Bhi04G001054 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G001054
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr4: 33258378 .. 33259011 (-)
RNA-Seq Expression	Bhi04G001054
Synteny	Bhi04G001054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCAAAGGTGAAAGGAACTTTACAAAAAATGTGTGATGAATACTTCTTCAATATGACAAGAGATGAACTGAATACTGTCATTAGTTCACCTGTTGGATCTGTTCGTGCATCAATGGTTGAGAAATTTAAGAAATTTCTTGACAAAGAAGCATCAAATGATAGTAAGATGGCGGTAGATAATTATTTGGACGAATGCTGCCATCGAAGAGATGGCAAGGATCTGGATGTTTTCAAGTGGTGGCAGTTGAACTCTTCTCGATTCTTAATCCTCAGTGAAATAGCCAAGGACATCTTTGCCATTCCTCTCACCACATCTGCATTTCAGTCTACTTTTAATGCTGAAGCTCGTGTACTGGATCGTTTTCGGTCCTTGTTTCCTCTTAAGATATTAGAAGCCCTCATTTGTGTTCAAAGTTGGCTACAACCTAAACCTCTCGTGGCTGATGTAGGTGATGTAATAGAAGATATTGATAAATTAGATCAAGGTAACATATTGATATCTTTTTTCTATTACATTACTAAATATATTTAAAGTAATTATTTCTTTTTTTTTTTTTATCTCCTTTTCAGAATTTTCTAAAATTGGAGGTGAACTTGGACTCCATTGCGGATCAAACTTTTCAAGGTAA

mRNA sequence

ATGACTGCAAAGGTGAAAGGAACTTTACAAAAAATGTGTGATGAATACTTCTTCAATATGACAAGAGATGAACTGAATACTGTCATTAGTTCACCTGTTGGATCTGTTCGTGCATCAATGGTTGAGAAATTTAAGAAATTTCTTGACAAAGAAGCATCAAATGATAGTAAGATGGCGGTAGATAATTATTTGGACGAATGCTGCCATCGAAGAGATGGCAAGGATCTGGATGTTTTCAAGTGGTGGCAGTTGAACTCTTCTCGATTCTTAATCCTCAGTGAAATAGCCAAGGACATCTTTGCCATTCCTCTCACCACATCTGCATTTCAGTCTACTTTTAATGCTGAAGCTCGTGTACTGGATCGTTTTCGGTCCTTGTTTCCTCTTAAGATATTAGAAGCCCTCATTTGTGTTCAAAGTTGGCTACAACCTAAACCTCTCGTGGCTGATGTAGGTGATGTAATAGAAGATATTGATAAATTAGATCAAGAATTTTCTAAAATTGGAGGTGAACTTGGACTCCATTGCGGATCAAACTTTTCAAGGTAA

Coding sequence (CDS)

ATGACTGCAAAGGTGAAAGGAACTTTACAAAAAATGTGTGATGAATACTTCTTCAATATGACAAGAGATGAACTGAATACTGTCATTAGTTCACCTGTTGGATCTGTTCGTGCATCAATGGTTGAGAAATTTAAGAAATTTCTTGACAAAGAAGCATCAAATGATAGTAAGATGGCGGTAGATAATTATTTGGACGAATGCTGCCATCGAAGAGATGGCAAGGATCTGGATGTTTTCAAGTGGTGGCAGTTGAACTCTTCTCGATTCTTAATCCTCAGTGAAATAGCCAAGGACATCTTTGCCATTCCTCTCACCACATCTGCATTTCAGTCTACTTTTAATGCTGAAGCTCGTGTACTGGATCGTTTTCGGTCCTTGTTTCCTCTTAAGATATTAGAAGCCCTCATTTGTGTTCAAAGTTGGCTACAACCTAAACCTCTCGTGGCTGATGTAGGTGATGTAATAGAAGATATTGATAAATTAGATCAAGAATTTTCTAAAATTGGAGGTGAACTTGGACTCCATTGCGGATCAAACTTTTCAAGGTAA

Protein sequence

MTAKVKGTLQKMCDEYFFNMTRDELNTVISSPVGSVRASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWLQPKPLVADVGDVIEDIDKLDQEFSKIGGELGLHCGSNFSR

Homology

[Close]

BLAST of Bhi04G001054 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 34/106 (32.08%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 37  RASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIA 96
           +A  +  F  ++ +    + K  +D YLDE    R  ++ DV  WW+ N  ++  LS++A
Sbjct: 570 KADGLSDFDTYIMETTGQNLKSELDQYLDETLLPR-VQEFDVLDWWKQNKLKYPTLSKMA 629

Query: 97  KDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWL 143
           +DI +IP++ +AF   F+ E R +D +++    + +EALIC + WL
Sbjct: 630 RDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of Bhi04G001054 vs. TAIR 10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 21/67 (31.34%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 77  DVFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALI 136
           DV  WW++NS R+  LS +A+D  A+  T++A +  F  +   +D+ +   P    +++I
Sbjct: 584 DVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVI 643

Query: 137 CVQSWLQ 144
           C++SW++
Sbjct: 644 CIRSWIE 650

[Close]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 34/106 (32.08%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 37  RASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIA 96
           +A  +  F  ++ +    + K  +D YLDE    R  ++ DV  WW+ N  ++  LS++A
Sbjct: 570 KADGLSDFDTYIMETTGQNLKSELDQYLDETLLPR-VQEFDVLDWWKQNKLKYPTLSKMA 629

Query: 97  KDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWL 143
           +DI +IP++ +AF   F+ E R +D +++    + +EALIC + WL
Sbjct: 630 RDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 44  FKKFLDKEA-SNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDIFAI 103
           F  +L + A S  +K  ++ YLDE    R  ++ D+  WW+LN+ +F  LS +A+DI AI
Sbjct: 601 FDMYLSEIATSQPTKSELEQYLDESLTPRI-QEFDILNWWKLNTLKFPTLSRMARDILAI 660

Query: 104 PLT-TSAFQSTFNA--EARVLDRFRSLFPLKILEALICVQSWLQPKP 147
           P++  S+  S F+A    R+LD +RS    +I+EAL+C + WLQ  P
Sbjct: 661 PMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLP 706

[Close]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 44  FKKFLDKEA-SNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDIFAI 103
           F  +L + A S  +K  ++ YLDE    R  ++ D+  WW+LN+ ++  LS++A+DI AI
Sbjct: 601 FDMYLSEIATSQPTKSELEQYLDESLTPRI-QEFDILNWWKLNTLKYPTLSKMARDILAI 660

Query: 104 PLT-TSAFQSTFNA--EARVLDRFRSLFPLKILEALICVQSWLQPKP 147
           P++  S+  S F+A    R+LD +RS    +I+EAL+C + WLQ  P
Sbjct: 661 PMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWLQYLP 706

[Close]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 33/103 (32.04%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 42  EKFKKFLD--KEASNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDI 101
           ++F+ +L   K+        +D Y+ E   +  G+  D+  WW+   + + IL++IA+D+
Sbjct: 650 DEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQ-FDILSWWRGRVAEYPILTQIARDV 709

Query: 102 FAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWL 143
            AI ++T A +S F+A  RV+D +R+    +I+EALIC + W+
Sbjct: 710 LAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751

[Close]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 33/103 (32.04%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 42  EKFKKFLD--KEASNDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDI 101
           ++F+ +L   K+        +D Y+ E   +  G+  D+  WW+   + + IL++IA+D+
Sbjct: 619 DEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQ-FDILSWWRGRVAEYPILTQIARDV 678

Query: 102 FAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWL 143
            AI ++T A +S F+A  RV+D +R+    +I+EALIC + W+
Sbjct: 679 LAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720

[Close]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL
Match: A0A5D3B9J0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00270 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 61/158 (38.61%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 15  EYFFNMTRDELNTVISSPVGSVRASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGK 74
           E F   ++ E+ ++ SS      A++ ++FK+  +K   +D+K  V  YLDE   R + +
Sbjct: 2   EGFDFQSQSEIPSISSSGSYKAHAAVHDRFKQ-NNKTCLDDAKTEVARYLDEA--RIEDE 61

Query: 75  DLDVFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEA 134
            LD+  WW++NSSRF I+S++A+DI++ P++T  F+S FN   RVLD F++    +  EA
Sbjct: 62  YLDLLNWWKVNSSRFKIISQVARDIYSNPISTVPFESAFNTGGRVLDSFQNSLTPQTAEA 121

Query: 135 LICVQSWLQPKPLVADVGDVIEDIDKLDQEFSKIGGEL 173
           LIC Q+W+Q KPL  D+ + I+  +++D+EF  IG E+
Sbjct: 122 LICAQNWIQSKPL-DDMTEEIDGAEEIDEEFINIGKEM 155

[Close]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL
Match: A0A6J1DYU8 (uncharacterized protein LOC111025523 OS=Momordica charantia OX=3673 GN=LOC111025523 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 22  RDELNTVISSPVGSVR----ASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGKDLD 81
           + E+ ++ SS  G +      ++V    K   K+ S+D K  V  YLDE C   D  D D
Sbjct: 23  QSEIPSISSSAFGEIGIYKVRAVVHDIYKQSKKKDSDDGKTEVTRYLDEACAEDD--DFD 82

Query: 82  VFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALIC 141
           +  WW++NSSR+ I+S++A+DI+ IP++T   +S F+   RVLD FRS    +  +ALIC
Sbjct: 83  LLNWWKINSSRYKIISQVARDIYNIPISTVPSESAFSTGGRVLDSFRSSLTPQTTDALIC 142

Query: 142 VQSWLQPKPLVADVGDVIEDIDKLDQEFSKIGGEL 173
            Q+WLQ KPL  D+ + I+  +++D+E+S I  E+
Sbjct: 143 AQNWLQSKPL-DDMSEEIDGAEEIDEEYSSIRKEM 174

[Close]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL
Match: A0A5A7VA60 (Putative aspartyl aminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00370 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 62/159 (38.99%), Postives = 101/159 (63.52%), Query Frame = 0


Query: 15  EYFFNMTRDELNTVISSPVGSVRASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGK 74
           E F   ++ E+ ++ SS     RA++ ++FK+  +K   +D+K  V  YLDE      G 
Sbjct: 16  EGFGFQSQSEIPSISSSGSYKARATVHDRFKQ-SNKTCLDDAKTEVTRYLDEARIDCMGD 75

Query: 75  D-LDVFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILE 134
           + LD+  WW++N+SRF I+S++A+DI++IP++T   +S F+   RVLD FRS    +  E
Sbjct: 76  EYLDLLTWWKVNASRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQTAE 135

Query: 135 ALICVQSWLQPKPLVADVGDVIEDIDKLDQEFSKIGGEL 173
           ALIC Q+W+Q KPL  D+ + I+  +++D+EF  IG E+
Sbjct: 136 ALICAQNWIQSKPL-DDMNEEIDGAEEIDEEFINIGKEM 172

[Close]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL
Match: A0A6A2Y539 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111633pilonHSYRG00080 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 56/175 (32.00%), Postives = 104/175 (59.43%), Query Frame = 0


Query: 1   MTAKVKGTLQKMCDEYFFNMTRDELNTVISSP-------VGSVRASMVEKFKKFLDKEAS 60
           M+ +VK  L +M ++Y F   ++++ T + S        + SV   +  +F+K +D    
Sbjct: 177 MSQEVKEELYEMFEKYSFFANQEQIETCVQSSNENRTINIDSVNDELAVEFEKNMDLR-E 236

Query: 61  NDSKMAVDNYLDECCHRRDGKDLDVFKWWQLNSSRFLILSEIAKDIFAIPLTTSAFQSTF 120
           N +K  +D YL +   ++   + D+  WW++NS+++ IL ++A+D+ AIP+ T A +S F
Sbjct: 237 NLNKNEIDLYLIKALEKKRNPNFDILNWWKVNSTKYHILGQLARDVLAIPMFTVASESAF 296

Query: 121 NAEARVLDRFRSLFPLKILEALICVQSWLQPKPLVADVGDVIEDIDKLDQEFSKI 169
           +   RVL+ +RS    K +EALIC Q+W +  P+  DV +++ED++KL+ + + I
Sbjct: 297 STRGRVLNCYRSSLTPKTVEALICTQNWCRSSPISTDVEELMEDLEKLELDLAPI 350

[Close]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL
Match: A0A5D3E590 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001030 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 62/149 (41.61%), Postives = 97/149 (65.10%), Query Frame = 0


Query: 27  TVISSPVGS--VRASMVEKFKKFLDKEASNDSKMAVDNYLDECCHRRDGKD-LDVFKWWQ 86
           +V+  P GS   RA++ ++FK+  +K   +D+K  V  YLDE      G + LD+  WW+
Sbjct: 416 SVVLDPSGSYKARATVHDRFKQ-SNKTCLDDAKTEVTRYLDEARIDCMGDEYLDLLTWWK 475

Query: 87  LNSSRFLILSEIAKDIFAIPLTTSAFQSTFNAEARVLDRFRSLFPLKILEALICVQSWLQ 146
           +NSSRF I+S++A+DI++IP++T   +S F+   RVLD FRS    +  EALIC Q+W+Q
Sbjct: 476 VNSSRFKIISQVARDIYSIPISTVPSESAFSTGGRVLDSFRSSLTPQTAEALICAQNWIQ 535

Query: 147 PKPLVADVGDVIEDIDKLDQEFSKIGGEL 173
            KPL  D+ + I+  +++D+EF  IG E+
Sbjct: 536 SKPL-DDMTEEIDGAEEIDEEFINIGKEM 562

The following BLAST results are available for this feature:

BLAST of Bhi04G001054 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	1.6e-12	32.08	BED zinc finger ;hAT family dimerisation domain	[more]
AT1G18560.1	2.0e-07	31.34	BED zinc finger ;hAT family dimerisation domain	[more]

BLAST of Bhi04G001054 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2N5	2.3e-11	32.08	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
Q6AVI0	3.9e-11	39.25	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
B9FJG3	1.1e-10	38.32	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
P08770	4.3e-10	32.04	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	4.3e-10	32.04	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]

BLAST of Bhi04G001054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9J0	1.1e-21	38.61	Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum...	[more]
A0A6J1DYU8	1.1e-21	38.71	uncharacterized protein LOC111025523 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7VA60	1.5e-21	38.99	Putative aspartyl aminopeptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6A2Y539	1.9e-21	32.00	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111633pilon...	[more]
A0A5D3E590	3.3e-21	41.61	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 60..142 e-value: 1.7E-20 score: 72.6
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 43..145
None	No IPR available	PANTHER	PTHR23272:SF15	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1	coord: 43..145
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 49..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001054	Bhi04M001054	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046983	protein dimerization activity