Bhi03G001975 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001975
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein Ycf2-like
Location	chr3: 56003598 .. 56004892 (+)
RNA-Seq Expression	Bhi03G001975
Synteny	Bhi03G001975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAGCTATATATCCTGGAGAGTTTCTTTCTACCAAAACAAGATACTGTATATGTAGACATTAACCGTATCTTGATGGTGGATGATGAGGAGCTTTTTAGAAATTATCTTTGGGGTAGATTGGCCTTTGACCTTCTGGTTGATGTGATGCATAATGCCATATATGCTAAGTGTGCTATAGAATTAACATTAGGAGGGTAGCATGGCATACGAAGTCATACCTACCCTTAGTACTGGACAAAACTGCTTTGCAAGGAGAGTTAATATGAATCTTCCAAGAATAATAAATTGTGTTGCTGATAGCCAACCAAAATGGAAGGCACATGAAGAAGAAGGTTTTCGATTCACCAGAGGTAACATTTGTATAACAGTCTAAGTAATAAAATGTTTACTAATAGTTTTTGTCTCTTCATTATGTTTTGTAGCTCGAAATTTGTCCACTCTTAGCCACTCCTATAGAAATGAAAATTCCATGGTTTGAGCCATTCCTGGAAAAAGAGAAAAAGGTAATCCAAAAAGTTGAATTGGAACTTCAAAAGAAAAAACCAAAAACACATGTAGTGGACCTCACGATTAATAGAAGCCTAACAAATCAATAGAGATCGAACATATTACAGAGCAACTAGAGAGAATGGAGAAACATCAAGAGATGATAAATAAAAAAACCAATGAAAATCAACAGGTTGTGATGAAGAACCAAGACTCCTTGAGGCAACAAATGGTTGAATTCATGGATATACAAATGAATATGATATTGGAACAAATGAAAAAAACGAAGGAGCATAGATATACTTAAAATACCGGTGAAGTCTTTGTGGTACGTTCTATAATTACAATATAGTTATTTAATCCATACAAAAAGCTGAATAACGCTTACATACAAACAGGCGACATCTGAATTCACAAAGAAACTGGATAATATGGAAGATGATAAGGAGATAATCAAGACAATCCAAATCTTGACACAGCTTGTGGTGTTGAAAAATTAAAGCCAAAGAGAGATGATGAACATGAAGGAGATGGAGTAACAGGGAATAAAGAACGACAAACCATATTACCTAATATGGTAACCCAAAAATCGCAAGAATCTAAAGTGAAAGAACCAGAAAGGTCAAAGACAGAAGGGAGAGGAAACATATGCTACAAGGTAATAAAATACCAATGAACTGAACTTTATAGTTTAGATCCTAACAATACATGATATCTTGTGTACTGTTTATGACATGTAATAGTCTGTTGAAGATCCAGACGATATAATCGACAATGTTATACAGTCAATAGATGAGGAGGAG

mRNA sequence

ATGGCCCAGCTATATATCCTGGAGAGTTTCTTTCTACCAAAACAAGATACTGTATATGTAGACATTAACCGTATCTTGATGGTGGATGATGAGGAGCTTTTTAGAAATTATCTTTGGGGTAGATTGGCCTTTGACCTTCTGGTTGATGTGATGCATAATGCCATATATGCTAAGTGTGCTATAGAATTAACATTAGGAGGTACTGGACAAAACTGCTTTGCAAGGAGAGTTAATATGAATCTTCCAAGAATAATAAATTGTGTTGCTGATAGCCAACCAAAATGGAAGGCACATGAAGAAGAAGGTTTTCGATTCACCAGAGCTTGTGGTGTTGAAAAATTAAAGCCAAAGAGAGATGATGAACATGAAGGAGATGGAGTAACAGGGAATAAAGAACGACAAACCATATTACCTAATATGGTAACCCAAAAATCGCAAGAATCTAAAGTGAAAGAACCAGAAAGGTCAAAGACAGAAGGGAGAGGAAACATATGCTACAAGTCTGTTGAAGATCCAGACGATATAATCGACAATGTTATACAGTCAATAGATGAGGAGGAG

Coding sequence (CDS)

ATGGCCCAGCTATATATCCTGGAGAGTTTCTTTCTACCAAAACAAGATACTGTATATGTAGACATTAACCGTATCTTGATGGTGGATGATGAGGAGCTTTTTAGAAATTATCTTTGGGGTAGATTGGCCTTTGACCTTCTGGTTGATGTGATGCATAATGCCATATATGCTAAGTGTGCTATAGAATTAACATTAGGAGGTACTGGACAAAACTGCTTTGCAAGGAGAGTTAATATGAATCTTCCAAGAATAATAAATTGTGTTGCTGATAGCCAACCAAAATGGAAGGCACATGAAGAAGAAGGTTTTCGATTCACCAGAGCTTGTGGTGTTGAAAAATTAAAGCCAAAGAGAGATGATGAACATGAAGGAGATGGAGTAACAGGGAATAAAGAACGACAAACCATATTACCTAATATGGTAACCCAAAAATCGCAAGAATCTAAAGTGAAAGAACCAGAAAGGTCAAAGACAGAAGGGAGAGGAAACATATGCTACAAGTCTGTTGAAGATCCAGACGATATAATCGACAATGTTATACAGTCAATAGATGAGGAGGAG

Protein sequence

MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCAIELTLGGTGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGFRFTRACGVEKLKPKRDDEHEGDGVTGNKERQTILPNMVTQKSQESKVKEPERSKTEGRGNICYKSVEDPDDIIDNVIQSIDEEE

Homology

[Close]

BLAST of Bhi03G001975 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-18
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+ A+ +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQ 144

Query: 61  IELTLGG------------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEG 104
             +++GG                  T  N FA R++  +PRIIN  AD+QPKWK  +++ 
Sbjct: 145 TGISMGGGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKV 204

[Close]

BLAST of Bhi03G001975 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-18
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+   VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 316 MAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 375

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++GG                 T  N F  R++  +PRIINC  D+QPKWK  +++ F
Sbjct: 376 TGISMGGFIFPILAWAYEVIPTLSTPPNFFVTRISNEVPRIINCATDTQPKWKDLKQKVF 435

[Close]

BLAST of Bhi03G001975 vs. NCBI nr
Match: TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 144

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R+   +PRIIN  AD+QPKWK  +++ F
Sbjct: 145 TGISIWGFIFLILAWAYEVNPTLSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVF 204

[Close]

BLAST of Bhi03G001975 vs. NCBI nr
Match: KAA0051382.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 144

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R+   +PRIIN  AD+QPKWK  +++ F
Sbjct: 145 TGISIWGFIFLILAWAYEVNPTLSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVF 204

[Close]

BLAST of Bhi03G001975 vs. NCBI nr
Match: TYK21258.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LE F +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+ A+ +K  
Sbjct: 98  MAKLYFLEIFLIPKQECLSVDWDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQ 157

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R++  +PRIIN  AD QPKWK  +++ F
Sbjct: 158 TGISIVGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVF 217

[Close]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL
Match: A0A5D3CEX9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00200 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.0e-19
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+ A+ +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQ 144

Query: 61  IELTLGG------------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEG 104
             +++GG                  T  N FA R++  +PRIIN  AD+QPKWK  +++ 
Sbjct: 145 TGISMGGGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKV 204

[Close]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+   VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 316 MAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 375

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++GG                 T  N F  R++  +PRIINC  D+QPKWK  +++ F
Sbjct: 376 TGISMGGFIFPILAWAYEVIPTLSTPPNFFVTRISNEVPRIINCATDTQPKWKDLKQKVF 435

[Close]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL
Match: A0A5A7U6E1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001210 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-17
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 144

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R+   +PRIIN  AD+QPKWK  +++ F
Sbjct: 145 TGISIWGFIFLILAWAYEVNPTLSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVF 204

[Close]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL
Match: A0A5D3DKA6 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00030 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-17
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LESF +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+  + +K  
Sbjct: 85  MAKLYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQ 144

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R+   +PRIIN  AD+QPKWK  +++ F
Sbjct: 145 TGISIWGFIFLILAWAYEVNPTLSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVF 204

[Close]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL
Match: A0A5D3DCN3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00080 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAQLYILESFFLPKQDTVYVDINRILMVDDEELFRNYLWGRLAFDLLVDVMHNAIYAKCA 60
           MA+LY LE F +PKQ+ + VD + I+MVDD+E+F  Y WGR+AF+LLVD M+ A+ +K  
Sbjct: 98  MAKLYFLEIFLIPKQECLSVDWDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQ 157

Query: 61  IELTLGG-----------------TGQNCFARRVNMNLPRIINCVADSQPKWKAHEEEGF 104
             +++ G                 T  N FA R++  +PRIIN  AD QPKWK  +++ F
Sbjct: 158 TGISIVGFIFPILAWAYEVIPTLSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVF 217

The following BLAST results are available for this feature:

BLAST of Bhi03G001975 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi03G001975 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi03G001975 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09852.1	1.4e-18	43.80	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0047596.1	3.2e-18	42.50	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK23840.1	1.4e-16	42.50	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0051382.1	1.4e-16	42.50	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK21258.1	2.3e-16	42.50	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of Bhi03G001975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEX9	7.0e-19	43.80	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G002...	[more]
A0A5A7U047	1.6e-18	42.50	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00...	[more]
A0A5A7U6E1	6.5e-17	42.50	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001...	[more]
A0A5D3DKA6	6.5e-17	42.50	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00...	[more]
A0A5D3DCN3	1.1e-16	42.50	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001975	Bhi03M001975	mRNA