Bhi04G000200 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000200
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	pentatricopeptide repeat-containing protein At1g25360-like
Location	chr4: 5445938 .. 5446126 (-)
RNA-Seq Expression	Bhi04G000200
Synteny	Bhi04G000200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAGATGGTTTAAACATGAAGCCAGAGACTATCTATATCTTCAATTATCTAGAGCAATTGAGCCTTGAAATGAAGAAGTTAGGATATATTCCAGACACCAAGTATGGGCTTCATTTTATAGAATCTGCACAAAGAATATGCCTTGTCTACTCAGTGACAAGCTTGCAGTTGGGTTTGAGATAA

mRNA sequence

ATGGTTGAAGATGGTTTAAACATGAAGCCAGAGACTATCTATATCTTCAATTATCTAGAGCAATTGAGCCTTGAAATGAAGAAGTTAGGATATATTCCAGACACCAAGTATGGGCTTCATTTTATAGAATCTGCACAAAGAATATGCCTTGTCTACTCAGTGACAAGCTTGCAGTTGGGTTTGAGATAA

Coding sequence (CDS)

ATGGTTGAAGATGGTTTAAACATGAAGCCAGAGACTATCTATATCTTCAATTATCTAGAGCAATTGAGCCTTGAAATGAAGAAGTTAGGATATATTCCAGACACCAAGTATGGGCTTCATTTTATAGAATCTGCACAAAGAATATGCCTTGTCTACTCAGTGACAAGCTTGCAGTTGGGTTTGAGATAA

Protein sequence

MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQRICLVYSVTSLQLGLR

Homology

[Close]

BLAST of Bhi04G000200 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIES 45
           +V+D  + + E +YI  YL+ L  EM++LGY+PDT + LH +ES
Sbjct: 670 LVDDTSHPEAEAVYI--YLQDLGKEMRRLGYVPDTSFVLHDVES 711

[Close]

BLAST of Bhi04G000200 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-04
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIES 45
           +V+D  + + E +YI  YL+ L  EM++LGY+PDT + LH +ES
Sbjct: 670 LVDDTSHPEAEAVYI--YLQDLGKEMRRLGYVPDTSFVLHDVES 711

[Close]

BLAST of Bhi04G000200 vs. NCBI nr
Match: XP_022144208.1 (pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144209.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144210.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144211.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144212.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144213.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144365.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144367.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144368.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144369.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144370.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144371.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144372.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144373.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + ++NYLEQLSLEMKKLGYIPDTKY LH +ES  +
Sbjct: 678 LVDD--TVHPEVLSVYNYLEQLSLEMKKLGYIPDTKYVLHDMESEHK 722

[Close]

BLAST of Bhi04G000200 vs. NCBI nr
Match: XP_016899981.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + I+NYLE+L+LEMKKLGYIPDTKY LH +ES  +
Sbjct: 623 LVDD--TVHPEVLSIYNYLEKLNLEMKKLGYIPDTKYVLHDMESEHK 667

[Close]

BLAST of Bhi04G000200 vs. NCBI nr
Match: KAA0065167.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + I+NYLE+L+LEMKKLGYIPDTKY LH +ES  +
Sbjct: 678 LVDD--TVHPEVLSIYNYLEKLNLEMKKLGYIPDTKYVLHDMESEHK 722

[Close]

BLAST of Bhi04G000200 vs. NCBI nr
Match: XP_038704582.1 (pentatricopeptide repeat-containing protein At1g25360 [Tripterygium wilfordii] >KAF5747155.1 pentatricopeptide repeat-containing protein [Tripterygium wilfordii])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 10  PETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           PE + ++NYLEQL LEM+KLGY+PDTK+ LH +E+AQ+
Sbjct: 686 PEVLAVYNYLEQLGLEMRKLGYVPDTKFVLHDMEAAQK 723

[Close]

BLAST of Bhi04G000200 vs. NCBI nr
Match: KAA8526699.1 (hypothetical protein F0562_008098 [Nyssa sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIES----------AQRICL 60
           +V+D   M PE   ++NYLEQL LEM+KLGY+PDTK+ LH +ES          ++++ +
Sbjct: 691 LVDDA--MHPEVQAVYNYLEQLRLEMRKLGYVPDTKFVLHDMESEHKEYVLSTHSEKLAV 750

[Close]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + ++NYLEQLSLEMKKLGYIPDTKY LH +ES  +
Sbjct: 678 LVDD--TVHPEVLSVYNYLEQLSLEMKKLGYIPDTKYVLHDMESEHK 722

[Close]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL
Match: A0A5A7VDN1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005030 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + I+NYLE+L+LEMKKLGYIPDTKY LH +ES  +
Sbjct: 678 LVDD--TVHPEVLSIYNYLEKLNLEMKKLGYIPDTKYVLHDMESEHK 722

[Close]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL
Match: A0A7J7DLB9 (Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G01336 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 10  PETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           PE + ++NYLEQL LEM+KLGY+PDTK+ LH +E+AQ+
Sbjct: 686 PEVLAVYNYLEQLGLEMRKLGYVPDTKFVLHDMEAAQK 723

[Close]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL
Match: A0A1S4DVG9 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=3656 GN=LOC103488043 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + I+NYLE+L+LEMKKLGYIPDTKY LH +ES  +
Sbjct: 623 LVDD--TVHPEVLSIYNYLEKLNLEMKKLGYIPDTKYVLHDMESEHK 667

[Close]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL
Match: A0A0A0LL72 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368270 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVEDGLNMKPETIYIFNYLEQLSLEMKKLGYIPDTKYGLHFIESAQR 48
           +V+D   + PE + I+NYLE+L+LEMKK+GYIPDTKY LH +ES  +
Sbjct: 678 LVDD--TVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHK 722

The following BLAST results are available for this feature:

BLAST of Bhi04G000200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25360.1	2.5e-05	45.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Bhi04G000200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRI5	3.5e-04	45.45	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi04G000200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144208.1	2.1e-06	61.70	pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]...	[more]
XP_016899981.1	1.0e-05	59.57	PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis m...	[more]
KAA0065167.1	1.0e-05	59.57	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_038704582.1	1.0e-05	63.16	pentatricopeptide repeat-containing protein At1g25360 [Tripterygium wilfordii] >...	[more]
KAA8526699.1	1.8e-05	42.86	hypothetical protein F0562_008098 [Nyssa sinensis]	[more]

BLAST of Bhi04G000200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRF6	1.0e-06	61.70	pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti...	[more]
A0A5A7VDN1	5.0e-06	59.57	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A7J7DLB9	5.0e-06	63.16	Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 ...	[more]
A0A1S4DVG9	5.0e-06	59.57	pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=36...	[more]
A0A0A0LL72	8.5e-06	57.45	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3682...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000200	Bhi04M000200	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding