Bhi03G001646 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001646
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RING-CH-type domain-containing protein
Location	chr3: 45201711 .. 45201968 (-)
RNA-Seq Expression	Bhi03G001646
Synteny	Bhi03G001646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTTGGAGACGGCCGGAGCTGATTTGGAAAAAGGGTGGCGGCAGACGGCGGCGGAGAGGGGAAGTGGGGTTGGTGAAGAAGTGAAGGTGAATAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTAGTGAGCAATAGCAATGAGTTTGGAGTTGGAATCGAATTGGGTTGTTGTTGTAAGAATGATTTGAGTACTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGA

mRNA sequence

ATGGCAGCTTTGGAGACGGCCGGAGCTGATTTGGAAAAAGGGTGGCGGCAGACGGCGGCGGAGAGGGGAAGTGGGGTTGGTGAAGAAGTGAAGGTGAATAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTAGTGAGCAATAGCAATGAGTTTGGAGTTGGAATCGAATTGGGTTGTTGTTGTAAGAATGATTTGAGTACTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGA

Coding sequence (CDS)

ATGGCAGCTTTGGAGACGGCCGGAGCTGATTTGGAAAAAGGGTGGCGGCAGACGGCGGCGGAGAGGGGAAGTGGGGTTGGTGAAGAAGTGAAGGTGAATAATTTGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTAGTGAGCAATAGCAATGAGTTTGGAGTTGGAATCGAATTGGGTTGTTGTTGTAAGAATGATTTGAGTACTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGTGA

Protein sequence

MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK

Homology

[Close]

BLAST of Bhi03G001646 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 5.0e-17
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 30  VKVNNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK 86
           V ++  ERDCRICH+ L + + E GV IELGC CK DL+ AHKHCAE WFKI+GNK
Sbjct: 70  VHLSQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNK 125

[Close]

BLAST of Bhi03G001646 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 36  ERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK 86
           E+DCRICHLGL S+ +E G  + LGC CK+DL   HK CA+ WFKI+GNK
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

[Close]

BLAST of Bhi03G001646 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 36  ERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK 86
           E+DCRICHLGL S+ +E G  + LGC CK+DL   HK CA+ WFKI+GNK
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

[Close]

BLAST of Bhi03G001646 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 36  ERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK 86
           E+DCRICHLG+ ++    G  IELGC CK+DL+ AH+ CAE WFKI+G+K
Sbjct: 81  EKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDK 127

[Close]

BLAST of Bhi03G001646 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 24  SGVGEEVKVNNLERDCRICHLGLVSNSNEFGVG-------IELGCCCKNDLSTAHKHCAE 83
           SGVGE +        CRICH G   +    G         IE+GC CKN+L  AH HCAE
Sbjct: 95  SGVGERI--------CRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAE 154

Query: 84  AWFKIRGN 85
           AWFK+RGN
Sbjct: 155 AWFKLRGN 154

[Close]

BLAST of Bhi03G001646 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60
          MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG
Sbjct: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60

Query: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 86
          CCCKNDLSTAHKHCAEAWFKIRGNK
Sbjct: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 85

[Close]

BLAST of Bhi03G001646 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60
          MAALETAG DLE+G R     RG+  G EVKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1  MAALETAGVDLEEGGRGGDGGRGAEAG-EVKVHS-ERDCRICHLGLESNSSECGTAIELG 60

Query: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 86
          C CKNDL+ AHKHCAEAWFKIRGNK
Sbjct: 61 CSCKNDLAAAHKHCAEAWFKIRGNK 83

[Close]

BLAST of Bhi03G001646 vs. NCBI nr
Match: XP_023517921.1 (uncharacterized protein LOC111781512 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 61/85 (71.76%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60
          MAALETAG DLE+G R     R +  G EVKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1  MAALETAGVDLEEGGRGGHGGRRAEAG-EVKVHS-ERDCRICHLGLESNSSECGTAIELG 60

Query: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 86
          C CKNDL+ AHKHCAEAWFKIRGNK
Sbjct: 61 CSCKNDLAAAHKHCAEAWFKIRGNK 83

[Close]

BLAST of Bhi03G001646 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 61/85 (71.76%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60
          MAALETAG DLE+G R     R +  G EVKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1  MAALETAGVDLEEGGRGGDGGRRAEAG-EVKVHS-ERDCRICHLGLESNSSECGTAIELG 60

Query: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 86
          C CKNDL+ AHKHCAEAWFKIRGNK
Sbjct: 61 CSCKNDLAAAHKHCAEAWFKIRGNK 83

[Close]

BLAST of Bhi03G001646 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 61/85 (71.76%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60
          MAALETAG DLE+G R     R +  G EVKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1  MAALETAGVDLEEGGRGGHGGRRAEAG-EVKVHS-ERDCRICHLGLESNSSECGTAIELG 60

Query: 61 CCCKNDLSTAHKHCAEAWFKIRGNK 86
          C CKNDL+ AHKHCAEAWFKIRGNK
Sbjct: 61 CSCKNDLAAAHKHCAEAWFKIRGNK 83

[Close]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MAALETAG-ADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIEL 60
          +AA++T G ADLE+G   +  ER        +    ERDCRICHLGL S+S+E G+GIEL
Sbjct: 18 IAAVDTPGSADLEQGRCSSGGER--------RREAAERDCRICHLGLESSSDECGIGIEL 77

Query: 61 GCCCKNDLSTAHKHCAEAWFKIRGNK 86
          GC CKNDL  AHKHCAEAWFKIRGNK
Sbjct: 78 GCSCKNDLGAAHKHCAEAWFKIRGNK 95

[Close]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL
Match: A0A1J7H3Q9 (RING-CH-type domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14466 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.8e-18
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 21  ERGSGVGEEVKV---NNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEA 80
           E  SGV  E+KV   N +ERDCRICH+GL S+S+E GV IELGCCCK+DL+ AHKHCAE 
Sbjct: 87  EIASGV-PEIKVHLGNKVERDCRICHMGLESDSHECGVPIELGCCCKDDLAAAHKHCAET 146

Query: 81  WFKIRGNK 86
           WFKI+GN+
Sbjct: 147 WFKIKGNR 153

[Close]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL
Match: A0A067JWY5 (RING-CH-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_25084 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.8e-18
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 21  ERGSGVGE-EVKVNNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWF 80
           E G+GV E +V++  +ERDCRICHLGL SNS+E G  IELGC CK+DL+ AHK CAEAWF
Sbjct: 86  ENGNGVAEMKVQLAKVERDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKQCAEAWF 145

Query: 81  KIRGNK 86
           KI+GNK
Sbjct: 146 KIKGNK 151

[Close]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL
Match: A0A6A3CP99 (Laccase-8-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002942pilonHSYRG00005 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 24  SGVGE-EVKVNNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIR 83
           SG  E +V +   E++CRICHLGL SNS+E GV IELGC CK+DL+TAHKHCAEAWFKIR
Sbjct: 88  SGANEIKVHLAKAEKNCRICHLGLESNSHESGVAIELGCSCKDDLATAHKHCAEAWFKIR 147

Query: 84  GNK 86
           GNK
Sbjct: 148 GNK 150

[Close]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL
Match: A0A6A2X7A4 (Kinase protein with tetratricopeptide repeat domain OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113123pilonHSYRG00089 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 27  GEEVKVNNLERDCRICHLGLVSNSNEFGVGIELGCCCKNDLSTAHKHCAEAWFKIRGNK 86
           G +V +  +E+DCRICHLGL SNS+E GV IELGC CK+DL+ AHKHCAEAWFKIRGNK
Sbjct: 84  GIKVHLAEVEKDCRICHLGLESNSHESGVPIELGCSCKDDLAAAHKHCAEAWFKIRGNK 142

The following BLAST results are available for this feature:

BLAST of Bhi03G001646 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	5.0e-17	64.29	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.4e-14	62.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.4e-14	62.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.0e-13	60.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	2.4e-11	48.53	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Bhi03G001646 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi03G001646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883458.1	1.1e-42	100.00	uncharacterized protein LOC120074413 [Benincasa hispida]	[more]
KAG7027374.1	1.8e-24	72.94	hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023517921.1	1.5e-23	71.76	uncharacterized protein LOC111781512 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6595366.1	1.5e-23	71.76	hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517920.1	1.5e-23	71.76	uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Bhi03G001646 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBE4	1.4e-19	61.63	uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1J7H3Q9	7.8e-18	67.65	RING-CH-type domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tanji...	[more]
A0A067JWY5	7.8e-18	68.18	RING-CH-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_2508...	[more]
A0A6A3CP99	1.0e-17	71.43	Laccase-8-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002942pilonHSYRG0000...	[more]
A0A6A2X7A4	1.0e-17	72.88	Kinase protein with tetratricopeptide repeat domain OS=Hibiscus syriacus OX=1063...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 38..85 e-value: 8.7E-5 score: 24.9
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 39..81 e-value: 1.9E-5 score: 24.7
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 31..85 score: 12.456816
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 24..85 e-value: 3.1E-9 score: 38.3
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 24..85
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 24..85
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 36..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001646	Bhi03M001646	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding