACCAATACAATGCAGTAGATAGAGTCAAATCTAAAAAAAGATCAAAACTGGAAGAACGATCTCTAAAAAGACGTTTATTATGCTCGCCCCATAAAGTCTAGAAGAAAGCTCATATAAAAGCTAACCAAAGGGTCTTCTTAGGACCATGAAATGGATGACCAACCAACAAAGAAGCAAGATTGTCAAACATATTGTGGGAAAAAACCGCTGACCAACCAAAAGCTTGCATCATGATATGCCAAAAATGCAATGTGAAAGGACAATGCACAAAAAGATGAGCTGTAGACTTTGATTGATTATGGCACATATGGCACCAAGATGGAGAGATGGTCATATATGGCATTCTTCGTTGGAGATAATCAATAGTATTAATTGCACCAAGGCTTAGTTCCCATAAGAAAATTTTGATTTTCTTAGGAAAATGATCCGTCCAAATAGCTGAACAAACATCCTTGACTTGAAAATCAATTGTATCTACCATATTATCCATAAGAGATTTAACAGTGAACGTTGAAGAAGGATCAATAGTCCAAATCCAGGTGTCAGGCGAACGATGGAAACTGACAGGACATAATAATTGCGACAAGGCGGCCCATTCAAGAGTTTCTAAATTATTGAGATTACGATGAAGACGCAAGTCCGAAGCCTCGGAGTCCTCAATCCACACATCAGCAACCTTAATATTCGGTAAGTGAGTAAGCCTAAACAAACAAGGAAATACCGTATAAAGAGCTACACAGCTAAGCCAAGGTTCCCTCCAAAATGAAATAGATGTACCAGATACTGGGCAACTTAGAGATGGAAACCCCCCATCTTCCTCATCAGATCTAAAAGAATACTATGGCAATTTAAATCACAATCCAACAACCTAAGTTGAGGCTTCACATTATCTAAGCATCTAAAATCCATCTTTGTGCGGAGATTAATCCATGATGCTTAGAATACGCATATATTTGGTCTATCGACCACCCAACGCTCTTTTCTTTTAAAGAGTGTGATCATTATTTAGTGGCAGCCTTTTGGTGTAAGTGTGGTATAATATAGATCTTTTCAGATGTTTGAAATCCTTTTGGTTCTAAATCATAGGCTTCTCTTGTTGAGGGAAGTGTTTTCTAGGCCTTTCTTCTCTTGTTAGAAAGGAAGGTTTCTGTTAGTCTCATCTCGGTCATTTTTAGGAGCATTGATCGGAGAGAAATAAAATGGATTTTACTGGTCTTAGAGGTCTTGGATGGAGATTGGGAGGTCGCTTATGTTAGTACACCCACATGATTCTTGTTTCTATCAATCCTTCTTTTATTATTTTCGTTTCTCTTTTGTCACCAACAAGCCTCTTGTAATTTTTTTTCCCGTTTTTGATTGATCCTTGTCTGTCTGGTCAGCCCTCTTGTGCATCCAAATGATTGATTTTTTTCCCTTTTTGATTGTGTCACCGACAATCAGGCCTCTTGTGCATCCACATGATTACTTTTTTCTCCCCTGATGAAGTCCCGAAGACTAAGCTTGATGGCTTTGTAATGCAACATTGTATATGAGAGCATAGCTCAGGATGTCTCAAGAATAACGTTCACAAGGTATTCTTAGATTTTGCACCTTTTAAATCTAAATCACACTTATAGTAGATAAGATAGTCTTTAATCCAATTACTGGCCTCCGTCAGTGCTTTTCTGTCCTTGCCTGTAGGAAGAGGTTTGTTCAGTTGAATGATAGGCAGATAATTGATTCCATCTTTATTGGGAATATAGTGTTCGGTGAAAAAGGAATAAGGGTTTCCTAAATTTGATTGGGATGACATAATTATATATGATCCTGTAGATTGAGACTTTTCATTCTTGGAAAGGGTGGGTCTTAGGTAAGATTTAAGAAATAAAAATGATGGATTTACAGTTGGATTCACGTTCAACAAAACTATATTGATAAAAGACCAAGGGAAATTAGTTTAAAGTCCTCTTTCTCTTCCAGCCGTTCATATTGTAGCTAAAGTTGAAGTTGGCTTCTTGAAAAAACCGTGATGTTATGAAAGCTTTATTATTGTATCTTTTAGAATTTCATTTCACATGAGTCCTTTTTTGGAGTGGCAATGACATAATCCATTTTTTCCCTACAACCTGCAGATTGTTCAGAAGATGTCACTTCACATTAAGCTATTAGTATCCAGTGGAGGAAGTCGACTGCGTCACTGGTCCTTTGATCACTTTCTTCAGCTACTAATTTGCTAGGAGAGGACAGAAAACAAAGTTAAGAAATGGAGGAATACTACCGTTCTGGAAGAGGGGAAATGAGCTTGATCACTGGTATTTACTTTAGAACTCAAGGACACATATATACAACTTATATAACAGATCCTGTTTAAGTAAGGTTGTTGATCACTGGTATTTACTGCCTATCTTCATTTATTGTTCCCTTTGAACAAGCTTTGGCTATGGATAAAACATTTTAGTCTCTCTCGAGGTGGAGGTCGAGCCAAAGCAAGATCCAGTCATTTGATCAATTTGAGAAATATTTCTTCAATGACTTGGGGGTATTGGAAATATTGGGAAGAAAAATGTTGCTCTTATTTTGTTGAAATGGCTATTCAAGTTTCCAATGCTAAGCATTGTGTGTGTATGTTATGAAAGAAAGTAGTGTGGGTGTGGATCGTAAATAAGGATAAAGATATCCATCAATATATCTGTAAAATTGAAATCTCAATATCGATATTGATATTGATATTTTAATCCTTGATCGTAAATAACTTTGAGGACAAACTAAAGTATGGTCTTTCATTAATCTGGGGGTGTTTGCTTTATAGGAG

