Bhi04G000201 (gene) Wax gourd (B227) v1

Overview
NameBhi04G000201
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr4: 5447337 .. 5447534 (-)
RNA-Seq ExpressionBhi04G000201
SyntenyBhi04G000201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

mRNA sequence

ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

Coding sequence (CDS)

ATGGCAGGAAGGGATGAGTTAACGTGGACGCCATTGATTACTTGGTATGGACAGAATGATGATCTGAATGAGGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGGTAGCATGGAAAGCCATGTTCTTTGGATATGTGCACCGTGGTCTTTTCGAGGATGCCTCCAAACACTCTTTATGGAAATGCGTTTGA

Protein sequence

MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASKHSLWKCV
Homology
BLAST of Bhi04G000201 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           M+ R  +TWT ++T YGQN+ +++AR + D M EK  V+W +M  GYV  G  EDA +
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEE 255

BLAST of Bhi04G000201 vs. TAIR 10
Match: AT1G56690.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           M  R+ +TWT +IT Y QN+ ++ AR L + M EK  V+W +M  GY   G  EDA +
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE 255

BLAST of Bhi04G000201 vs. TAIR 10
Match: AT1G14470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 24/56 (42.86%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M   D ++WT +IT + +  DL  AR   D M EK  V+W AM  GY   G  EDA
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDA 248

BLAST of Bhi04G000201 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 0

Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           +D  TWT +++ Y QN  + EAR L D M E+  V+W AM  GYV     E A +
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKE 333

BLAST of Bhi04G000201 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M G D + W  +I  + +   +++A+ L D M ++ GV+W +M  G+V  G F+DA
Sbjct: 187 MIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDA 242

BLAST of Bhi04G000201 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-10
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           M+ R  +TWT ++T YGQN+ +++AR + D M EK  V+W +M  GYV  G  EDA +
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEE 255

BLAST of Bhi04G000201 vs. ExPASy Swiss-Prot
Match: Q9FXB9 (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           M  R+ +TWT +IT Y QN+ ++ AR L + M EK  V+W +M  GY   G  EDA +
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE 255

BLAST of Bhi04G000201 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-06
Identity = 24/56 (42.86%), Postives = 30/56 (53.57%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M   D ++WT +IT + +  DL  AR   D M EK  V+W AM  GY   G  EDA
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDA 248

BLAST of Bhi04G000201 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 0

Query: 4   RDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDASK 59
           +D  TWT +++ Y QN  + EAR L D M E+  V+W AM  GYV     E A +
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKE 333

BLAST of Bhi04G000201 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RD  +W  +IT + +N ++N+A GL D M EK  ++W  M  GYV     E+A
Sbjct: 259 MPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEA 314

BLAST of Bhi04G000201 vs. NCBI nr
Match: KAG7020472.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 6.8e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_023537093.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 6.8e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. NCBI nr
Match: KAG6585558.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 6.8e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_023002238.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 6.8e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. NCBI nr
Match: XP_022951057.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 6.8e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. ExPASy TrEMBL
Match: A0A6J1KSZ4 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima OX=3661 GN=LOC111496149 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. ExPASy TrEMBL
Match: A0A6J1GGL5 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata OX=3662 GN=LOC111454019 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT LIT Y +NDDLN AR LLDTMTEKLGVAW AM  GYVH GLFEDA
Sbjct: 218 MPQRDELTWTTLITGYVRNDDLNGARELLDTMTEKLGVAWNAMISGYVHHGLFEDA 273

BLAST of Bhi04G000201 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-15
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT +IT Y +NDDLN A GLLDTMTEKLGVAW +M  GYVH GLF++A
Sbjct: 218 MPERDELTWTTMITGYVRNDDLNGAHGLLDTMTEKLGVAWNSMISGYVHHGLFQEA 273

BLAST of Bhi04G000201 vs. ExPASy TrEMBL
Match: A0A7J7DLB9 (Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G01336 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDEL+WT +IT Y +NDDL+ AR LLD MTEKLGVAW AM  GY+H GL++DA
Sbjct: 219 MPVRDELSWTTVITGYVRNDDLDTARELLDGMTEKLGVAWNAMISGYIHHGLYQDA 274

BLAST of Bhi04G000201 vs. ExPASy TrEMBL
Match: A0A2I4ENP7 (pentatricopeptide repeat-containing protein At1g25360 OS=Juglans regia OX=51240 GN=LOC108991303 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1   MAGRDELTWTPLITWYGQNDDLNEARGLLDTMTEKLGVAWKAMFFGYVHRGLFEDA 57
           M  RDELTWT +IT Y +NDDL  ARG+LD MTEKL VAW AM  GYVHRG  ++A
Sbjct: 218 MPERDELTWTTIITGYVRNDDLATARGILDGMTEKLEVAWNAMISGYVHRGFIQEA 273

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G09410.11.8e-1144.83pentatricopeptide (PPR) repeat-containing protein [more]
AT1G56690.18.6e-0943.10Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G14470.11.2e-0742.86Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G02750.11.8e-0641.82Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G42920.12.3e-0633.93Pentatricopeptide repeat (PPR-like) superfamily protein [more]
Match NameE-valueIdentityDescription
Q56XI12.6e-1044.83Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop... [more]
Q9FXB91.2e-0743.10Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop... [more]
Q9M9R61.7e-0642.86Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX... [more]
Q9SY022.5e-0541.82Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
O647663.3e-0539.29Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
KAG7020472.16.8e-1678.57Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023537093.16.8e-1678.57pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp... [more]
KAG6585558.16.8e-1678.57Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023002238.16.8e-1678.57pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima][more]
XP_022951057.16.8e-1678.57pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1KSZ43.3e-1678.57pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima O... [more]
A0A6J1GGL53.3e-1678.57pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata... [more]
A0A6J1CRF63.6e-1571.43pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti... [more]
A0A7J7DLB93.4e-1366.07Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 ... [more]
A0A2I4ENP79.9e-1366.07pentatricopeptide repeat-containing protein At1g25360 OS=Juglans regia OX=51240 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 38..57
e-value: 0.28
score: 11.5
coord: 8..35
e-value: 3.6E-4
score: 20.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 8..35
e-value: 3.3E-4
score: 18.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..59
e-value: 7.1E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR47929:SF13BNACNNG04730D PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000201Bhi04M000201mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding