Bhi04G000836 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000836
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	chr4: 25912394 .. 25916730 (+)
RNA-Seq Expression	Bhi04G000836
Synteny	Bhi04G000836

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACTCAAGGCGTAGAATTAACGAACAAAAGAAAGAAGAAAATGAAACAGAAGTAAATAAATGATGAATGACTCAGAAGCTTCCGACTGGTCGAGCTGAGGGAGGAGGAGGATAAAGCTATGGCGTCCCTGAATGTCACCACCGCTTTTTTATCCCTCCGGCAGCCGGAGTTCCCTTCCGACAATGTGAATCGCCGATGCCTCATCGGAAATTTCCCTAATCGGAGACCGACCAGGCCGCTCTCCATCGCTGCAAATTCTTCTGAGCCATTTCTGTCCACTCCTGCCGAAAAACCTGAGATCGAGCTTGAATTTATTGGGGTAACTTCGCGTGGAAGAATTCGTTATCGGTAATTTGAGTTTAATTCCGTGGATTTTGTTGTTTGGTAACTGTTTGATGTTTGTGGTTCTTTGGTTCGAACAGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACAAGGCTAAGGCTATAAGTGGCGAGAAGCTGTTGAGGAATATAATGCTGGATAAAAAAATCGAGTTGTACGCCCCATATGTAAGTTTTGATTTCTGCACAATATGGAGTGTGTTGTGAATTGTGATTTATTTTTGAACCGATTCGTATGTTGCCTAACCCGCAAAGATTTAGCCATCGCAAGAATATAGTGGATTATTAATGTCATTGTCATCAACTTCTAGTAATGTAAGAGAAATGTGAAGGAAAGGATGATATGCGGTGATCCATGGAGTTTGCCTACGACGGTATTGGATAATGATGACTGTTTCTTGAAACCTTTTTAATGAGTTTGAGCTGATATTAGAATACCATATTTAGGACGACGCCTTAGTCTGTCTGATCATCATGCCTCAGTTAAACCATGTTATAAACCGTGGCCTTGCAATTCAGTCTTTATTCCCAACAATTTCGTTAAAGTTTACATAGTTCAATCCAGTAAGGCCTAAAGACTAGAGCAATCGCTTTAGTTAAGGCATTTTTAATAATCATTTAGTTAATAGTATTTGGTTTTTGATAATTAAGTTTGAAAAACACTACTTCCATGCCCCGTATGCTGATTGGGCTCTTCGACCTTGGAGGTTGAGGATGAGGCAGAGTGGTAGGTTGGCCCAAAGGCCCTACTCCCTTCCCTTGGCTCCATTCGCCTTGTTTCGGCCTCTATTCGGCTTCTTTTTTCCCCTATTTATTAGATTTGTTCTTTTGGTCCAAAATTACTCATAATAATGGTTTTTGAAAATTTAACTTAAAAGCACTACTTTCATCATAGTTTGATTTATTCTATACAATCTAAAAAGCTTTAAAATCCACGTTAATTTTTGGAAAATAAAAGTTTTTAACATGCATTTTTTGTTTTTGAGTTCAGTAAAGAATTCAAATGTTTCTTAATGAATGTAAACTCAGTAAAGAAATTGTGAGAAAACAAACACAATGAAATTGTAATAAAATAGGCTGGAATAATTCAACATTCATTGTTTTGATGATTAATCAATGATTGCCAAATTATTGATAAAATATTTCATTCTACATAACCTGTCAACTTTAAGTTTAACATGTTATAAGAGCAAAAGATCCTTAGGTATGAATGCCTGTATTGTCATTTCTTATCTTGTGCAGATTTCTAAGCGTACAGGACTGGAGGAATATTAAATAATTTAACAATGAAAATAATACTTAATCATTGTCGCCTGTGTTTTCTTGCATGATGTGTTATTGAAATGCATCCAAATGTTCTCAGGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGCGGGACCTGTATTGTCGAGGTAGTTTCCTAGCATACCCTTGTAGTTAGAGCTCCAGTACTTTTGCTCTGACCATTTTTTTTTCTGCTAGCCTGCTGGTGAAGTAACATAAAATGAAATTGCGCCTTCTTTGAGGTTGAAGGTTAGACTGTGGTCTGCTTCTTCTGGACGAAGCAGAACAAATGCACGTCAAAGTTGTAAATAATTGAGATGGAAAATTGGAGAGTAGAAAGTTCACCCGTAGGCTAAAGATCGGGATTTTTCTGATTGCAAAACAGTGGGAAAAGATGCTGCTTTTTTTTATTCAACCATACAAATATTCTAACCATTTGATTTTTAGTTTTTTAAAAATAAGCCTTAGTCTTGTGATCTACTTTTTTCAATGTTTTCAAAAATCAAGTCAAGTTTTGAAAATTAGAAAAAGTAGTTTTTAAAATTTGTTTTTATTTTTTAAATTTGGCTAAGAATTCAACTCTTTTACCAAAGAAAAATAGAAAACATCATAAGAAATTGAGAGAAAATAGACTTAATTTTCAGAATCAAAACCAAACGGTTGCATGACGGGCCTAAATAATTCATTTATTCAATTTTCTCTTTTCATCACTGCATCACGCCTTGTTGAGTATAAATTATAGGTAGAAGAAAATCTAAAGCAGAGGACAGAGATGTGCATATCTTTTCATTTTAATACAAAGAACTGGATATCTGATGAGGGTCGCTACATCATTGTGCAGATAATTGATGGGAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGGTATGATAGTAATTGATAGACCTATCTCTTTTTCTCAGCCTTTTTTGTTCTTCTAAAACCTTTTTATTCACCATGGTACTTCCATGTTGCGTTATTAGCTATGAATTAGTTTTTATTGGCCAACATAGCTCCTACTGAGCTGTACTCCTCCCTTTCAAGTGAGAGGTTTAAATCTTCACACCTCGCATTTGTTGCACTAAAAAAGGAAGTTCAAGTTTTTCTCTACCCGTCTGTGTATTGTGTTAGGTTAGTCTTCTCTAAGGTCCAATAAGAAAACATTTTATCCCCAAAACTGCATGTGTAGGGCCAAGTTATGATAGGTTCTATAATAACTTCATCACTGTTTCTCTATTGTTAGCCCAAACAAAATCAAAATCATAGTCCAGGTAAACAAGCATTGAGGAATTGTTTGAACAGTTCAATTAATTCTAATCTAATAAGTTCAACTTTCTGAAATATTGTCGGAAGCCTGATTCTTTTTTCTTTTTTTTTTCATATTTTCTTAAAGTTTTTCATTCATTATTTGTTCCCGTGGAGCGATATTAACTTCGGTTGTGACAATTCAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTACTGCCAAGAACCCATCATCTTAGTACCTATTTGCTTCTTTGTTCAGATCTACATGACAATCCTTCTATCATTGCATTGAAAATATAAGATCCATGATAGCCCTAGTTGACCTCCACATGATTAGACTGCCTTTCTTTTGATTAAAGGCAAGCTCTCTGGCACATGGCAAAGCCAATTTTGATATGGTGGGACAAAATTTTACTTCAAACTTTTAATATGTGTATATATAGACTAAACTACAATAAATACCCTAAACTTCGTCTTCAAAAAAATACCCCTATTTTTTCAAAAATTGCAATACTATCTAATCTATTATCTGCTCTTCAAAATCAACCACCTTGAAGTAGAAATCCATTAGAATGTTGATCAAACATTCATACTTGGTTGGAACAATGTGGTAATGACCTAGAATGATGTGACAGCCATTCCAATTTTCATTCTAGGTCACACCATATCGTTCTAGGTCTTATTTTCTATTCAACAGTCTAATGGATTTTAAAACACATTTGCGAAAGATCGAAGTTAATTTGACAACTTCTGAATGTTTGTAAGATTATTTTTTGAAACATAGGGCAAAATTATATAGATTCTTAATTTAGGTAAGATTTTGAATCTAAGATAAAGGAGGGATGATAAACAATAGGCTTTCTCCTTCTTTCTTTCTATCCTTGCTCAAGTCCCCCTTCCTTCCATTAATATAGGTGGACCATTGGTTACAGGTTGTGGTCCAAAGGTTGCCCCAATGGAAGAAGTGATTTAGAGTTGCATCTTTATGTAGAGGCTGTGATTTGTTGCAAAATCAATAGATTATATTATTCTACACCAACCAAGACCTACCTTGAAAGCTGCTGCTCATAAACAAATTTGTGGCTTAACACTCAAAATATTAGTTGTTACCACGTTTACTTTTGCTTTACCTTTATGTAAGTTGAAATTGTATATGTTGAGAAACTTAGTGGAAAAATGAGAGATCAAGTCTTTTAATTGTTAATATTGGCACGTGTATTGTTTATTCCCACTTTCTTATACTTCATGTATGAAATAAGATTGCGAAGGAACAGGAAGATTATAGCGTGTGATTTGCTTGGACTTTAACATAATTCAACTGGTATACATATATATTCTCGAGTTTCAAA

mRNA sequence

AAAAACTCAAGGCGTAGAATTAACGAACAAAAGAAAGAAGAAAATGAAACAGAAGTAAATAAATGATGAATGACTCAGAAGCTTCCGACTGGTCGAGCTGAGGGAGGAGGAGGATAAAGCTATGGCGTCCCTGAATGTCACCACCGCTTTTTTATCCCTCCGGCAGCCGGAGTTCCCTTCCGACAATGTGAATCGCCGATGCCTCATCGGAAATTTCCCTAATCGGAGACCGACCAGGCCGCTCTCCATCGCTGCAAATTCTTCTGAGCCATTTCTGTCCACTCCTGCCGAAAAACCTGAGATCGAGCTTGAATTTATTGGGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACAAGGCTAAGGCTATAAGTGGCGAGAAGCTGTTGAGGAATATAATGCTGGATAAAAAAATCGAGTTGTACGCCCCATATGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGCGGGACCTGTATTGTCGAGATAATTGATGGGAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTGGACCATTGGTTACAGGTTGTGGTCCAAAGGTTGCCCCAATGGAAGAAGTGATTTAGAGTTGCATCTTTATGTAGAGGCTGTGATTTGTTGCAAAATCAATAGATTATATTATTCTACACCAACCAAGACCTACCTTGAAAGCTGCTGCTCATAAACAAATTTGTGGCTTAACACTCAAAATATTAGTTGTTACCACGTTTACTTTTGCTTTACCTTTATGTAAGTTGAAATTGTATATGTTGAGAAACTTAGTGGAAAAATGAGAGATCAAGTCTTTTAATTGTTAATATTGGCACGTGTATTGTTTATTCCCACTTTCTTATACTTCATGTATGAAATAAGATTGCGAAGGAACAGGAAGATTATAGCGTGTGATTTGCTTGGACTTTAACATAATTCAACTGGTATACATATATATTCTCGAGTTTCAAA

Coding sequence (CDS)

ATGGCGTCCCTGAATGTCACCACCGCTTTTTTATCCCTCCGGCAGCCGGAGTTCCCTTCCGACAATGTGAATCGCCGATGCCTCATCGGAAATTTCCCTAATCGGAGACCGACCAGGCCGCTCTCCATCGCTGCAAATTCTTCTGAGCCATTTCTGTCCACTCCTGCCGAAAAACCTGAGATCGAGCTTGAATTTATTGGGCCGAAGCCGGGAAGCGACGGATCGTTTCCGGTGGACAAGGCTAAGGCTATAAGTGGCGAGAAGCTGTTGAGGAATATAATGCTGGATAAAAAAATCGAGTTGTACGCCCCATATGGAAAATTGATGAACTGTGGTGGTGGTGGAAGTTGCGGGACCTGTATTGTCGAGATAATTGATGGGAAGGATCTATTGAATGAGAGAACAAATACTGAACTCCGTTACCTGAAGAAGAAACCCGAAAGTTGGAGGCTTGCTTGTCAGACAATTGTTGGCAATAAAGAGAACTCTGGCAAGGTGGACCATTGGTTACAGGTTGTGGTCCAAAGGTTGCCCCAATGGAAGAAGTGA

Protein sequence

MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLPQWKK

Homology

[Close]

BLAST of Bhi04G000836 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 217.6 bits (553), Expect = 8.1e-57
Identity = 106/141 (75.18%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 42  SIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIEL 101
           S ++ +S P   +     EIELEF GPKPGSDGS+PVDKAKA+SG+KLLR+IM D KIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 161
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 162 NSGKVDHWLQVVVQRLPQWKK 183
           NSGK      VVVQR+PQWKK
Sbjct: 159 NSGK------VVVQRIPQWKK 173

[Close]

BLAST of Bhi04G000836 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-52
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 42  SIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIEL 101
           S ++ +S P   +     EIELEF GPKPGSDGS+PVDKAKA+SG+KLLR+IM D KIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKE 161
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKKKPESWRLACQTIVGNKE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE 158

Query: 162 NSGK 166
           NSGK
Sbjct: 159 NSGK 162

[Close]

