Bhi04G000047 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000047
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr4: 1541288 .. 1541844 (-)
RNA-Seq Expression	Bhi04G000047
Synteny	Bhi04G000047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGTTCGAGTTTCTTCTTTCGAATTTGCAGAGTGGCTGTTTTGAAGAACGATTGAATGAAAGATGATTTTGTAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGGTATGAATATGATCTTTTGACATCCTTAAAAGTTTTCTAATGGCATTCCTGAATCCTGAACCCCTCCTTTTGTTTCAAATTTCGAAAAGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGTATGAACCCATATGACATTTCTTTCTTCTTCACTATAGATAGATTGATTGAAAAAATTTAATGGAGGACTGAGATTGCAGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

mRNA sequence

ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

Coding sequence (CDS)

ATGAAGAGTGTCGATCGATTCTCGGAAATCCGCCATTGTCCATGGAGATTGAAAGCAGAGCTTAAATTATTGGAAATCCAGAAGGAACTTGTCTCGAAGAACAGAAAATTGAAGGTTCTGAAACAGAGAAAAGAGACTCTTGAAGATGAAGTTGGATTTTTGAGACGAAGACTCTGGTACCTGCAGAAATTACAGAACCGTAGTCATGATTTAGAAAACTTGCCCATGGTTCTGGAATCGAAACAGAATCTGGATGGTGTCGAGGAAGATAAGGAGAAGCCTCCGGATAATGCATACACAAAATCGTTTGTTTAA

Protein sequence

MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHDLENLPMVLESKQNLDGVEEDKEKPPDNAYTKSFV

Homology

[Close]

BLAST of Bhi04G000047 vs. NCBI nr
Match: XP_038884216.1 (uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 4.4e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY 60
           MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY
Sbjct: 24  MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY 83

Query: 61  LQKLQNRSHDLENLPMVLESKQNLDGVEEDKEKPPDNAYTKSFV 105
           LQKLQNRSHDLENLPMVLESKQNLDGVEEDKEKPPDNAYTKSFV
Sbjct: 84  LQKLQNRSHDLENLPMVLESKQNLDGVEEDKEKPPDNAYTKSFV 127

[Close]

BLAST of Bhi04G000047 vs. NCBI nr
Match: XP_038884217.1 (uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 5.0e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY 60
           MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY
Sbjct: 24  MKSVDRFSEIRHCPWRLKAELKLLEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWY 83

Query: 61  LQKLQNRSHDLENLPMVLESKQNL 85
           LQKLQNRSHDLENLPMVLESKQNL
Sbjct: 84  LQKLQNRSHDLENLPMVLESKQNL 107

[Close]

BLAST of Bhi04G000047 vs. NCBI nr
Match: XP_022132126.1 (uncharacterized protein LOC111005070 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 24  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHD--LENLPMVLESK 83
           LE+QK+ VSK RKL+VL+QRKETL  EV FLR+RL YLQKLQNR HD   E+LPMVLE+K
Sbjct: 37  LEVQKDFVSKKRKLQVLRQRKETLGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETK 96

Query: 84  QNLDGVEEDK 92
           QNLDGVEE+K
Sbjct: 97  QNLDGVEEEK 106

[Close]

BLAST of Bhi04G000047 vs. ExPASy TrEMBL
Match: A0A6J1BRD5 (uncharacterized protein LOC111005070 OS=Momordica charantia OX=3673 GN=LOC111005070 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.0e-16
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 24  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHD--LENLPMVLESK 83
           LE+QK+ VSK RKL+VL+QRKETL  EV FLR+RL YLQKLQNR HD   E+LPMVLE+K
Sbjct: 37  LEVQKDFVSKKRKLQVLRQRKETLGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETK 96

Query: 84  QNLDGVEEDK 92
           QNLDGVEE+K
Sbjct: 97  QNLDGVEEEK 106

The following BLAST results are available for this feature:

BLAST of Bhi04G000047 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000047 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi04G000047 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884216.1	4.4e-49	100.00	uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida]	[more]
XP_038884217.1	5.0e-37	100.00	uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida]	[more]
XP_022132126.1	1.9e-15	74.29	uncharacterized protein LOC111005070 [Momordica charantia]	[more]

BLAST of Bhi04G000047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRD5	9.0e-16	74.29	uncharacterized protein LOC111005070 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..104
None	No IPR available	PANTHER	PTHR34807:SF6	SUBFAMILY NOT NAMED	coord: 23..83
None	No IPR available	PANTHER	PTHR34807	OS08G0270800 PROTEIN	coord: 23..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000047	Bhi04M000047	mRNA