mRNA sequence

ATGTTTTATATGTTTTGTTTATCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACAACAACCCAAAACAATGTCCTTATTCAAGGTTGGCAAGCCACTGCATGCTCCAAACACCACTTTACCTTTGGTGTTGACTTAAACCTTAAAAAGATTATAGAAAAGTATATGGCTAAAATTAAAATTAAAACAACGGGTATGAAATTACCACCAGATTTGTTTCTGTCAGAGACTGACGCTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCGCCGTCGGCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCATCCACCAAGTTCAGTGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCGTCCAGTTTATTTCTCAGGACGATGCAGTCAAGGCCGCGAAACAGATGAACGGGAAGATTTTGAATGGTCGCGTTCTGAAGGCTGCCATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAAAGGGTTTATAAGGATAAGAGTAGGTGCTACGAATGCGGCGCAGTTGATGGCCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACGTTGTCGAAAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGACGAAGATGATTAACAGAGCTCGTCTCTTTGGGAAGAATTTGCGAAGGCCTCTTGTGCATCCACATGATTACTTTTTTCTCCCCTGATGAAGTCCCGAAGACTAAGCTTGATGGCTTTGTAATGCAACATTGTATATGAGAGCATAGCTCAGGATGTCTCAAGAATAACGTTCACAAGATTGTTCAGAAGATGTCACTTCACATTAAGCTATTAGTATCCAGTGGAGGAAGTCGACTGCGTCACTGGTCCTTTGATCACTTTCTTCAGCTACTAATTTGCTAGGAGAGGACAGAAAACAAAGTTAAGAAATGGAGGAATACTACCGTTCTGGAAGAGGGGAAATGAGCTTGATCACTGGTATTTACTTTAGAACTCAAGGACACATATATACAACTTATATAACAGATCCTGTTTAAGTAAGGTTGTTGATCACTGGTATTTACTGCCTATCTTCATTTATTGTTCCCTTTGAACAAGCTTTGGCTATGGATAAAACATTTTAGTCTCTCTCGAGGTGGAGGTCGAGCCAAAGCAAGATCCAGTCATTTGATCAATTTGAGAAATATTTCTTCAATGACTTGGGGGTATTGGAAATATTGGGAAGAAAAATGTTGCTCTTATTTTGTTGAAATGGCTATTCAAGTTTCCAATGCTAAGCATTGTGTGTGTATGTTATGAAAGAAAGTAGTGTGGGTGTGGATCGTAAATAAGGATAAAGATATCCATCAATATATCTGTAAAATTGAAATCTCAATATCGATATTGATATTGATATTTTAATCCTTGATCGTAAATAACTTTGAGGACAAACTAAAGTATGGTCTTTCATTAATCTGGGGGTGTTTGCTTTATAGGAG

Coding sequence (CDS)

ATGTTTTATATGTTTTGTTTATCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACAACAACCCAAAACAATGTCCTTATTCAAGGTTGGCAAGCCACTGCATGCTCCAAACACCACTTTACCTTTGGTGTTGACTTAAACCTTAAAAAGATTATAGAAAAGTATATGGCTAAAATTAAAATTAAAACAACGGGTATGAAATTACCACCAGATTTGTTTCTGTCAGAGACTGACGCTGAAAAAATGGCGCGCAAGGGAAAGAGAACCAATAACCCTAATAGCGACAGCGAGGACGACGAAACCTTCTATTACCGGTATCCCTCCGCCGCCTCTTCTGCCCCGCCGCCGCCGTCGGCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCATCCACCAAGTTCAGTGGTGGTTCCGGAGGTTTGGTTCCTTCGAAGTCTACTGTATATGTTTCCAATTTCGACTATTCACTCACTAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCGTCCAGTTTATTTCTCAGGACGATGCAGTCAAGGCCGCGAAACAGATGAACGGGAAGATTTTGAATGGTCGCGTTCTGAAGGCTGCCATAGCGACTGATAATGGTCGCGCCGCTGAGTTTATAAGGAAAAGGGTTTATAAGGATAAGAGTAGGTGCTACGAATGCGGCGCAGTTGATGGCCATTTGTCTTATGAATGCCCTAAAAATCAATTGGGGCCAAGGGAGCGGCCAGAACCGAAGCGGGGGAGAAGGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGACGGAGATGCAGACCAGAGACTCCTGACTGGCGGTGAGAACGTTGTCGAAAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGACGAAGATGATTAA

Protein sequence

MFYMFCLSKQKKKKKKKKKTTTTQNNVLIQGWQATACSKHHFTFGVDLNLKKIIEKYMAKIKIKTTGMKLPPDLFLSETDAEKMARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKASYFSDESDEDD

Homology

[Close]

BLAST of Bhi04G001062 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-73
Identity = 161/267 (60.30%), Postives = 192/267 (71.91%), Query Frame = 0


Query: 89  KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSGGLVPS 148
           K+    +SD E+D+TFYYRY S A+   PPPS  +   SS + S +     GGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSSSAKSSAP---GGGSGGLAPS 61

Query: 149 KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 208
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 209 KQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 268
           + M+ KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 269 RERPEP--KRGRR-GGVGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGG 328
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 329 ENVVE----KKKAKKASYFSDESDEDD 343
               E    K+K KK SYFSDESD++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of Bhi04G001062 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 143 GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 202
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 203 DAVKAAKQMNGKILNGRVLKAAIATDNGRA 233
            A  A K+M+GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Bhi04G001062 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 143 GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQD 202
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 203 DAVKAAKQMNGKILNGRVLKAAIATDNGRA 233
            A  A K+M+GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Bhi04G001062 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-10
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 147 PSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVK 206
           P  S + V N  +S +   L   FS FG+IA V ++KD   ++S+G AF+QF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 207 AAKQMNGKILNGRVLKAAIATDNGR 232
           A + M+ ++ NGR++   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of Bhi04G001062 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-10
Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 151 TVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQ 210
           ++ V N  +  T  DL+ LF+ +GK+  V + +DR+T  SRG AFV++  +D+A KA ++
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 211 MNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRE 270
           ++G++++GR +    A     A +  + RV +   +     +     S   P+    P  
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRS-RSPRRSRSPPR 136

Query: 271 RPEPKRGR 279
           R  P+R R
Sbjct: 137 RRSPRRSR 143

[Close]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.3e-72
Identity = 161/267 (60.30%), Postives = 192/267 (71.91%), Query Frame = 0


Query: 89  KRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSGGLVPS 148
           K+    +SD E+D+TFYYRY S A+   PPPS  +   SS + S +     GGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSVAA---PPPSNPKHQPSSSAKSSAP---GGGSGGLAPS 61

Query: 149 KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAA 208
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAFV ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 209 KQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 268
           + M+ KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 269 RERPEP--KRGRR-GGVGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGG 328
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 329 ENVVE----KKKAKKASYFSDESDEDD 343
               E    K+K KK SYFSDESD++D
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.4e-43
Identity = 103/217 (47.47%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 142 SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 201
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 202 DDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 261
           D A+   + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 262 PKNQLGPRERPEPK-RGRRGGVGARHEEDWGSDVGEGFEDD------------NWASVVD 321
           PKN LG RE P+ K + ++  V    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 322 GDADQRLLTGGENVVE---KKKAKKASYFSDESDEDD 343
                R  TGG +  +   + + KK++YFSDE +  D
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-42
Identity = 101/217 (46.54%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 142 SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 201
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 202 DDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 261
           D A+   + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 262 PKNQLGPRERPEPK-RGRRGGVGARHEEDWGSDVGEGFEDD------------NWASVVD 321
           PKN LG RE P+ K + ++  +    EE    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 322 GDADQRLLTGGENVVE---KKKAKKASYFSDESDEDD 343
             +  R   GG +  +   + + KK++YFSDE +  D
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-41
Identity = 104/218 (47.71%), Postives = 133/218 (61.01%), Query Frame = 0


Query: 142 SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 201
           SGGL PSKSTVYVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 202 DDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 261
           + A   ++ +N K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 262 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 321
           PKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 322 VVEKKKA-----------------KKASYFSDESDEDD 343
              K+ A                 KK++YFSDE +  D
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEELSD 218

[Close]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-41
Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 0


Query: 142 SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQ 201
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 202 DDAVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 261
           D A    + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 262 PKNQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 321
           PKN LG RE P+ K  ++       EE+   +  E  ED+     +D  +        + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE--IEEVEESEDEGEDPALDSLSQAIAFQQAKI 181

Query: 322 VVEKKK------------------AKKASYFSDESDEDD 343
             E+KK                   KK++YFSDE +  D
Sbjct: 182 EEEQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 1.0e-132
Identity = 247/259 (95.37%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 84  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 143
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 144 GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 203
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 204 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 263
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 264 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 323
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 324 EKKKAKKASYFSDESDEDD 343
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 1.0e-132
Identity = 247/259 (95.37%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 84  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 143
           MARKGK+TNNP SDS++DETFYYRYPSAASSAPP PS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 144 GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 203
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 204 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 263
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 264 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 323
           NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 324 EKKKAKKASYFSDESDEDD 343
           EKKKAKKASYFSDES EDD
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 84  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 143
           M+RKGKR  NPNSDS+DDETFYYRYPSA SSAPPPPS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 144 GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 203
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 204 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 263
           AVK  KQM+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 264 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 323
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 324 EKKKAKKASYFSDESDEDD 343
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 3.2e-126
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 84  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 143
           M+RK KR  NPNSDS+DDETFYYRYPSA SSAPPPPS+SQSHFSSQSHSHSSTK  GGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 144 GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 203
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 204 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 263
           AVK  KQM+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 264 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 323
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 324 EKKKAKKASYFSDESDEDD 343
           EKKKAKKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 6.6e-124
Identity = 235/259 (90.73%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 84  MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 143
           MARKGKRT NPNSDS+DDETFYYRYPSAASSAPPP S+     SSQ+HSHSS K  GGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60

Query: 144 GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 203
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 204 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 263
           AVKA K+MNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 264 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 323
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLTGGENV 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240

Query: 324 EKKKAKKASYFSDESDEDD 343
           E+KK KKASYFSDESDED+
Sbjct: 241 ERKKGKKASYFSDESDEDE 254

The following BLAST results are available for this feature:

BLAST of Bhi04G001062 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	2.3e-73	60.30	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	2.6e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.6e-11	37.78	glycine-rich RNA-binding protein 4	[more]
AT4G20030.1	3.7e-10	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	4.8e-10	28.91	ortholog of human splicing factor SC35	[more]

BLAST of Bhi04G001062 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	3.3e-72	60.30	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q499V6	9.4e-43	47.47	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q9CZ96	6.1e-42	46.54	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]
Q5SP50	1.0e-41	47.71	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]
Q8TBF4	1.4e-41	46.12	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]

BLAST of Bhi04G001062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYZ1	1.0e-132	95.37	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	1.0e-132	95.37	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	1.8e-126	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	3.2e-126	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1BY38	6.6e-124	90.73	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 151..224 e-value: 8.8E-6 score: 35.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 151..224 e-value: 3.8E-25 score: 99.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 152..222 e-value: 6.3E-22 score: 77.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 150..228 score: 19.246052
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..234 e-value: 1.7E-27 score: 98.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..143
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 95..342
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 95..342
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 149..226 e-value: 8.19435E-40 score: 133.21
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 147..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001062	Bhi04M001062	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding