Bhi03G001286 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G001286
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	chr3: 34873543 .. 34875512 (+)
RNA-Seq Expression	Bhi03G001286
Synteny	Bhi03G001286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGGCAAATCCCAACTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACTTAATATCTCTTCTCCCACCCCTTCCTCCACCCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTGCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCAATCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAGGAAATCTTGTCACTGTTTAATGTTCTGCAAACCCAATTGTTTGAGGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTATTTGATGATTATGCAGATTATCAACGTCCTCGTCGGGTTAAAATGAAGGATGATGCTGAAAATGAGTCTTTATGTTCTACTACAGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCTCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATATTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCGGTGCCAACGGATGCTAATCCTCTTTCTAATATGGCTTCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCTCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCGATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCATCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTCCAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGATTGAGTGGAATGGCCTGAATCGTCAACTAAAGCCCTAAATGTCCTCTTGTTGACCAAAGAGGTATGGGTGTAGAGACAATCAAAAGGTTTCCCTAGAAGCAGCACTCTTAAAGAATGTATAATAGTTCACTGATGACTATATATGCATGAGGCTAACCAATCTGCAGGTAGAAAGGTTACATTTCATACTTCCAAACTTACATGTTACTGATGATGTGTTTTGCATTCCCAAGGTCGACTTGAAACACACTAATCTATTCAACTTTTTTATTTGAAAAGCTATATTTCTCCTGACTTACTCATATTTCCTTTGTTTTTGAACGTGAGCTTTGATCAAACTCTCCTAGGGTACCGGATGCATTCTAAACCAGAGTAAACGATGTTCTAACTTTTATACCATGTCGTAGAGTGCGGTATATAAGCTTCTAGGAGTCGTTGAATCGATTATCGATTCAGTAATATGATTTAGGAGATTAATTAGATTGTTTTATGTTGGTGGCATCCACAGTTGAACATTGTGTAGTCCAGGTTTTGTTAGATTCTGTATGTTATGACTTGGTACTTGTGAAAGAGAATGTTTTGAAATGGAGATTATTGTGGTGGAAGCTTTTTCTCCTGTGTTGAAGAATATGAAGATTTAGGGGTTAAAAGAAATTGTCTGCTGGTATTTTCTATGACATCTTGGCTATTTTAGAAGATGCTTCAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGATGGGGATTTGTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGGCAAATCCCAACTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACTTAATATCTCTTCTCCCACCCCTTCCTCCACCCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTGCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCAATCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAGGAAATCTTGTCACTGTTTAATGTTCTGCAAACCCAATTGTTTGAGGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTATTTGATGATTATGCAGATTATCAACGTCCTCGTCGGGTTAAAATGAAGGATGATGCTGAAAATGAGTCTTTATGTTCTACTACAGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCTCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATATTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCGGTGCCAACGGATGCTAATCCTCTTTCTAATATGGCTTCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCTCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCGATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCATCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTCCAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAAAGATGCTTCAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGATGGGGATTTGTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGGCAAATCCCAACTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCAACTTAATATCTCTTCTCCCACCCCTTCCTCCACCCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTGCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCAATCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAGGAAATCTTGTCACTGTTTAATGTTCTGCAAACCCAATTGTTTGAGGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTATTTGATGATTATGCAGATTATCAACGTCCTCGTCGGGTTAAAATGAAGGATGATGCTGAAAATGAGTCTTTATGTTCTACTACAGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCTCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATATTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCGGTGCCAACGGATGCTAATCCTCTTTCTAATATGGCTTCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTTCCATCTGGTTGGAAACCTGGAATGCCTGTCGAATTACCTAGAGATTTACCAATGCCTCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCGATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCATCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTCCAATTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAAAGATGCTTCAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGATGGGGATTTGTGA

Protein sequence

MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLSNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSEVLKQLEDDGDL

Homology

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BLAST of Bhi03G001286 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 485.7 bits (1249), Expect = 3.6e-137
Identity = 274/431 (63.57%), Postives = 330/431 (76.57%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTP-----PKLPPSQQSHHQ--------------- 60
           MLQHQIVQSPARLGL  P SPS+QNPTP     P    S QS HQ               
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  --NQLNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
             +  + S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKMKDDAEN----ESLCSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K+++D E+     S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKA 300
           KL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LDIGLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPVPTDANPLSNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         ++++I  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNAHPGLHKPPEPIQVRHVQLDILDQDDDS 405
           PPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

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BLAST of Bhi03G001286 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 5.1e-136
Identity = 274/431 (63.57%), Postives = 330/431 (76.57%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTP-----PKLPPSQQSHHQ--------------- 60
           MLQHQIVQSPARLGL  P SPS+QNPTP     P    S QS HQ               
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  --NQLNISSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
             +  + S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKMKDDAEN----ESLCSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K+++D E+     S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKA 300
           KL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LDIGLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPVPTDANPLSNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         ++++I  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNAHPGLHKPPEPIQVRHVQLDILDQDDDS 405
           PPGWKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

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BLAST of Bhi03G001286 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 767.3 bits (1980), Expect = 6.7e-218
Identity = 400/404 (99.01%), Postives = 400/404 (99.01%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP
Sbjct: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 404

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BLAST of Bhi03G001286 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 728.4 bits (1879), Expect = 3.5e-206
Identity = 382/404 (94.55%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRRVK +  AENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAPV  DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NMA+IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 404

[Close]

BLAST of Bhi03G001286 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 722.2 bits (1863), Expect = 2.5e-204
Identity = 377/405 (93.09%), Postives = 390/405 (96.30%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVK KDD EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LD+GLPKAVESTEKTIEPMIEPPAPVPTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
            QLRPNA PGLHKPPEPIQVR VQLDILDQDDDSSDYT D   SE
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSE 405

[Close]

BLAST of Bhi03G001286 vs. NCBI nr
Match: XP_004142109.1 (mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN54188.1 hypothetical protein Csa_017920 [Cucumis sativus])

HSP 1 Score: 714.9 bits (1844), Expect = 4.0e-202
Identity = 378/404 (93.56%), Postives = 385/404 (95.30%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRR K + DAENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAPV  DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
             A+IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 401

[Close]

BLAST of Bhi03G001286 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 697.6 bits (1799), Expect = 6.6e-197
Identity = 367/405 (90.62%), Postives = 383/405 (94.57%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVK  DD ENESLC STTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY+FA+LD+GLPK+VESTEKTIEPMIEPPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 SNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           PQLR NA PGLH+P EPIQVRHVQLDILDQDDDSSDY  +   SE
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSE 404

[Close]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.7e-206
Identity = 382/404 (94.55%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRRVK +  AENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAPV  DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NMA+IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 404

[Close]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.7e-206
Identity = 382/404 (94.55%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRRVK +  AENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAPV  DANPLS
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           NMA+IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 404

[Close]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 722.2 bits (1863), Expect = 1.2e-204
Identity = 377/405 (93.09%), Postives = 390/405 (96.30%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVK KDD EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQ+EQMRASQLYNFA+LD+GLPKAVESTEKTIEPMIEPPAPVPTDANPL+
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
           N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 -QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
            QLRPNA PGLHKPPEPIQVR VQLDILDQDDDSSDYT D   SE
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSE 405

[Close]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.9e-202
Identity = 378/404 (93.56%), Postives = 385/404 (95.30%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYQRPRR K + DAENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300
           APLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAPV  DANPL 
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANPL- 300

Query: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360
             A+IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEP
Sbjct: 301 --AAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           QLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYT D   SE
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSE 401

[Close]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.3e-195
Identity = 365/405 (90.12%), Postives = 380/405 (93.83%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKMKDDAENESLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVK  DD ENESLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LD+GLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 SNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTKDASDSE 405
           PQLR NA PGLH+P EPIQVRHVQLDILDQDDDSSDY  +   SE
Sbjct: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSE 404

The following BLAST results are available for this feature:

BLAST of Bhi03G001286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	3.6e-137	63.57	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Bhi03G001286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	5.1e-136	63.57	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi03G001286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882754.1	6.7e-218	99.01	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_008449288.1	3.5e-206	94.55	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_022143910.1	2.5e-204	93.09	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_004142109.1	4.0e-202	93.56	mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN5418...	[more]
XP_023518528.1	6.6e-197	90.62	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]

BLAST of Bhi03G001286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZC1	1.7e-206	94.55	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	1.7e-206	94.55	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1CQ51	1.2e-204	93.09	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A0A0KXB7	1.9e-202	93.56	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
A0A6J1HH73	1.3e-195	90.12	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..264 e-value: 3.2E-7 score: 30.2
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 50..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M001286	Bhi03M001286	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity