Bhi03G001906 (gene) Wax gourd (B227) v1

Overview
NameBhi03G001906
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr3: 52513871 .. 52514176 (-)
RNA-Seq ExpressionBhi03G001906
SyntenyBhi03G001906
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGATTAATTGGAGATTAGGAGCCTGTGTTCTTGTAATACTCTTAGGGCTTCATTTCTCCGCTGCCCAAATAGCCGATGAAGAGAAGGAATTTCGGCAGTTCGATTCCGAAATTTTTCCGAGAGACGTACCGATTCCTCCGTCTGGACCGAGTCAAAGGAAATCGGATCATCCTTCTCCTCCGTGCTTTTCTGGACGACGGTGGTCTAATTCTAGAAAAGGCGTACGGATTCCTCCGTCTGAACCCAATCCGAGGACCTCCGACTCGTTCTCGCCTCCGCCGCCGCCGCGAAATGCTTAG

mRNA sequence

ATGGCGTCGATTAATTGGAGATTAGGAGCCTGTGTTCTTGTAATACTCTTAGGGCTTCATTTCTCCGCTGCCCAAATAGCCGATGAAGAGAAGGAATTTCGGCAGTTCGATTCCGAAATTTTTCCGAGAGACGTACCGATTCCTCCGTCTGGACCGAGTCAAAGGAAATCGGATCATCCTTCTCCTCCGTGCTTTTCTGGACGACGGTGGTCTAATTCTAGAAAAGGCGTACGGATTCCTCCGTCTGAACCCAATCCGAGGACCTCCGACTCGTTCTCGCCTCCGCCGCCGCCGCGAAATGCTTAG

Coding sequence (CDS)

ATGGCGTCGATTAATTGGAGATTAGGAGCCTGTGTTCTTGTAATACTCTTAGGGCTTCATTTCTCCGCTGCCCAAATAGCCGATGAAGAGAAGGAATTTCGGCAGTTCGATTCCGAAATTTTTCCGAGAGACGTACCGATTCCTCCGTCTGGACCGAGTCAAAGGAAATCGGATCATCCTTCTCCTCCGTGCTTTTCTGGACGACGGTGGTCTAATTCTAGAAAAGGCGTACGGATTCCTCCGTCTGAACCCAATCCGAGGACCTCCGACTCGTTCTCGCCTCCGCCGCCGCCGCGAAATGCTTAG

Protein sequence

MASINWRLGACVLVILLGLHFSAAQIADEEKEFRQFDSEIFPRDVPIPPSGPSQRKSDHPSPPCFSGRRWSNSRKGVRIPPSEPNPRTSDSFSPPPPPRNA
Homology
BLAST of Bhi03G001906 vs. NCBI nr
Match: OMO59199.1 (hypothetical protein CCACVL1_25007 [Corchorus capsularis])

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-04
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 7  RLGACVLVILLGLHFSAAQIADEEKEFRQFDSEIFPRDVPIPPSGPSQRKS-DHPSPPCF 66
          +L   ++++L+ + +SA  I       +  + E+ P+ VPIPPSGPS R S D P PP  
Sbjct: 4  KLSMMLMLVLVFVGYSATLINARSLSSQLLNFEMLPKGVPIPPSGPSTRTSADVPPPPSL 63

Query: 67 SGRRWSNSRKGVRIPPSEPNPRTSDSFSPPP 97
          +   +    KGV IPPS P+ RTS    PPP
Sbjct: 64 N---FQMLPKGVPIPPSGPSTRTSADVPPPP 91

BLAST of Bhi03G001906 vs. ExPASy TrEMBL
Match: A0A1R3GMC3 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25007 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.5e-04
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 7  RLGACVLVILLGLHFSAAQIADEEKEFRQFDSEIFPRDVPIPPSGPSQRKS-DHPSPPCF 66
          +L   ++++L+ + +SA  I       +  + E+ P+ VPIPPSGPS R S D P PP  
Sbjct: 4  KLSMMLMLVLVFVGYSATLINARSLSSQLLNFEMLPKGVPIPPSGPSTRTSADVPPPPSL 63

Query: 67 SGRRWSNSRKGVRIPPSEPNPRTSDSFSPPP 97
          +   +    KGV IPPS P+ RTS    PPP
Sbjct: 64 N---FQMLPKGVPIPPSGPSTRTSADVPPPP 91

BLAST of Bhi03G001906 vs. ExPASy TrEMBL
Match: A0A061FHV4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 12 VLVILLGLHFSAAQIADEEKEFRQFDSEIFPRDVPIPPSGPSQRKS-DHPSPPCFSGRRW 71
          V ++ LG + S +  A    E  Q +  +FP+ VPIPPSGPS+R S   P PP      +
Sbjct: 11 VALVFLG-YVSMSGNARAVPEASQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIRLLNF 70

Query: 72 SNSRKGVRIPPSEPNPRTSDSFSPPPP 98
              KGV IPPS P+ RTS S  PPPP
Sbjct: 71 GMFPKGVPIPPSGPSRRTSASPPPPPP 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
OMO59199.19.3e-0439.56hypothetical protein CCACVL1_25007 [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
A0A1R3GMC34.5e-0439.56Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25007 PE=4 ... [more]
A0A061FHV45.9e-0444.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001906Bhi03M001906mRNA