Bhi03G002077 (gene) Wax gourd (B227) v1

Overview
NameBhi03G002077
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr3: 61240321 .. 61242075 (-)
RNA-Seq ExpressionBhi03G002077
SyntenyBhi03G002077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGGTTTTTCGCTCAAGTAAATGGGGATTTATTTCAAATCTTATTTTAATCATTGTTGTTGGAAGTTTTCCTTTGATAGACTTTCAAAATTGCTCATGGTTCGATTCTCTCAACTATTCATCTTTGACTTCTTGTATTTTGCACTAAGTTCAAAAGGTTGCTCATGATGAGTACTAGATAGGGTACTTAGACTTCAGAAGTAAAATGGGTGAGATATAAAGAGAAAGCCAAACGAAAACCCATAGTCAAGAAGGATGCTCCTTCATCTATCACAAACAAATATGGTGTTCGCATGTGTGGTCTCTCTACTGTGCATGAAGGGATCGATGTACCTTCTCCCTCTATAAAATGAAGACGCTCCAGTGTCGGGTTTCTATGAATAAGAAAGGAAAAGGACAAGTAAATACTGATGCTCTTACTTTGTCTGATCTAATTGGGCCTAGTAATGAAATTGTTATTAAAAAGGATAAATCTACATCTAGTATTTCTTAAGAGGATGTGCATGATTTTATAGTTGTGAGTCGGGAGTTTGATAATGTTAATGAGAATTTTGATCCCCCTTCGAAGCATTAGGAGTTTGTTAGCGTTTTTGTCTGTAATGGTCTAACTGTTGATTTACATGTGTCTTTCGTCATTGAGAATGTTTGTGGAGAGAATGTTGAAAAAAGTCTTGTTGCTGAAAATGATGACGATTACAATCTGCATTTGAAAGATGTTGTAAAAAGTATTGTTTCAAAAGATGTTGAGGTCGAAGGGAATCCTATAACTGTTGAATCTGAGAATGTGGTTGTTTTCCCATCTATGAGTGATAGTTTGCCTAGTATTGTTAGTGAACCTCTTAAAGAAACTACTCAGCCTATGCCTGAGACAACTACAGTCCCGATTATGGAGATTTTGTCTAGTAAAAAGGTTGATATATTTGATCAGAGTGTTGTTGATACTACTATGAAAGAAGTGAGTTTGAATATTGCTAATGCTGAAAAGCCTGTGTCTGTGAATAGTGAATCTAATGGGTCTGGTGATCAGACTATGAGGGAAGAATCTAGTCCTAATGATGACACTCTGCTGTCTAGAATGAGTTCTAAAAGAAACAATGTTATTAAAGAACATGTTGTTGCTTCCTCTGAAACATCAGAGGACTTTATTGAAAATTTTGAATTTGTAGAAGTTTCTGTGTCTTCTAGAGATTGGGGCTTAAAAAGAAGTTCTAATGATGATGACGTGGTTGCTCGTTCTCCAGTGAGTTGAGCTTCTACCAAGCCTAAAGGAATAAAGCATGTTGTTCTTATTTTACATGTTGTCCCTTTAAATGATGTTTCATTTTACATAGAGGAAGACGGCAACCAATGGAAATTTGTTGTTAAAAAGAACATTGTGGATGAGAAAAAACTATTTACGAGAGCTCAAGAGTACATGGAAATCATGGAGCTCATTCTTAAAGCTGAGCTGCAAGGAACAAAATTGAATTTAGGGCCATTTTACCCTCAAATTATTAGAGAATTTATTGTCAATTTGTCGCCTAATTTCGACAACTCATCTAACCCAAAGTATAGAAGAGTTCATGTTAGAAGACATTCATTTTTTTTTTTTTTTTTTTGGCTTCTGTCATTAATCAATTTCTAAACAGTAATGATTCTGTTAGTATATCTAAACAATGTCCATCTATGAGATCTTGTTTTTTAGTTGACTGAGGGTTCAAGGACAACCATGCCAAGAAAGGGTCAACTGTCTACATTCATTTTCATGTGA

mRNA sequence

ATGGTTGAGGAGTTTGTTAGCGTTTTTGTCTGTAATGGTCTAACTGTTGATTTACATGTGTCTTTCGTCATTGAGAATGTTTGTGGAGAGAATGTTGAAAAAAGTCTTGTTGCTGAAAATGATGACGATTACAATCTGCATTTGAAAGATGTTGTAAAAAGTATTGTTTCAAAAGATGTTGAGGTCGAAGGGAATCCTATAACTGTTGAATCTGAGAATGTGGTTGTTTTCCCATCTATGAGTGATAGTTTGCCTAGTATTGTTAGTGAACCTCTTAAAGAAACTACTCAGCCTATGCCTGAGACAACTACAGTCCCGATTATGGAGATTTTGTCTAGTAAAAAGGTTGATATATTTGATCAGAGTGTTGTTGATACTACTATGAAAGAAGTGAGTTTGAATATTGCTAATGCTGAAAAGCCTGTGTCTGTGAATAGTGAATCTAATGGGTCTGGTGATCAGACTATGAGGGAAGAATCTAGTCCTAATGATGACACTCTGCTGTCTAGAATGAGTTCTAAAAGAAACAATGTTATTAAAGAACATGTTGTTGCTTCCTCTGAAACATCAGAGGACTTTATTGAAAATTTTGAATTTGTAGAAGTTTCTGTGTCTTCTAGAGATTGGGGCTTAAAAAGAAGTTCTAATGATGATGACGTGGTTGCTCGTTCTCCACCTAAAGGAATAAAGCATGTTGTTCTTATTTTACATGTTGTCCCTTTAAATGATGTTTCATTTTACATAGAGGAAGACGGCAACCAATGGAAATTTGTTGTTAAAAAGAACATTGTGGATGAGAAAAAACTATTTACGAGAGCTCAAGAGTACATGGAAATCATGGAGCTCATTCTTAAAGCTGAGCTGCAAGGAACAAAATTGAATTTAGGGCCATTTTACCCTCAAATTATTAGAGAATTTATTGTCAATTTGTCGCCTAATTTCGACAACTCATCTAACCCAAAGTATAGAAGAGTTCATTTGACTGAGGGTTCAAGGACAACCATGCCAAGAAAGGGTCAACTGTCTACATTCATTTTCATGTGA

Coding sequence (CDS)

ATGGTTGAGGAGTTTGTTAGCGTTTTTGTCTGTAATGGTCTAACTGTTGATTTACATGTGTCTTTCGTCATTGAGAATGTTTGTGGAGAGAATGTTGAAAAAAGTCTTGTTGCTGAAAATGATGACGATTACAATCTGCATTTGAAAGATGTTGTAAAAAGTATTGTTTCAAAAGATGTTGAGGTCGAAGGGAATCCTATAACTGTTGAATCTGAGAATGTGGTTGTTTTCCCATCTATGAGTGATAGTTTGCCTAGTATTGTTAGTGAACCTCTTAAAGAAACTACTCAGCCTATGCCTGAGACAACTACAGTCCCGATTATGGAGATTTTGTCTAGTAAAAAGGTTGATATATTTGATCAGAGTGTTGTTGATACTACTATGAAAGAAGTGAGTTTGAATATTGCTAATGCTGAAAAGCCTGTGTCTGTGAATAGTGAATCTAATGGGTCTGGTGATCAGACTATGAGGGAAGAATCTAGTCCTAATGATGACACTCTGCTGTCTAGAATGAGTTCTAAAAGAAACAATGTTATTAAAGAACATGTTGTTGCTTCCTCTGAAACATCAGAGGACTTTATTGAAAATTTTGAATTTGTAGAAGTTTCTGTGTCTTCTAGAGATTGGGGCTTAAAAAGAAGTTCTAATGATGATGACGTGGTTGCTCGTTCTCCACCTAAAGGAATAAAGCATGTTGTTCTTATTTTACATGTTGTCCCTTTAAATGATGTTTCATTTTACATAGAGGAAGACGGCAACCAATGGAAATTTGTTGTTAAAAAGAACATTGTGGATGAGAAAAAACTATTTACGAGAGCTCAAGAGTACATGGAAATCATGGAGCTCATTCTTAAAGCTGAGCTGCAAGGAACAAAATTGAATTTAGGGCCATTTTACCCTCAAATTATTAGAGAATTTATTGTCAATTTGTCGCCTAATTTCGACAACTCATCTAACCCAAAGTATAGAAGAGTTCATTTGACTGAGGGTTCAAGGACAACCATGCCAAGAAAGGGTCAACTGTCTACATTCATTTTCATGTGA

Protein sequence

MVEEFVSVFVCNGLTVDLHVSFVIENVCGENVEKSLVAENDDDYNLHLKDVVKSIVSKDVEVEGNPITVESENVVVFPSMSDSLPSIVSEPLKETTQPMPETTTVPIMEILSSKKVDIFDQSVVDTTMKEVSLNIANAEKPVSVNSESNGSGDQTMREESSPNDDTLLSRMSSKRNNVIKEHVVASSETSEDFIENFEFVEVSVSSRDWGLKRSSNDDDVVARSPPKGIKHVVLILHVVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPFYPQIIREFIVNLSPNFDNSSNPKYRRVHLTEGSRTTMPRKGQLSTFIFM
Homology
BLAST of Bhi03G002077 vs. NCBI nr
Match: XP_038887050.1 (uncharacterized protein LOC120077220 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-16
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 238 VVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGP 297
           VVPL+ ++++ E     WKFVV K IV E+ LF +AQ Y+EIM L +K  +  + LN GP
Sbjct: 22  VVPLDSITYHSEGIAKMWKFVVNKRIVVERDLFEQAQNYLEIMNLFVKPSIVCSVLNFGP 81

Query: 298 FYPQIIREFIVNLSPNFDNSSNPKYRRVHLTE 330
           +YPQ++ EF VNLS  FDN  +  YR+VH+ E
Sbjct: 82  YYPQLVCEFYVNLSHQFDNEGSLDYRKVHVNE 113

BLAST of Bhi03G002077 vs. NCBI nr
Match: KAA0066044.1 (uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99852.1 uncharacterized protein E5676_scaffold446G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 5.6e-16
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 228 GIKHVVLILHVVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAE 287
           G K + L +  VP+N +SF++EE+  +WKFVV++ I DE  +  +    + IM LI KA 
Sbjct: 232 GRKKIPLNIPSVPINGISFHLEENVKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAG 291

Query: 288 LQGTKLNLGPFYPQIIREFIVNLSPNFDNSSNPKYRRVHLTEGSRTTMP 337
           L  T  ++GPFYPQ+IREFIVNL  +F++ S+P Y+ VH+     T  P
Sbjct: 292 LSKTISDVGPFYPQLIREFIVNLPADFNDPSSPNYQTVHIKGFKFTISP 340

BLAST of Bhi03G002077 vs. NCBI nr
Match: KAA0056211.1 (uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-15
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 239 VPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPF 298
           VP++ +SF+ EE    WKFV++K IVDE  +  + Q  M IM+LI KA L+ T  ++GPF
Sbjct: 239 VPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISDVGPF 298

Query: 299 YPQIIREFIVNLSPNFDNSSNPKYRRVHLT 329
           YPQ+IREFIVNL   F+N S+  Y+ VH+T
Sbjct: 299 YPQLIREFIVNLPNEFNNPSSADYQTVHIT 328

BLAST of Bhi03G002077 vs. NCBI nr
Match: XP_008465030.1 (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-15
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 239 VPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPF 298
           VP++ +SF+ EE    WKFV++K IVDE  +  + Q  M IM+LI KA L+ T  ++GPF
Sbjct: 239 VPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISDVGPF 298

Query: 299 YPQIIREFIVNLSPNFDNSSNPKYRRVHLT 329
           YPQ+IREFIVNL   F+N S+  Y+ VH+T
Sbjct: 299 YPQLIREFIVNLPNEFNNPSSADYQTVHIT 328

BLAST of Bhi03G002077 vs. NCBI nr
Match: XP_038904247.1 (uncharacterized protein LOC120090596 [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-15
Identity = 50/128 (39.06%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 203 SVSSRDWGLKRSSNDDDV-VARS---PPKGIKHVVLILHVVPLNDVSFYIEEDGNQWKFV 262
           SVS     L  SS++DDV + R+      G + +   + +V ++D+SF+ E++  +WKFV
Sbjct: 64  SVSDSSVQLSESSSEDDVAIVRNNFYTRIGRRKIPPNVPIVLIDDISFHSEDNVQRWKFV 123

Query: 263 VKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPFYPQIIREFIVNLSPNFDNSS 322
           V++ IVDEK    + +  ++IM+L+    L  T +NL PFYPQ++RE IVNL   FD+ +
Sbjct: 124 VQRCIVDEKTFSDQTKSCLKIMDLLQHVGLLKTVVNLSPFYPQLLRELIVNLPSKFDDPN 183

Query: 323 NPKYRRVH 327
           NP Y+++H
Sbjct: 184 NPDYKKIH 191

BLAST of Bhi03G002077 vs. ExPASy TrEMBL
Match: A0A5A7VFF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00670 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-16
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 228 GIKHVVLILHVVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAE 287
           G K + L +  VP+N +SF++EE+  +WKFVV++ I DE  +  +    + IM LI KA 
Sbjct: 232 GRKKIPLNIPSVPINGISFHLEENVKRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKAG 291

Query: 288 LQGTKLNLGPFYPQIIREFIVNLSPNFDNSSNPKYRRVHLTEGSRTTMP 337
           L  T  ++GPFYPQ+IREFIVNL  +F++ S+P Y+ VH+     T  P
Sbjct: 292 LSKTISDVGPFYPQLIREFIVNLPADFNDPSSPNYQTVHIKGFKFTISP 340

BLAST of Bhi03G002077 vs. ExPASy TrEMBL
Match: A0A5A7URQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 239 VPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPF 298
           VP++ +SF+ EE    WKFV++K IVDE  +  + Q  M IM+LI KA L+ T  ++GPF
Sbjct: 239 VPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISDVGPF 298

Query: 299 YPQIIREFIVNLSPNFDNSSNPKYRRVHLT 329
           YPQ+IREFIVNL   F+N S+  Y+ VH+T
Sbjct: 299 YPQLIREFIVNLPNEFNNPSSADYQTVHIT 328

BLAST of Bhi03G002077 vs. ExPASy TrEMBL
Match: A0A1S3CMY0 (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 239 VPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAELQGTKLNLGPF 298
           VP++ +SF+ EE    WKFV++K IVDE  +  + Q  M IM+LI KA L+ T  ++GPF
Sbjct: 239 VPIDGISFHHEESVQYWKFVMQKRIVDEVNISDKHQSCMSIMDLIHKAGLEKTISDVGPF 298

Query: 299 YPQIIREFIVNLSPNFDNSSNPKYRRVHLT 329
           YPQ+IREFIVNL   F+N S+  Y+ VH+T
Sbjct: 299 YPQLIREFIVNLPNEFNNPSSADYQTVHIT 328

BLAST of Bhi03G002077 vs. ExPASy TrEMBL
Match: A0A5A7SZY3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001920 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-15
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 228  GIKHVVLILHVVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAE 287
            G K + + +  VP++ +SF+ EE+  +WKFVV++ I DE  +  + Q  M IM+LI +A 
Sbjct: 974  GRKKIHVNIPSVPIDGISFHHEENVQRWKFVVQRRIADEVNISRKHQSCMSIMDLIHRAG 1033

Query: 288  LQGTKLNLGPFYPQIIREFIVNLSPNFDNSSNPKYRRVHL 328
            L+ T  N+GPFYPQ+IREFIVNL   F+N S+  Y+ +H+
Sbjct: 1034 LEKTISNVGPFYPQLIREFIVNLPDEFNNPSSLGYQMIHI 1073

BLAST of Bhi03G002077 vs. ExPASy TrEMBL
Match: A0A5A7T712 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001300 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-15
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 228 GIKHVVLILHVVPLNDVSFYIEEDGNQWKFVVKKNIVDEKKLFTRAQEYMEIMELILKAE 287
           G K +   +  V ++ +SF+++E   QWK+VV++ IVDE  +  +    +  M+LI+KA 
Sbjct: 7   GRKKIPSNISFVSIDGISFHLKESVQQWKYVVQRRIVDEVNVSDKHHSCLSAMDLIVKAG 66

Query: 288 LQGTKLNLGPFYPQIIREFIVNLSPNFDNSSNPKYRRVHLT 329
           L  T  N+GPFYPQ+IREFIVNL   F+N S+P Y+ VH++
Sbjct: 67  LSKTISNVGPFYPQLIREFIVNLLSEFNNPSSPDYQTVHIS 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038887050.14.3e-1648.91uncharacterized protein LOC120077220 [Benincasa hispida][more]
KAA0066044.15.6e-1644.04uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa] >TYJ99... [more]
KAA0056211.12.8e-1551.11uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa][more]
XP_008465030.12.8e-1551.11PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
XP_038904247.12.8e-1539.06uncharacterized protein LOC120090596 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A5A7VFF72.7e-1644.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URQ61.3e-1551.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CMY01.3e-1551.11uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=... [more]
A0A5A7SZY33.0e-1545.00Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... [more]
A0A5A7T7123.0e-1543.56Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M002077Bhi03M002077mRNA