Bhi04G000368 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000368
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr4: 10047832 .. 10048082 (-)
RNA-Seq Expression	Bhi04G000368
Synteny	Bhi04G000368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCCGGTGTGAAGCCGCGTGGTACAATACCAATATTAACAGCGCTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTCAGATGAATAACATCATCAATGGAGAAGACAATAATAATATTAATGTTGTGAAGTTAAAGAAAGAAGCAACCCCATCTCAGAAACACCACCGTCGGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTGA

mRNA sequence

GCGCCGGTGTGAAGCCGCGTGGTACAATACCAATATTAACAGCGCTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTCAGATGAATAACATCATCAATGGAGAAGACAATAATAATATTAATGTTGTGAAGTTAAAGAAAGAAGCAACCCCATCTCAGAAACACCACCGTCGGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTGA

Coding sequence (CDS)

GCGCCGGTGTGAAGCCGCGTGGTACAATACCAATATTAACAGCGCTGGCTTTTGTGGCGTTGCTGCTAATTTCTTCAGCTCAGATGAATAACATCATCAATGGAGAAGACAATAATAATATTAATGTTGTGAAGTTAAAGAAAGAAGCAACCCCATCTCAGAAACACCACCGTCGGATGAGGCCATTCCATGTTTTACAGTCAAGTAAGAGGAAGGTTCCAAATGCTTCAGACCCACTCCACAATCGTTGA

Protein sequence

AGVKPRGTIPILTALAFVALLLISSAQMNNIINGEDNNNINVVKLKKEATPSQKHHRRMRPFHVLQSSKRKVPNASDPLHNR

Homology

[Close]

BLAST of Bhi04G000368 vs. NCBI nr
Match: KAA0060932.1 (hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  AGVKPRG-TIPILTALAFVALLLISSAQMNNIINGEDNNNINVVKLKKE---ATPSQK-- 60
          AGVKPRG  I ILTA+ F+ LLL+ S+    +      +N+NVVKLKKE   ATPS    
Sbjct: 12 AGVKPRGIIITILTAVTFLTLLLLISSSSPIL------HNVNVVKLKKEGARATPSSSQK 71

Query: 61 -HHRRMR-PFHVLQSSKRKVPNASDPLHNR 83
           HHRRMR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 72 LHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]

BLAST of Bhi04G000368 vs. NCBI nr
Match: KGN62473.1 (hypothetical protein Csa_018580 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  AGVKPRG-TIPILTALAFVALLLISSAQMNNIINGEDNNNINVVKLKKE---ATPSQK-- 60
          AGV PRG  I +LT + F+ LLL+ S+      +    +N+N VKLKKE   ATPS +  
Sbjct: 12 AGVNPRGIVIALLTVVTFLTLLLLISS------SPPIPHNVNAVKLKKEGGRATPSSQKL 71

Query: 61 HHRRM-RPFHVLQSSKRKVPNASDPLHNR 83
          HHRRM RP +VLQSSKRKVPNASDPLHNR
Sbjct: 72 HHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

[Close]

BLAST of Bhi04G000368 vs. ExPASy TrEMBL
Match: A0A5A7UYF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00650 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.6e-14
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  AGVKPRG-TIPILTALAFVALLLISSAQMNNIINGEDNNNINVVKLKKE---ATPSQK-- 60
          AGVKPRG  I ILTA+ F+ LLL+ S+    +      +N+NVVKLKKE   ATPS    
Sbjct: 12 AGVKPRGIIITILTAVTFLTLLLLISSSSPIL------HNVNVVKLKKEGARATPSSSQK 71

Query: 61 -HHRRMR-PFHVLQSSKRKVPNASDPLHNR 83
           HHRRMR PF+VLQSSKRKVPNASDPLHNR
Sbjct: 72 LHHRRMRPPFYVLQSSKRKVPNASDPLHNR 95

[Close]

BLAST of Bhi04G000368 vs. ExPASy TrEMBL
Match: A0A0A0LL43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  AGVKPRG-TIPILTALAFVALLLISSAQMNNIINGEDNNNINVVKLKKE---ATPSQK-- 60
          AGV PRG  I +LT + F+ LLL+ S+      +    +N+N VKLKKE   ATPS +  
Sbjct: 12 AGVNPRGIVIALLTVVTFLTLLLLISS------SPPIPHNVNAVKLKKEGGRATPSSQKL 71

Query: 61 HHRRM-RPFHVLQSSKRKVPNASDPLHNR 83
          HHRRM RP +VLQSSKRKVPNASDPLHNR
Sbjct: 72 HHRRMRRPSYVLQSSKRKVPNASDPLHNR 94

The following BLAST results are available for this feature:

BLAST of Bhi04G000368 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000368 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060932.1	1.4e-13	63.33	hypothetical protein E6C27_scaffold501G00650 [Cucumis melo var. makuwa]	[more]
KGN62473.1	4.9e-11	58.43	hypothetical protein Csa_018580 [Cucumis sativus]	[more]

BLAST of Bhi04G000368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYF8	6.6e-14	63.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LL43	2.4e-11	58.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354990 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000368	Bhi04M000368	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane