Bhi04G000863 (gene) Wax gourd (B227) v1

Overview
NameBhi04G000863
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 26532068 .. 26532639 (-)
RNA-Seq ExpressionBhi04G000863
SyntenyBhi04G000863
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTAGTAGCTCTAGGAAGGTTAATTCTGATTCTTTAGAAAAACTTGATTTTAAAGCTTATACTCTTGTCGCTCCTTTTCCAAGTGGACTCTTCAATCATGAGAAGAAAGAAGAAAAAGATAAACAAACTAAGAGCCCTAGAAAGAAGATTGCTAACTCTTCTGAAATGAGCTCAAAGCAGTGGGTCAAGAAAGAGGAAGAAATGATTATTGCCCATGCAACAGCAGTAATGCTAAGTAAGCTACCTTCAAAACTAGACGATCCAGGTATGTTTTGCTTACCTTGCACTGTAAGTAAGCAGAAGTTGCAAAATGCTCTAGTAGATCTAGGAGTAGCTATGAGTATTATGCCTGCGTCTTTGTTTTATGAACTTGGGTTGCTAGATCTTAAAAGCATGAATGTTATAATCCAATTGGCAAACCGTAGTTTGAGTAAGCCAATGGGAGTAGTACATGATGTCTTAGTAAATGTAGATGGCCCAATCTCCCCAACCGATTTTTATGTTCTTAAGTACGACGAAAACACTTATTCTCCTTGGAACTCTATCATTTTAGGTAGACCTTTCTTATGA

mRNA sequence

CATCTAGTAGCTCTAGGAAGGTTAATTCTGATTCTTTAGAAAAACTTGATTTTAAAGCTTATACTCTTGTCGCTCCTTTTCCAAGTGGACTCTTCAATCATGAGAAGAAAGAAGAAAAAGATAAACAAACTAAGAGCCCTAGAAAGAAGATTGCTAACTCTTCTGAAATGAGCTCAAAGCAGTGGGTCAAGAAAGAGGAAGAAATGATTATTGCCCATGCAACAGCAGTAATGCTAAGTAAGCTACCTTCAAAACTAGACGATCCAGGTATGTTTTGCTTACCTTGCACTGTAAGTAAGCAGAAGTTGCAAAATGCTCTAGTAGATCTAGGAGTAGCTATGAGTATTATGCCTGCGTCTTTGTTTTATGAACTTGGGTTGCTAGATCTTAAAAGCATGAATGTTATAATCCAATTGGCAAACCGTAGTTTGAGTAAGCCAATGGGAGTAGTACATGATGTCTTAGTAAATGTAGATGGCCCAATCTCCCCAACCGATTTTTATGTTCTTAAGTACGACGAAAACACTTATTCTCCTTGGAACTCTATCATTTTAGGTAGACCTTTCTTATGA

Coding sequence (CDS)

CATCTAGTAGCTCTAGGAAGGTTAATTCTGATTCTTTAGAAAAACTTGATTTTAAAGCTTATACTCTTGTCGCTCCTTTTCCAAGTGGACTCTTCAATCATGAGAAGAAAGAAGAAAAAGATAAACAAACTAAGAGCCCTAGAAAGAAGATTGCTAACTCTTCTGAAATGAGCTCAAAGCAGTGGGTCAAGAAAGAGGAAGAAATGATTATTGCCCATGCAACAGCAGTAATGCTAAGTAAGCTACCTTCAAAACTAGACGATCCAGGTATGTTTTGCTTACCTTGCACTGTAAGTAAGCAGAAGTTGCAAAATGCTCTAGTAGATCTAGGAGTAGCTATGAGTATTATGCCTGCGTCTTTGTTTTATGAACTTGGGTTGCTAGATCTTAAAAGCATGAATGTTATAATCCAATTGGCAAACCGTAGTTTGAGTAAGCCAATGGGAGTAGTACATGATGTCTTAGTAAATGTAGATGGCCCAATCTCCCCAACCGATTTTTATGTTCTTAAGTACGACGAAAACACTTATTCTCCTTGGAACTCTATCATTTTAGGTAGACCTTTCTTATGA

Protein sequence

SSSSRKVNSDSLEKLDFKAYTLVAPFPSGLFNHEKKEEKDKQTKSPRKKIANSSEMSSKQWVKKEEEMIIAHATAVMLSKLPSKLDDPGMFCLPCTVSKQKLQNALVDLGVAMSIMPASLFYELGLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDFYVLKYDENTYSPWNSIILGRPFL
Homology
BLAST of Bhi04G000863 vs. ExPASy TrEMBL
Match: A0A6P6U9P9 (uncharacterized protein LOC113708414 OS=Coffea arabica OX=13443 GN=LOC113708414 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.5e-24
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 0

Query: 65  EEEMIIAHATAVMLSKLPSKLDDPGMFCLPCTVSKQKLQNALVDLGVAMSIMPASLFYEL 124
           E  M+  + +AV+  KLP K  DPGMF +PC +    ++NA++DLG ++++MP S++  L
Sbjct: 626 ERVMVGENVSAVLQRKLPPKCGDPGMFAIPCKIGHSSIKNAMIDLGASINVMPKSIYDSL 685

Query: 125 GLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDFYVLKYDENTYSPWNSIIL 184
            L  LK   +IIQLA+R+ + P G+V DVLV VDG I P DFYVL  D+ +    + IIL
Sbjct: 686 NLGPLKETGIIIQLADRTCTYPDGIVEDVLVQVDGLIFPADFYVLYMDDRSAPNPSPIIL 745

Query: 185 GRPFL 190
           GRPFL
Sbjct: 746 GRPFL 750

BLAST of Bhi04G000863 vs. ExPASy TrEMBL
Match: A0A6P6TEC3 (uncharacterized protein LOC113700582 OS=Coffea arabica OX=13443 GN=LOC113700582 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 59/133 (44.36%), Postives = 89/133 (66.92%), Query Frame = 0

Query: 58  SKQWVKKEEEMIIAHATAVMLS-KLPSKLDDPGMFCLPCTVSKQKLQNALVDLGVAMSIM 117
           +K+ +K +E +++    +V+L  KLP K  DPGMF +PC +    ++NA++DLG ++++M
Sbjct: 328 NKRKLKGDERVMVGENVSVVLQRKLPPKCGDPGMFAIPCKIGHSSIKNAMIDLGASINVM 387

Query: 118 PASLFYELGLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDFYVLKYDENTY 177
           P S++  L L  LK   +IIQLA+R+ + P G+V DVLV +DG I P DFYVL  D+ + 
Sbjct: 388 PKSIYDSLNLGPLKETGIIIQLADRTCAYPDGIVDDVLVQIDGLIFPADFYVLYMDDRSA 447

Query: 178 SPWNSIILGRPFL 190
              + IILGRPFL
Sbjct: 448 LNPSPIILGRPFL 460

BLAST of Bhi04G000863 vs. ExPASy TrEMBL
Match: A0A151QLN1 (Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_048719 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-23
Identity = 71/203 (34.98%), Postives = 105/203 (51.72%), Query Frame = 0

Query: 9   SDSLEKLDFKAYTLVAPFPSGLFNHEKKEEKDKQTKSPRKKIANSSEM------------ 68
           S S    D     +  PFP    + +K EE DK      +K+  +  +            
Sbjct: 448 SSSAHSDDLHQPPIPLPFPPKSISSKKMEEVDKDILETFRKVEVNIPLLDAIKQIPKYAK 507

Query: 69  ------SSKQWVKKEEEMIIAHATAVMLSK----LPSKLDDPGMFCLPCTVSKQKLQNAL 128
                 + K+ +K  E + +    + ++ K    +P K  DPG FC+PC +   K +NA+
Sbjct: 508 FLKDLCTHKRKLKGNERISMGRNVSALIGKSVPHIPEKCKDPGTFCVPCIIGNNKFENAM 567

Query: 129 VDLGVAMSIMPASLFYELGLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDF 188
           +DLG ++++MP S+F  L L  L+ M ++IQLANRS++ P G V DVLV V   I PTDF
Sbjct: 568 LDLGASINVMPLSIFNSLSLGTLQPMGMVIQLANRSVAHPTGFVEDVLVRVGELIFPTDF 627

Query: 189 YVLKYDENTYSPWNSIILGRPFL 190
           YVL  ++  Y  +  IILGRPFL
Sbjct: 628 YVLDMEDGFYQGFVPIILGRPFL 650

BLAST of Bhi04G000863 vs. ExPASy TrEMBL
Match: A0A371F6J7 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_46467 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-23
Identity = 71/191 (37.17%), Postives = 109/191 (57.07%), Query Frame = 0

Query: 8   NSDSLEKLDFKAYTLVAPFPS-GLFNHEKKEEKDKQTKSPR-KKIANSSEMSSKQWVKKE 67
           N++S  K D +A T + PFPS  L   + K + D    SP+  K      +  ++ +K  
Sbjct: 72  NTESKTKADSRAKTTLLPFPSRSLLARKPKTDDDFLQMSPKYAKFLKDLCIHKRKKLKVR 131

Query: 68  EEM-------IIAHATAVMLSKLPSKLDDPGMFCLPCTVSKQKLQNALVDLGVAMSIMPA 127
            E+       I    T      L  K  DPG+F +PCT+      +A++DLG ++++MPA
Sbjct: 132 AEVGGVLSTFIQKEVTTRTQPTLSGKCRDPGIFSIPCTIGDCTFVDAMLDLGASINVMPA 191

Query: 128 SLFYELGLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDFYVLKYDENTYSP 187
           S++  L   DL+   ++IQLANRS+ +P+G++ DVLV V+  I PTDFYVL  ++ TY  
Sbjct: 192 SVYKSLNFEDLEPTGIVIQLANRSVVQPVGILKDVLVQVNELIFPTDFYVLNMEDETYGK 251

Query: 188 WNSIILGRPFL 190
            +++ILGRPFL
Sbjct: 252 RSTLILGRPFL 262

BLAST of Bhi04G000863 vs. ExPASy TrEMBL
Match: A0A6P6UTS9 (uncharacterized protein LOC113714290 OS=Coffea arabica OX=13443 GN=LOC113714290 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 65  EEEMIIAHATAVMLSKLPSKLDDPGMFCLPCTVSKQKLQNALVDLGVAMSIMPASLFYEL 124
           E  M+  + +AV+  KLP K  DPG+F +PC +    ++NA++DLG ++++MP S++  L
Sbjct: 487 ERVMVGENVSAVLQRKLPPKCGDPGIFAIPCKIGHSSIKNAMIDLGASINVMPKSIYDSL 546

Query: 125 GLLDLKSMNVIIQLANRSLSKPMGVVHDVLVNVDGPISPTDFYVLKYDENTYSPWNSIIL 184
            L  LK   +IIQLANR+ + P G+V DVLV V+G I P DFYVL  D+ +    + IIL
Sbjct: 547 NLGPLKETGIIIQLANRTCAYPDGIVEDVLVQVNGLIFPADFYVLYMDDRSAPNPSPIIL 606

Query: 185 GRPFL 190
            RPFL
Sbjct: 607 ERPFL 611

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P6U9P99.5e-2447.20uncharacterized protein LOC113708414 OS=Coffea arabica OX=13443 GN=LOC113708414 ... [more]
A0A6P6TEC33.6e-2344.36uncharacterized protein LOC113700582 OS=Coffea arabica OX=13443 GN=LOC113700582 ... [more]
A0A151QLN18.1e-2334.98Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_048719 ... [more]
A0A371F6J78.1e-2337.17Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_46467 P... [more]
A0A6P6UTS92.3e-2245.60uncharacterized protein LOC113714290 OS=Coffea arabica OX=13443 GN=LOC113714290 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 69..189
e-value: 8.4E-18
score: 66.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..59
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 31..189
NoneNo IPR availablePANTHERPTHR33067:SF20ELEMENT PROTEIN, PUTATIVE-RELATEDcoord: 31..189
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 93..189
e-value: 8.00492E-10
score: 51.5684

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000863Bhi04M000863mRNA