Bhi03G001451 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001451
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Location	chr3: 39435520 .. 39436409 (+)
RNA-Seq Expression	Bhi03G001451
Synteny	Bhi03G001451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAGGTTAAGTTCAAAGCTTATTCAGTACACTCAAAGTAGATCTCTCCTTCCAACTTCCAACTTCAAACAAAGAAAAAAGAAAAAAGAAAAAAAAAAACTTCTCTTTTTCTTTCTCTTTCTTCTTCTCTTTGAATATATAAATATAAATGATGAAGAGAAATGGTAGGGTTTGTGGGGTTTGTATTATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGGTGGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCGGAACTCCGCCGCCGGTTCATGTGAAGACCGCCGGTTCAAGTCAACAATTTAAGACCAACAAAGCAGAATTACCTCAAGATTTTCGCCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGAAAATCTCTTCTTATGTTATCTTGCATTCCATTATTTCTCTCTTTAATTTCTCTCTATCTCTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTTCTATTTTCTTGTAAAGTTAGTTTATGGCCTAACTAAAGATCTTTCATAGACCACAAAAAATTATTGTGTGCTCAAATGGTATTTCTGTTGTTGTTTTTCCTTCTTCAATTTGTTTGTAGTAATCTAATAATTCATTATGCCTCCATTTGGGGGTCGTTTTCTTGATTAACAACGAACCCAATAAAAAGAAAAACCCAAATTTGATAATAAAGCTTGAACCATTACGAGAATCAAAAGCTTAAATAGTAGGTTTTATGATAAATGTAAGCCGTCCAATATATTCTTTAACACCGGCCATTCTTTTATATGTTGACTTAATTTTGATATTCATGTGAATTATTGTGATGAAATGGG

mRNA sequence

TAGAAGGTTAAGTTCAAAGCTTATTCAGTACACTCAAAGTAGATCTCTCCTTCCAACTTCCAACTTCAAACAAAGAAAAAAGAAAAAAGAAAAAAAAAAACTTCTCTTTTTCTTTCTCTTTCTTCTTCTCTTTGAATATATAAATATAAATGATGAAGAGAAATGGTAGGGTTTGTGGGGTTTGTATTATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGGTGGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCGGAACTCCGCCGCCGGTTCATGTGAAGACCGCCGGTTCAAGTCAACAATTTAAGACCAACAAAGCAGAATTACCTCAAGATTTTCGCCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGAAAATCTCTTCTTATGTTATCTTGCATTCCATTATTTCTCTCTTTAATTTCTCTCTATCTCTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTTCTATTTTCTTGTAAAGTTAGTTTATGGCCTAACTAAAGATCTTTCATAGACCACAAAAAATTATTGTGTGCTCAAATGGTATTTCTGTTGTTGTTTTTCCTTCTTCAATTTGTTTGTAGTAATCTAATAATTCATTATGCCTCCATTTGGGGGTCGTTTTCTTGATTAACAACGAACCCAATAAAAAGAAAAACCCAAATTTGATAATAAAGCTTGAACCATTACGAGAATCAAAAGCTTAAATAGTAGGTTTTATGATAAATGTAAGCCGTCCAATATATTCTTTAACACCGGCCATTCTTTTATATGTTGACTTAATTTTGATATTCATGTGAATTATTGTGATGAAATGGG

Coding sequence (CDS)

ATGATGAAGAGAAATGGTAGGGTTTGTGGGGTTTGTATTATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGGTGGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGGTCGGAACTCCGCCGCCGGTTCATGTGAAGACCGCCGGTTCAAGTCAACAATTTAAGACCAACAAAGCAGAATTACCTCAAGATTTTCGCCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

Protein sequence

MMKRNGRVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGSSQQFKTNKAELPQDFRPTSPGHSPGVGHHINN

Homology

[Close]

BLAST of Bhi03G001451 vs. ExPASy Swiss-Prot
Match: P0DN97 (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 12 CIMIIVLVLCLSHEVVYVECRHLKATRCK-KCSKLVGTPPPVHVKTAGSSQQFKTNKAEL 71
          CI ++++ + +SHE++  E RHL+  R   K S L        ++T G S +   +K E 
Sbjct: 10 CISLLIIAILVSHEIIPTEARHLRTHRKSIKNSTLTVHEGAGGLRTGGGSVKTDISKEEH 69

Query: 72 PQD-FRPTSPGHSPGVGH 88
            D FRPT+PG+SPG+GH
Sbjct: 70 GVDEFRPTTPGNSPGIGH 87

[Close]

BLAST of Bhi03G001451 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MMKRNGRVCGVCIMIIVLVLCLSHEVVYVECRHLKATR-CKKCSKLVGT---PPPVHVKT 60
          MMKRNGR CGVCI IIVLVLCLS+E VYVECRHLK++R CKKCSK +GT   PPP H+K+
Sbjct: 6  MMKRNGRACGVCI-IIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKS 65

Query: 61 AGSSQQFKTNKAELPQDFRPTSPGHSPGVGHHINN 92
          AG+ QQF T KAELPQDFRPTSPGHSPGVGHHINN
Sbjct: 66 AGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of Bhi03G001451 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 7.0e-27
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 2  MKRNGRVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTP---------PPV 61
          MK   R+ GVC+ I+ L+LCLSHEVVYVECRHLK++RCKKC+K +  P          P 
Sbjct: 1  MKTTQRLSGVCVFILFLILCLSHEVVYVECRHLKSSRCKKCTKFINPPAVNLGGKKADPG 60

Query: 62 HVKTAGSSQQFKTNKAELPQDFRPTSPGHSPGVGHHINN 92
           V  AG+ Q+FKT+KAE PQDFRPTSPGHSPGVGHHINN
Sbjct: 61 DVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of Bhi03G001451 vs. NCBI nr
Match: EOX91365.1 (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-10
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 7  RVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGS-----SQ 66
          R+  VC++++VL+LC    V  VE RHL++  CKKCS+       + +   GS     S 
Sbjct: 5  RLKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSG 64

Query: 67 QFKTNKAELPQDFRPTSPGHSPGVGHHINN 92
          Q +T+KAE   DFRPTSPGHSPGVGH I N
Sbjct: 65 QEQTSKAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of Bhi03G001451 vs. NCBI nr
Match: OMP02045.1 (hypothetical protein COLO4_11385 [Corchorus olitorius])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 7  RVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGSSQ---QF 66
          RV   C+ ++VL+LC    V+ VE RHL++  C+KCS+          K  G S    Q 
Sbjct: 5  RVLNACVFLLVLLLCHEIFVLNVEARHLRSKGCRKCSRQRHRNSLETAKIGGHSNVSGQE 64

Query: 67 KTNKAELPQDFRPTSPGHSPGVGHHINN 92
          ++NK +   DFRPT+PGHSPGVGH INN
Sbjct: 65 RSNKMDYVDDFRPTAPGHSPGVGHSINN 92

[Close]

BLAST of Bhi03G001451 vs. NCBI nr
Match: EXB55919.1 (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 24 HEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGSSQQFKTNKAELPQDFRPTSPGHSP 83
          HEV+ VE RHLK+TR ++CSK   +    H   A S  + +T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 84 GVGHHINN 92
          GVGH INN
Sbjct: 64 GVGHSINN 68

[Close]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 18 LVLCLSHEVVYVECRHLKATR-CKKCSKLVGT---PPPVHVKTAGSSQQFKTNKAELPQD 77
          +V  + +E VYVECRHLK++R CKKCSK +GT   PPP H+K+AG+ QQF T KAELPQD
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 78 FRPTSPGHSPGVGHHINN 92
          FRPTSPGHSPGVGHHINN
Sbjct: 61 FRPTSPGHSPGVGHHINN 78

[Close]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL
Match: A0A061DGB8 (tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao OX=3641 GN=TCM_000584 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 7  RVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGS-----SQ 66
          R+  VC++++VL+LC    V  VE RHL++  CKKCS+       + +   GS     S 
Sbjct: 5  RLKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSG 64

Query: 67 QFKTNKAELPQDFRPTSPGHSPGVGHHINN 92
          Q +T+KAE   DFRPTSPGHSPGVGH I N
Sbjct: 65 QEQTSKAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL
Match: A0A1R3K4N2 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11385 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 7  RVCGVCIMIIVLVLCLSHEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGSSQ---QF 66
          RV   C+ ++VL+LC    V+ VE RHL++  C+KCS+          K  G S    Q 
Sbjct: 5  RVLNACVFLLVLLLCHEIFVLNVEARHLRSKGCRKCSRQRHRNSLETAKIGGHSNVSGQE 64

Query: 67 KTNKAELPQDFRPTSPGHSPGVGHHINN 92
          ++NK +   DFRPT+PGHSPGVGH INN
Sbjct: 65 RSNKMDYVDDFRPTAPGHSPGVGHSINN 92

[Close]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL
Match: W9R6N3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.4e-10
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 24 HEVVYVECRHLKATRCKKCSKLVGTPPPVHVKTAGSSQQFKTNKAELPQDFRPTSPGHSP 83
          HEV+ VE RHLK+TR ++CSK   +    H   A S  + +T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 84 GVGHHINN 92
          GVGH INN
Sbjct: 64 GVGHSINN 68

[Close]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL
Match: A0A2C9URG2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 7  RVCGVCIMIIVLVLCLSHEVVYVECRHLKATR-CKKCSKLVGTPPPVHV-----KTAGSS 66
          RV G CI ++VL+LC  HEV+ VE RHLK  + CKKC +L      ++V     K  G  
Sbjct: 5  RVMGTCIFLLVLMLC--HEVLVVEGRHLKPHKLCKKCFRL-SDQNSLNVSEDTQKLLGG- 64

Query: 67 QQFKTNKAELPQDFRPTSPGHSPGVGHHINN 92
           Q KT+K +   DFRPT PGHSPGVGH INN
Sbjct: 65 -QEKTSKMDYVDDFRPTEPGHSPGVGHSINN 90

The following BLAST results are available for this feature:

BLAST of Bhi03G001451 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi03G001451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN97	1.2e-05	38.46	Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1	[more]

BLAST of Bhi03G001451 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647497.1	1.5e-32	80.00	hypothetical protein Csa_004238, partial [Cucumis sativus]	[more]
KAG6595044.1	7.0e-27	63.64	hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EOX91365.1	3.5e-10	47.78	TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]	[more]
OMP02045.1	1.3e-09	45.45	hypothetical protein COLO4_11385 [Corchorus olitorius]	[more]
EXB55919.1	1.7e-09	55.88	hypothetical protein L484_008270 [Morus notabilis]	[more]

BLAST of Bhi03G001451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB6	2.5e-22	71.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1	[more]
A0A061DGB8	1.7e-10	47.78	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ...	[more]
A0A1R3K4N2	6.4e-10	45.45	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11385 PE=3 SV=1	[more]
W9R6N3	8.4e-10	55.88	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1	[more]
A0A2C9URG2	1.9e-09	51.65	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..91
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 11..91
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001451	Bhi03M001451	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development