Bhi04G000327 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000327
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Glutamate receptor
Location	chr4: 8575398 .. 8575661 (-)
RNA-Seq Expression	Bhi04G000327
Synteny	Bhi04G000327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

mRNA sequence

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Coding sequence (CDS)

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Protein sequence

MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAFESRDIQAAFMSAPHAKVFLAKHCKDYTK

Homology

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: KAG6598370.1 (Glutamate receptor 2.7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 74/88 (84.09%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQPS LDIETLKLQNATVGCN GS MKRALS+VM FH +N+KEI SVD FPNA 
Sbjct: 645 MMTISRSQPSILDIETLKLQNATVGCNKGSVMKRALSEVMQFHVENIKEIPSVDLFPNAL 704

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ES DIQAAFMSAPHAKVFLAKHCK YTK
Sbjct: 705 ESGDIQAAFMSAPHAKVFLAKHCKGYTK 732

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022997326.1 (LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 4.1e-32
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQPS  DIETLKLQNATVGCN GS MKRALS+VM FH +N+KEI SVD FPNA 
Sbjct: 645 MMTISRSQPSXFDIETLKLQNATVGCNKGSVMKRALSEVMQFHVENIKEIPSVDLFPNAL 704

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ES DIQAAFMSAPHAKVFLAKHCK YTK
Sbjct: 705 ESGDIQAAFMSAPHAKVFLAKHCKGYTK 732

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022144166.1 (glutamate receptor 2.6-like isoform X2 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022144165.1 (glutamate receptor 2.6-like isoform X1 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_038885764.1 (glutamate receptor 2.5-like [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 9.2e-24
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQP FLDIETL+L+NATVGCN  S M R LS V+   P+ +K+I SVD FP+A 
Sbjct: 651 MMTLSRSQPWFLDIETLRLKNATVGCNKNSVMVRFLSQVLLLPPEKIKQIPSVDLFPHAL 710

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHAKVFLAKHCK YT+
Sbjct: 711 EKGEIQAAFFSGPHAKVFLAKHCKYYTQ 738

[Close]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL
Match: A0A6J1K770 (LOW QUALITY PROTEIN: glutamate receptor 2.7-like OS=Cucurbita maxima OX=3661 GN=LOC111492271 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.0e-32
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQPS  DIETLKLQNATVGCN GS MKRALS+VM FH +N+KEI SVD FPNA 
Sbjct: 645 MMTISRSQPSXFDIETLKLQNATVGCNKGSVMKRALSEVMQFHVENIKEIPSVDLFPNAL 704

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ES DIQAAFMSAPHAKVFLAKHCK YTK
Sbjct: 705 ESGDIQAAFMSAPHAKVFLAKHCKGYTK 732

[Close]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL
Match: A0A6J1CSI0 (glutamate receptor 2.6-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013923 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.6e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL
Match: A0A6J1CQW2 (Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111013923 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.6e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL
Match: A0A0A0LL89 (PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 1297 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 1356

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 1357 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 1384

[Close]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL
Match: A0A5A7V316 (Glutamate receptor 2.5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00390 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 2604 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 2663

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 2664 EKGEIQAAFFSGAHAKVFLAKHCKLYTK 2691

The following BLAST results are available for this feature:

BLAST of Bhi04G000327 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000327 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000327 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598370.1	1.1e-32	84.09	Glutamate receptor 2.7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022997326.1	4.1e-32	82.95	LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima]	[more]
XP_022144166.1	7.5e-26	70.45	glutamate receptor 2.6-like isoform X2 [Momordica charantia]	[more]
XP_022144165.1	7.5e-26	70.45	glutamate receptor 2.6-like isoform X1 [Momordica charantia]	[more]
XP_038885764.1	9.2e-24	67.05	glutamate receptor 2.5-like [Benincasa hispida]	[more]

BLAST of Bhi04G000327 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K770	2.0e-32	82.95	LOW QUALITY PROTEIN: glutamate receptor 2.7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CSI0	3.6e-26	70.45	glutamate receptor 2.6-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CQW2	3.6e-26	70.45	Glutamate receptor OS=Momordica charantia OX=3673 GN=LOC111013923 PE=3 SV=1	[more]
A0A0A0LL89	3.8e-23	65.91	PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 S...	[more]
A0A5A7V316	1.1e-22	65.91	Glutamate receptor 2.5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.190.10		coord: 6..88 e-value: 2.1E-6 score: 29.6
None	No IPR available	PANTHER	PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	coord: 1..87
None	No IPR available	PANTHER	PTHR18966:SF401	GLUTAMATE RECEPTOR	coord: 1..87
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 6..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000327	Bhi04M000327	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015276	ligand-gated ion channel activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0038023	signaling receptor activity