Bhi03G001432 (gene) Wax gourd (B227) v1

Overview
NameBhi03G001432
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLysM domain-containing protein
Locationchr3: 38788812 .. 38789874 (+)
RNA-Seq ExpressionBhi03G001432
SyntenyBhi03G001432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAACCAACCACACTTTGTTTCTACTCTTTCCAAAGGGGCTGACATATTCAACTACTTCTTTGAAGGAACCTTTCAACTTCCTTATCTCAATAAAACTTCACCCACTCCAACTACCTTTATAACCCTCCTTCAAAACCCTCTTCTTTTTATTCAATATTCTCTTATATATATATGTATATATTACCATTGAGAAACACTCAACTCCATAAAAATTTATAAGGTACTCAATTGTAATTTTGAGAGCAATAATGGGGATCAAGAGATCATCATCAGAGGTTAATTTGGTTATGGTATTGGTAATGAGCTGCTTATTATGGTGTTGCAAGTGCAGGGAAGACTACAACTTTATGGGTTGTGATGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAGTGTGGAGATCCATTCATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATATCATCAATGCCTTTCTCACTTAATTACTTCATCAAATTCAAATATATATTCTTGGCTTTGTTTCAACCCAATACCTTTCATTCTCTCTTTCATCATTGTCTTTTCCTTTTGTTTTGAACAAGTTTTCTTTCGATAATGGGTTGTGGGTGGGAGTGTATATATTATACTCATTGCAATTAATGCATCTTCTCCCCCTTTCTTTTGTTTCTTTCTTTCTTCCCATCTTCTTCTCTATCTTCTTGTTAATATGGGTAAAACAAGTGACTGCAACTATTTTTTTGCCTCCCATCCAGTAAAAAGATGACTATTAAAAAAAGAAATCAACTTGTCACATGATACTAGATAATTTGGGAAACGTGTCTGGGCTGCAAAAAGTGACTAGTTCACACCCAAGTAGTTAACTATCAATTTTTAGAATTGATAATGTTTTTTTTTTAATAATAGGGAAAATCGGAGAATCAAATCTTGACTTCGAAGTTGATTATACATGCTTTATCTACCAAGTTGTATGTTTAATTTGACGTATTAATATAATCTTAAATTAGAGTTTTGC

mRNA sequence

GTTGAACCAACCACACTTTGTTTCTACTCTTTCCAAAGGGGCTGACATATTCAACTACTTCTTTGAAGGAACCTTTCAACTTCCTTATCTCAATAAAACTTCACCCACTCCAACTACCTTTATAACCCTCCTTCAAAACCCTCTTCTTTTTATTCAATATTCTCTTATATATATATGTATATATTACCATTGAGAAACACTCAACTCCATAAAAATTTATAAGGTACTCAATTGTAATTTTGAGAGCAATAATGGGGATCAAGAGATCATCATCAGAGGTTAATTTGGTTATGGTATTGGTAATGAGCTGCTTATTATGGTGTTGCAAGTGCAGGGAAGACTACAACTTTATGGGTTGTGATGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAGTGTGGAGATCCATTCATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATATCATCAATGCCTTTCTCACTTAATTACTTCATCAAATTCAAATATATATTCTTGGCTTTGTTTCAACCCAATACCTTTCATTCTCTCTTTCATCATTGTCTTTTCCTTTTGTTTTGAACAAGTTTTCTTTCGATAATGGGTTGTGGGTGGGAGTGTATATATTATACTCATTGCAATTAATGCATCTTCTCCCCCTTTCTTTTGTTTCTTTCTTTCTTCCCATCTTCTTCTCTATCTTCTTGTTAATATGGGTAAAACAAGTGACTGCAACTATTTTTTTGCCTCCCATCCAGTAAAAAGATGACTATTAAAAAAAGAAATCAACTTGTCACATGATACTAGATAATTTGGGAAACGTGTCTGGGCTGCAAAAAGTGACTAGTTCACACCCAAGTAGTTAACTATCAATTTTTAGAATTGATAATGTTTTTTTTTTAATAATAGGGAAAATCGGAGAATCAAATCTTGACTTCGAAGTTGATTATACATGCTTTATCTACCAAGTTGTATGTTTAATTTGACGTATTAATATAATCTTAAATTAGAGTTTTGC

Coding sequence (CDS)

ATGGGGATCAAGAGATCATCATCAGAGGTTAATTTGGTTATGGTATTGGTAATGAGCTGCTTATTATGGTGTTGCAAGTGCAGGGAAGACTACAACTTTATGGGTTGTGATGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAGTGTGGAGATCCATTCATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATATCATCAATGCCTTTCTCACTTAA

Protein sequence

MGIKRSSSEVNLVMVLVMSCLLWCCKCREDYNFMGCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHIINAFLT
Homology
BLAST of Bhi03G001432 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.9e-19
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 36 CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 86
          C+EIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Sbjct: 48 CEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

BLAST of Bhi03G001432 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 36  CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 84
           CDEIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

BLAST of Bhi03G001432 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 36  CDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI 82
           C+E+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Sbjct: 59  CEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

BLAST of Bhi03G001432 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-29
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0

Query: 6   SSSEVNLVMVLVMSCLLWCCKCREDYNFMGCDEIYVVHEGETLQSISEKCGDPFIVEENP 65
           S ++V  +++LV+SCL+WCCK  E  ++  C+EIYVVHEGETLQSISEKCGDPFIVEENP
Sbjct: 14  SKAKVVSLVILVLSCLIWCCKSSELLHY-NCEEIYVVHEGETLQSISEKCGDPFIVEENP 73

Query: 66  HINDPDDVFPGLVIKITPFHHIIN--AFLT 94
           HINDPDDVFPGLVIKITPFHH      FLT
Sbjct: 74  HINDPDDVFPGLVIKITPFHHFFKYPTFLT 102

BLAST of Bhi03G001432 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 63/85 (74.12%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 4  KRSSSEVN-LVMVLVMS-CLLWCCKCREDYNFMGCDEIYVVHEGETLQSISEKCGDPFIV 63
          KRSSS    LV+VLV+S   +WCC  +E    MGCDEIYVV EGETLQSISEKCGDPFI 
Sbjct: 3  KRSSSRREFLVLVLVLSWWCVWCCNSQE--VLMGCDEIYVVREGETLQSISEKCGDPFIF 62

Query: 64 EENPHINDPDDVFPGLVIKITPFHH 87
          E NPHIND DDVFPGLVIKITPF H
Sbjct: 63 EHNPHINDVDDVFPGLVIKITPFLH 85

BLAST of Bhi03G001432 vs. NCBI nr
Match: XP_024955881.1 (uncharacterized protein LOC112498645 [Citrus sinensis] >KDO61094.1 hypothetical protein CISIN_1g044600mg [Citrus sinensis])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. NCBI nr
Match: GAY33192.1 (hypothetical protein CUMW_006070 [Citrus unshiu])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTELAEKIAWHCALFMAIMLVFSCCESSDGVGFMGQVTQPRNVNKPCDEIYVVKEG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. NCBI nr
Match: XP_006430247.1 (uncharacterized protein LOC18038156 [Citrus clementina] >ESR43487.1 hypothetical protein CICLE_v10013835mg [Citrus clementina])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTGLAEKIAWHCALFMAIMLVLSCCESSDGGGFMGQVTQPRNVNKPCDEIYVVREG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. ExPASy TrEMBL
Match: A0A067F127 (LysM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044600mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. ExPASy TrEMBL
Match: A0A2H5MZH7 (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_006070 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTELAEKIAWHCALFMAIMLVFSCCESSDGVGFMGQVTQPRNVNKPCDEIYVVKEG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. ExPASy TrEMBL
Match: V4SRY3 (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013835mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-20
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 5   RSSSEVNLVMVLVMSCLLW--------CCKCREDYNFMG-----------CDEIYVVHEG 64
           R+SS   L   +   C L+        CC+  +   FMG           CDEIYVV EG
Sbjct: 3   RASSTTGLAEKIAWHCALFMAIMLVLSCCESSDGGGFMGQVTQPRNVNKPCDEIYVVREG 62

Query: 65  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 85
           ETL +ISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Sbjct: 63  ETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101

BLAST of Bhi03G001432 vs. ExPASy TrEMBL
Match: A0A1S3V4C7 (uncharacterized protein LOC106771660 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771660 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 26  KCREDYNFMGCDEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 85
           +C  + N+  CDEIYVV EGETLQ+ISEKCGDP+IVEENPHI+DPDDVFPGLVIKI+PF+
Sbjct: 45  ECVSNSNYKVCDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKISPFN 104

Query: 86  H 87
           +
Sbjct: 105 Y 105

BLAST of Bhi03G001432 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 14  MVLVMSCLLWCCKCREDYNFM---------GCDEIYVVHEGETLQSISEKCGDPFIVEEN 73
           +VLV+  LL CC   E  + +          CDEIYVV EGETL +ISEKCGDPFIVEEN
Sbjct: 24  LVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVEEN 83

Query: 74  PHINDPDDVFPGLVIKITPF 85
           PHI+DPDDVFPGLVIKITPF
Sbjct: 84  PHIHDPDDVFPGLVIKITPF 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G62150.15.9e-1976.00peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.11.4e-1779.17peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.11.4e-1780.43peptidoglycan-binding LysM domain-containing protein [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647420.15.9e-2972.22hypothetical protein Csa_003059 [Cucumis sativus][more]
KAG6595189.12.2e-2374.12hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_024955881.11.1e-1955.56uncharacterized protein LOC112498645 [Citrus sinensis] >KDO61094.1 hypothetical ... [more]
GAY33192.11.1e-1955.56hypothetical protein CUMW_006070 [Citrus unshiu][more]
XP_006430247.11.4e-1955.56uncharacterized protein LOC18038156 [Citrus clementina] >ESR43487.1 hypothetical... [more]
Match NameE-valueIdentityDescription
A0A067F1275.4e-2055.56LysM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044600mg PE... [more]
A0A2H5MZH75.4e-2055.56LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_006070 PE=4 SV=... [more]
V4SRY37.0e-2055.56LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013835m... [more]
A0A1S3V4C71.2e-1975.41uncharacterized protein LOC106771660 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
A0A1U8AYB41.2e-1966.25uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 32..86
e-value: 7.2E-9
score: 37.1
IPR018392LysM domainPFAMPF01476LysMcoord: 40..82
e-value: 2.5E-5
score: 24.3
IPR018392LysM domainCDDcd00118LysMcoord: 39..81
e-value: 1.24287E-6
score: 39.7761
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 12..85
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 12..85
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001432Bhi03M001432mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane