Bhi04G000870 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000870
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	SAGA-Tad1 domain-containing protein
Location	chr4: 26813215 .. 26813631 (+)
RNA-Seq Expression	Bhi04G000870
Synteny	Bhi04G000870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAATTGCTGCATTTCAGGGCCTAGGCAGTGCTTCTGCAGATTGTGATTATATTTTGAATAAGGTGTCGGATGTATATTTGAAGCAGCTAATTAGGTATTGTGTTGACTTTGTAGGAGCATGGCCTGCACTTGAGCCTGAGAAAATTATTGCCCGTAAGCAGCAGATTCAGGGGAAGGTTATCAATGGCATGTTGCCGAATAATCAATTACATGGACGACGTAGCAACGGAAATGGAGAAGTTGAACACAAGCACAGATTACAGTGCTCGATATCTTTGCTCGACTTCAAGGTAGCAATGGAGCTTAATCCAACACAACTAGGGGAATACTGGAACTGGAGAAAGTTTGTATGCATCCGTTTGAGGAATGAAACGACTCTGATATTTCTGTTTATCCCATTCCACAGATAG

mRNA sequence

ATGGAACAAATTGCTGCATTTCAGGGCCTAGGCAGTGCTTCTGCAGATTGTGATTATATTTTGAATAAGGTGTCGGATGTATATTTGAAGCAGCTAATTAGGTATTGTGTTGACTTTGTAGGAGCATGGCCTGCACTTGAGCCTGAGAAAATTATTGCCCGTAAGCAGCAGATTCAGGGGAAGGTTATCAATGGCATGTTGCCGAATAATCAATTACATGGACGACGTAGCAACGGAAATGGAGAAGTTGAACACAAGCACAGATTACAGTGCTCGATATCTTTGCTCGACTTCAAGGTAGCAATGGAGCTTAATCCAACACAACTAGGGGAATACTGGAACTGGAGAAAGTTTGTATGCATCCGTTTGAGGAATGAAACGACTCTGATATTTCTGTTTATCCCATTCCACAGATAG

Coding sequence (CDS)

ATGGAACAAATTGCTGCATTTCAGGGCCTAGGCAGTGCTTCTGCAGATTGTGATTATATTTTGAATAAGGTGTCGGATGTATATTTGAAGCAGCTAATTAGGTATTGTGTTGACTTTGTAGGAGCATGGCCTGCACTTGAGCCTGAGAAAATTATTGCCCGTAAGCAGCAGATTCAGGGGAAGGTTATCAATGGCATGTTGCCGAATAATCAATTACATGGACGACGTAGCAACGGAAATGGAGAAGTTGAACACAAGCACAGATTACAGTGCTCGATATCTTTGCTCGACTTCAAGGTAGCAATGGAGCTTAATCCAACACAACTAGGGGAATACTGGAACTGGAGAAAGTTTGTATGCATCCGTTTGAGGAATGAAACGACTCTGATATTTCTGTTTATCCCATTCCACAGATAG

Protein sequence

MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPALEPEKIIARKQQIQGKVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYWNWRKFVCIRLRNETTLIFLFIPFHR

Homology

[Close]

BLAST of Bhi04G000870 vs. TAIR 10
Match: AT4G31440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24530.1); Has 210 Blast hits to 209 proteins in 55 species: Archae - 0; Bacteria - 72; Metazoa - 2; Fungi - 6; Plants - 128; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-22
Identity = 55/114 (48.25%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPAL-EPEKIIARKQQIQ 60
           ME IA  QGLG  SA+C  +LN + D+YLK+L++ CVD  GA      P K    KQQ +
Sbjct: 251 MENIAVTQGLGGVSAECSIVLNNMLDLYLKKLMKSCVDLAGARSMNGTPGKHSLEKQQSR 310

Query: 61  GKVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
            +++NG+  NN  H + SN   ++    R Q S+SLLDF+VAMELNP QLGE W
Sbjct: 311 DELVNGVRTNNSFHIQTSNQPSDIT---REQHSVSLLDFRVAMELNPHQLGEDW 361

[Close]

BLAST of Bhi04G000870 vs. TAIR 10
Match: AT2G24530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPAL-EPEKIIARKQQIQ 60
           ME IA  QGL   S +C   LN + DVYLK+LI  C D VGA     +P K    KQQ Q
Sbjct: 278 MENIAVAQGLEGVSMECAKTLNNMLDVYLKKLINSCFDLVGARSTNGDPGKQRIGKQQSQ 337

Query: 61  GKVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
            K++NG+ P N L  +  NG+ ++   H    S+S+LDF+ AMELNP QLGE W
Sbjct: 338 NKIVNGVWPTNSLKIQTPNGSSDIRQDHH---SVSMLDFRTAMELNPRQLGEDW 388

[Close]

BLAST of Bhi04G000870 vs. ExPASy TrEMBL
Match: A0A5A7VF96 (SAGA-Tad1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003200 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPALEPEKIIARKQQIQG 60
           MEQIAA QGLGS SADC  ILNKV DVYLKQLIR CVD VGAWPA EPEK +A KQQIQG
Sbjct: 281 MEQIAAVQGLGSVSADCANILNKVLDVYLKQLIRSCVDLVGAWPAYEPEKPLAHKQQIQG 340

Query: 61  KVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
           KVINGMLPNNQLHGR SNGN EV H+HRLQCSISLLDFKVAMELNPTQLGE W
Sbjct: 341 KVINGMLPNNQLHGRHSNGNEEVVHEHRLQCSISLLDFKVAMELNPTQLGEDW 393

[Close]

BLAST of Bhi04G000870 vs. ExPASy TrEMBL
Match: A0A1S3BCQ5 (uncharacterized protein LOC103488231 OS=Cucumis melo OX=3656 GN=LOC103488231 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47
Identity = 97/113 (85.84%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPALEPEKIIARKQQIQG 60
           MEQIAA QGLGS SADC  ILNKV DVYLKQLIR CVD VGAWPA EPEK +A KQQIQG
Sbjct: 281 MEQIAAVQGLGSVSADCANILNKVLDVYLKQLIRSCVDLVGAWPAYEPEKPLAHKQQIQG 340

Query: 61  KVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
           KVINGMLPNNQLHGR SNGN EV H+HRLQCSISLLDFKVAMELNPTQLGE W
Sbjct: 341 KVINGMLPNNQLHGRHSNGNEEVVHEHRLQCSISLLDFKVAMELNPTQLGEDW 393

[Close]

BLAST of Bhi04G000870 vs. ExPASy TrEMBL
Match: A0A0A0LM32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378510 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.4e-46
Identity = 94/113 (83.19%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPALEPEKIIARKQQIQG 60
           MEQIAA QGLGS SADC  ILNKV DVYLKQLIR CVD VGAWPA EPEK ++ KQQ QG
Sbjct: 281 MEQIAAVQGLGSVSADCANILNKVLDVYLKQLIRSCVDLVGAWPAYEPEKPLSHKQQFQG 340

Query: 61  KVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
           KVINGMLPNNQLHGR SNG+ EV H+HRLQCSISLLDFKVAMELNPTQLGE W
Sbjct: 341 KVINGMLPNNQLHGRHSNGSEEVVHEHRLQCSISLLDFKVAMELNPTQLGEDW 393

[Close]

BLAST of Bhi04G000870 vs. ExPASy TrEMBL
Match: A0A6J1HF85 (uncharacterized protein LOC111463000 OS=Cucurbita moschata OX=3662 GN=LOC111463000 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 92/113 (81.42%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVGAWPALEPEKIIARKQQIQG 60
           MEQIAA QGLGS SADC  ILNKV DVYLKQLIR CVD VGAWPA EPEK +A  QQIQG
Sbjct: 286 MEQIAAVQGLGSVSADCANILNKVLDVYLKQLIRSCVDLVGAWPAFEPEKPLAHNQQIQG 345

Query: 61  KVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYW 114
           KVINGMLPNNQLH   SNGNGEV H+ RL CSISLLDFKVAMELNP QLGE W
Sbjct: 346 KVINGMLPNNQLHRLHSNGNGEVVHERRLHCSISLLDFKVAMELNPKQLGEDW 398

[Close]

BLAST of Bhi04G000870 vs. ExPASy TrEMBL
Match: A0A6J1GHW6 (uncharacterized protein LOC111454310 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454310 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MEQIAAFQGLGSASADCDYILNKVSDVYLKQLIRYCVDFVG-AWPALEPEKIIARKQQIQ 60
           MEQIAA QGLGS S DC  ILNKV DVYLKQLIR CVD VG +WPA EPEK +A KQQIQ
Sbjct: 221 MEQIAAGQGLGSVSGDCASILNKVLDVYLKQLIRSCVDLVGSSWPAYEPEKPLAYKQQIQ 280

Query: 61  GKVINGMLPNNQLHGRRSNGNGEVEHKHRLQCSISLLDFKVAMELNPTQLGEYWN-WRKF 120
           G+VING+LPNNQLHGR SN NGE  +KHRLQCSISLLDFK+AMELNP QLGE W    + 
Sbjct: 281 GRVINGLLPNNQLHGRHSNVNGEATYKHRLQCSISLLDFKLAMELNPKQLGEDWPLLMEK 340

Query: 121 VCIRLRNE 127
           +C+R   E
Sbjct: 341 ICLRASEE 348

The following BLAST results are available for this feature:

BLAST of Bhi04G000870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31440.1	3.8e-22	48.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24530.1	1.4e-21	47.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

BLAST of Bhi04G000870 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi04G000870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF96	3.4e-47	85.84	SAGA-Tad1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BCQ5	3.4e-47	85.84	uncharacterized protein LOC103488231 OS=Cucumis melo OX=3656 GN=LOC103488231 PE=...	[more]
A0A0A0LM32	8.4e-46	83.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378510 PE=4 SV=1	[more]
A0A6J1HF85	1.0e-43	81.42	uncharacterized protein LOC111463000 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A6J1GHW6	1.5e-42	72.66	uncharacterized protein LOC111454310 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21277:SF38	TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT	coord: 1..114
IPR024738	Transcriptional coactivator Hfi1/Transcriptional adapter 1	PANTHER	PTHR21277	TRANSCRIPTIONAL ADAPTER 1	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000870	Bhi04M000870	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0070461	SAGA-type complex
molecular_function	GO:0003713	transcription coactivator activity