Bhi04G000117 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000117
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotransposable element Tf2
Location	chr4: 3348110 .. 3348301 (-)
RNA-Seq Expression	Bhi04G000117
Synteny	Bhi04G000117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTCTTGCTGGAGCAGGAACACACGCTGATTTTACTTCAGTTCTCAATACAATCATCAGGCAGTTATCAAACCATGATGAAACCCAAGAAGATGCAAATTCTTCAGCATCTGTAAATAATGAAGTCGAAGATGACGAAAATGATTATGACCCTTCGCCGATTACGACATCAATGACCCGTTTTTAG

mRNA sequence

ATGAGTTCTCTTGCTGGAGCAGGAACACACGCTGATTTTACTTCAGTTCTCAATACAATCATCAGGCAGTTATCAAACCATGATGAAACCCAAGAAGATGCAAATTCTTCAGCATCTGTAAATAATGAAGTCGAAGATGACGAAAATGATTATGACCCTTCGCCGATTACGACATCAATGACCCGTTTTTAG

Coding sequence (CDS)

ATGAGTTCTCTTGCTGGAGCAGGAACACACGCTGATTTTACTTCAGTTCTCAATACAATCATCAGGCAGTTATCAAACCATGATGAAACCCAAGAAGATGCAAATTCTTCAGCATCTGTAAATAATGAAGTCGAAGATGACGAAAATGATTATGACCCTTCGCCGATTACGACATCAATGACCCGTTTTTAG

Protein sequence

MSSLAGAGTHADFTSVLNTIIRQLSNHDETQEDANSSASVNNEVEDDENDYDPSPITTSMTRF

Homology

[Close]

BLAST of Bhi04G000117 vs. NCBI nr
Match: TYK19825.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-04
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   MSSLAGAGTHADFTSVLNTIIRQLSNHDETQEDANSSASVNNEVED-DENDYD-PSPITT 60
           MSSL   G   +F SV+NT+  Q+SN D++Q + NS ASVNN +ED D++D+   +PITT
Sbjct: 139 MSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITT 198

Query: 61  SMTRF 64
           SM  F
Sbjct: 199 SMIHF 203

[Close]

BLAST of Bhi04G000117 vs. ExPASy TrEMBL
Match: A0A5D3D8C1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00290 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   MSSLAGAGTHADFTSVLNTIIRQLSNHDETQEDANSSASVNNEVED-DENDYD-PSPITT 60
           MSSL   G   +F SV+NT+  Q+SN D++Q + NS ASVNN +ED D++D+   +PITT
Sbjct: 139 MSSLIRTGFQEEFNSVVNTVAVQISNPDDSQAEVNSPASVNNVIEDEDDDDFSIHTPITT 198

Query: 61  SMTRF 64
           SM  F
Sbjct: 199 SMIHF 203

The following BLAST results are available for this feature:

BLAST of Bhi04G000117 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000117 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000117 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19825.1	5.8e-04	50.77	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Bhi04G000117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8C1	2.8e-04	50.77	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000117	Bhi04M000117	mRNA