Bhi03G001747 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001747
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr3: 48190454 .. 48190765 (-)
RNA-Seq Expression	Bhi03G001747
Synteny	Bhi03G001747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTCAGACGAAAAGGATCACCTAGTCAAAATTCTCCCTCTAATCTCAATCAAAATCAACAGAGAGGGTTTTCTCCTAACTATCGTGGCCGTGGAAGAGGTCGTGGGCGTGGTGGATATCCAAATCGCCTGGTTTGTGAAGTTTGCACCAAGGTGGGACATAAAGCAGACGTGTGCTATATGCGTTTTCTCAAGGACTTCAACAATCCAAATCAAACTCATCTGTTGAATTCTCTGACCCTTCGCCTACGGTTAATAACAGTCAAACATTTTGTCTGCCTCAAAACACATTTACGGCCAACTCTGTGA

mRNA sequence

ATGCAACTCAGACGAAAAGGATCACCTAGTCAAAATTCTCCCTCTAATCTCAATCAAAATCAACAGAGAGGGTTTTCTCCTAACTATCGTGGCCGTGGAAGAGGTCGTGGGCGTGGTGGATATCCAAATCGCCTGGTTTGTGAAGTTTGCACCAAGGTGGGACATAAAGCAGACGTGTGCTATATGCGTTTTCTCAAGGACTTCAACAATCCAAATCAAACTCATCTGTTGAATTCTCTGACCCTTCGCCTACGGTTAATAACAGTCAAACATTTTGTCTGCCTCAAAACACATTTACGGCCAACTCTGTGA

Coding sequence (CDS)

ATGCAACTCAGACGAAAAGGATCACCTAGTCAAAATTCTCCCTCTAATCTCAATCAAAATCAACAGAGAGGGTTTTCTCCTAACTATCGTGGCCGTGGAAGAGGTCGTGGGCGTGGTGGATATCCAAATCGCCTGGTTTGTGAAGTTTGCACCAAGGTGGGACATAAAGCAGACGTGTGCTATATGCGTTTTCTCAAGGACTTCAACAATCCAAATCAAACTCATCTGTTGAATTCTCTGACCCTTCGCCTACGGTTAATAACAGTCAAACATTTTGTCTGCCTCAAAACACATTTACGGCCAACTCTGTGA

Protein sequence

MQLRRKGSPSQNSPSNLNQNQQRGFSPNYRGRGRGRGRGGYPNRLVCEVCTKVGHKADVCYMRFLKDFNNPNQTHLLNSLTLRLRLITVKHFVCLKTHLRPTL

Homology

[Close]

BLAST of Bhi03G001747 vs. NCBI nr
Match: XP_031282138.1 (uncharacterized protein LOC116140680 [Pistacia vera])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 10  SQNSPSNLNQNQQRGFSPNYRGRGRGRGRGGYPNRLVCEVCTKVGHKADVCYMRFLKDFN 69
           SQ  P+  NQ     F+ N   RGRGRGRG +  +L+C+VC K+GH A  CY RF +DF 
Sbjct: 86  SQFMPTGFNQ-----FNNNMM-RGRGRGRGYFKPKLICQVCGKIGHSALQCYYRFDQDFQ 145

Query: 70  NPNQTHLLNSLT 82
             N  H + + T
Sbjct: 146 GFNYNHSVQAST 151

[Close]

BLAST of Bhi03G001747 vs. ExPASy TrEMBL
Match: A0A2N9G7F1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26459 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 10  SQNSPSNLNQNQQRGFSPNYRGRGRGRGRGGYPN--RLVCEVCTKVGHKADVCYMRF 65
           S NS  + + NQQR      + RGRGRG+G Y N  RLVC+VCTK GH A +CY RF
Sbjct: 132 SSNSGRDFSSNQQR------QNRGRGRGKGNYNNFPRLVCQVCTKSGHTALICYHRF 182

The following BLAST results are available for this feature:

BLAST of Bhi03G001747 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi03G001747 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi03G001747 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031282138.1	1.1e-04	44.44	uncharacterized protein LOC116140680 [Pistacia vera]	[more]

BLAST of Bhi03G001747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9G7F1	2.1e-04	54.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26459 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001747	Bhi03M001747	mRNA