BLAST of Bhi04G000836 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-38
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 42  SIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIEL 101
           S ++ +S P   +     EIELEF GPKPGSDGS+PVDKAKA+SG+KLLR+IM D KIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 145
           YA YGK+MNCGGGGSCGTCIVEI+DG+DLLNERT+TE RYLKK
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of Bhi04G000836 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 70/152 (46.05%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 31  NFPNRRPTRPLSIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLL 90
           N    +  R +S A  S  P    P E P ++  F+      DG+  V   +A  G+K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 91  RNIMLDKKIELYAPYGK-LMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW 150
           R+IMLD  IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 151 RLACQTIVGNKENSGKVDHWLQVVVQRLPQWK 182
           RLACQT VGN +++G       VV+Q+LP+WK
Sbjct: 160 RLACQTNVGNPDSTG------LVVIQQLPEWK 184

[Close]

BLAST of Bhi04G000836 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.6e-28
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 42  SIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIEL 101
           S ++ +S P   +     EIELEF GPKPGSDGS+PVDKAKA+SG+KLLR+IM D KIEL
Sbjct: 39  SSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIEL 98

Query: 102 YAPYGKLMNCGGGGSCGTCIVE 124
           YA YGK+MNCGGGGSCGTCIVE
Sbjct: 99  YAAYGKVMNCGGGGSCGTCIVE 120

[Close]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 70/152 (46.05%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 31  NFPNRRPTRPLSIAANSSEPFLSTPAEKPEIELEFIGPKPGSDGSFPVDKAKAISGEKLL 90
           N    +  R +S A  S  P    P E P ++  F+      DG+  V   +A  G+K L
Sbjct: 40  NAARTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQK-L 99

Query: 91  RNIMLDKKIELYAPYGK-LMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW 150
           R+IMLD  IELY PY K L NC G G+C TC+VEI++GK+LLN RT+ E   LK+KP++W
Sbjct: 100 RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNW 159

Query: 151 RLACQTIVGNKENSGKVDHWLQVVVQRLPQWK 182
           RLACQT VGN +++G       VV+Q+LP+WK
Sbjct: 160 RLACQTNVGNPDSTG------LVVIQQLPEWK 184

[Close]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot
Match: Q9CLA6 (Na(+)-translocating NADH-quinone reductase subunit F OS=Pasteurella multocida (strain Pm70) OX=272843 GN=nqrF PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEIID-GKDLLNERTNTELRYLKKK--PESWRLACQTIVGNKENSGKVD 168
           CGGGGSCG CIV++ + G D+L     TEL ++ K+   E +RL+CQ    N +NS KV+
Sbjct: 69  CGGGGSCGQCIVKVTEGGGDIL----PTELSHISKREAKEGYRLSCQV---NVKNSMKVE 121

[Close]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot
Match: Q0I5Y1 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=nqrF PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEIID-GKDLLNERTNTELRYLKKK--PESWRLACQTIVGNKENSGKVD 168
           CGGGGSCG CIV++ + G D+L     TEL ++ K+   E +RL+CQ    N +NS K++
Sbjct: 69  CGGGGSCGQCIVKVTEGGGDIL----PTELSHISKREAKEGYRLSCQV---NVKNSMKIE 121

[Close]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot
Match: A3MYM7 (Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=nqrF PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 158
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVKSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot
Match: Q7VNU4 (Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=nqrF PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 111 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 158
           CGGGGSCG C V++  G     E   TEL ++ KK   E WRLACQ  V
Sbjct: 71  CGGGGSCGQCKVQVNSGG---GEILPTELSHISKKEAKEGWRLACQVNV 116

[Close]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL
Match: A0A0A0LQ15 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379280 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60
           M+SLNVTTAFLSLRQPEF SDN NRRCLIGNFP+R+PTRPLS+AANSSEP LSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDNANRRCLIGNFPSRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFIGPKPGSDGSFPVD  KAISG+KLLRNIMLD K+ELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKLELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLPQW 180
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK      VVVQRLPQW
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK------VVVQRLPQW 176

Query: 181 KK 183
           KK
Sbjct: 181 KK 176

[Close]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL
Match: A0A1S3BBH4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488260 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 155/166 (93.37%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60
           M+SLNVTTAFLSLRQPEF SD VNRRCLIGNFPNR+PTRPLS+AANSSEP LSTPAEKPE
Sbjct: 1   MSSLNVTTAFLSLRQPEFFSDKVNRRCLIGNFPNRKPTRPLSVAANSSEPLLSTPAEKPE 60

Query: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120
           IELEFIGPKPGSDGSFPVD  KAISG+KLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFIGPKPGSDGSFPVDTVKAISGDKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 167
           IVEI+DGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV
Sbjct: 121 IVEILDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 166

[Close]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL
Match: A0A6J1BTF3 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004660 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.0e-84
Identity = 157/182 (86.26%), Postives = 165/182 (90.66%), Query Frame = 0


Query: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60
           MASLNVTTA LSLRQPEF S + NRRC+IGNFPNRRPT PLS+AANSSEP LS+PAEKPE
Sbjct: 1   MASLNVTTASLSLRQPEFRSGSGNRRCIIGNFPNRRPTVPLSVAANSSEPLLSSPAEKPE 60

Query: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+GP PGSDGS+PVD AKA+SGEKLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 61  IELEFLGPNPGSDGSYPVDTAKAVSGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 120

Query: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLPQW 180
           IVEIIDG  LLNERTNTELRYLKKKPE+WRLACQTIVGNKENSGK      VVVQRLPQW
Sbjct: 121 IVEIIDGNGLLNERTNTELRYLKKKPETWRLACQTIVGNKENSGK------VVVQRLPQW 176

Query: 181 KK 183
           KK
Sbjct: 181 KK 176

[Close]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL
Match: A0A6J1GHD4 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454210 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.7e-83
Identity = 155/182 (85.16%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60
           MASLNVTT  LSLR  EFPS + NRRC IGNF NR+PT PLS+A+NSSEP +S+P EKPE
Sbjct: 17  MASLNVTTTLLSLRPVEFPSGSANRRCFIGNFRNRKPTLPLSVASNSSEPLISSPPEKPE 76

Query: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+GPKPGSDGSFPV+ AKAISGEKLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 77  IELEFLGPKPGSDGSFPVNTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136

Query: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLPQW 180
           IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK      VVVQRLPQW
Sbjct: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK------VVVQRLPQW 192

Query: 181 KK 183
           KK
Sbjct: 197 KK 192

[Close]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL
Match: A0A6J1KTR7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496328 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.7e-83
Identity = 155/182 (85.16%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MASLNVTTAFLSLRQPEFPSDNVNRRCLIGNFPNRRPTRPLSIAANSSEPFLSTPAEKPE 60
           MASLNVTT  LSLR  EFPS + NRRC IGNFPNR+ T PLS+A+NSSEP +S+P +KPE
Sbjct: 17  MASLNVTTTLLSLRPLEFPSGSANRRCFIGNFPNRKWTLPLSVASNSSEPLISSPPDKPE 76

Query: 61  IELEFIGPKPGSDGSFPVDKAKAISGEKLLRNIMLDKKIELYAPYGKLMNCGGGGSCGTC 120
           IELEF+GPKPGSDGSFPVD AKAISGEKLLRNIMLD KIELYAPYGKLMNCGGGGSCGTC
Sbjct: 77  IELEFLGPKPGSDGSFPVDTAKAISGEKLLRNIMLDNKIELYAPYGKLMNCGGGGSCGTC 136

Query: 121 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVDHWLQVVVQRLPQW 180
           IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK      VVVQRLPQW
Sbjct: 137 IVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGK------VVVQRLPQW 192

Query: 181 KK 183
           KK
Sbjct: 197 KK 192

The following BLAST results are available for this feature:

BLAST of Bhi04G000836 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32590.1	8.1e-57	75.18	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	3.5e-52	77.42	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	1.3e-38	72.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT3G16250.1	1.3e-30	46.05	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.2	4.6e-28	70.73	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Bhi04G000836 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	1.8e-29	46.05	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]
Q9CLA6	1.6e-04	46.67	Na(+)-translocating NADH-quinone reductase subunit F OS=Pasteurella multocida (s...	[more]
Q0I5Y1	2.0e-04	45.00	Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus somnus (stra...	[more]
A3MYM7	2.7e-04	51.02	Na(+)-translocating NADH-quinone reductase subunit F OS=Actinobacillus pleuropne...	[more]
Q7VNU4	2.7e-04	51.02	Na(+)-translocating NADH-quinone reductase subunit F OS=Haemophilus ducreyi (str...	[more]

BLAST of Bhi04G000836 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ15	1.8e-88	89.56	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BBH4	1.2e-84	93.37	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1BTF3	6.0e-84	86.26	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A6J1GHD4	6.7e-83	85.16	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1KTR7	8.7e-83	85.16	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 78..175 e-value: 2.6E-16 score: 61.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 108..157 e-value: 1.5E-9 score: 37.6
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 48..181
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 48..181
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 89..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000836	Bhi04M000836	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051536	iron-sulfur cluster binding