Bhi03G001203 (gene) Wax gourd (B227) v1

Overview
NameBhi03G001203
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionEukaryotic translation initiation factor 3 subunit B
Locationchr3: 33053333 .. 33054529 (+)
RNA-Seq ExpressionBhi03G001203
SyntenyBhi03G001203
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATAATGAAACAGTAACCATCTTTGAAGAAGATGTTAATCCTGTTGATGATTTGAAAAAACCCGAAGAAACTCGCGAGGAGGAACCATTGGTTGTTCGCCTTAAGGTATGAAATTTCAATAGAGAAGATCATTGAAATATTTATGATACCTCTTTTCTTCTTGAAAGGATTTTCACCATAGGAGTGCAATATGTTTCTATTCCTTTCAGGCACGAATGCAAGAGATGAAGGAAAAGGATCTCAAGTGTCTAGGAAATGTAGATACGAATTCCCACATGTGTAAAGTTTGTTTCGAATTGCCAACTGCAACAATTCTTCTTCCATATCAACATTTTTGTTGTAAGTTTCCTTAAACCTTCTAAAAATTCCAACATTTTGTTTCCTGGTTCTAACTTTTGGGCTTTTGAAACTGCAGTATGTAAATCTTGTTCACTTGCCTGTTCAGAGTGTCCAATCTGTCGTACAAAGATTGTAGATAGACTCTTTACATTTATTTCTTGACATGCTGTTATATGGCCTTTTCCTACAAGGTAATTCATACTTTCCTTTCTCGTATTCCATCAACCACAACCTCAATCTGCATTGCCTGTCATGATCCGAAACCTTGTTCTTCACACTTGTTATGACCGCTTTACTGTACCATTGAACGTGCGAAAACCTGTTCCACTTCAGTTTTTATCATGTATTGACAGGAAATTCAATATTTCAACTGTCGGCAATCTGAGGACGAGATACTTTTATTAGTTTTGCTTATATGCAACTGTACAAAAGGTACATAATTATTTATTGGGTTCAATTCTCTGAGAGATGTAAAATAATACCTGATGAGAAAGATCATATTAAAGTAGTTAAGAAACTTCAATTTTTCTACATGGAAAGCTTTTTTGCTTAGTTTAGTAGTTTCACTTAAACTACCAATTTAAATATTGCAACTACTTCGCTTTTACTCGGCTGAATATTTTCCATGGGGAAAAAGAACCATGGGAGAATGTCATTTTATAGATCAAATTGTGCTGTTGTGGAAGTATGATGCTAATTACTATTTACTTCTGAACATTTCAGGAGAATCTTCAACAATGGCTAACTGCTGAAAAAGCACAGGATCGATTTGTTATTCGATCTGGTTCCGATAATGAGGTTTTCTGGAATGATGCTAGACATTTAAAGCATGGGCCTGTTTACAAGCGTTAA

mRNA sequence

ATGGACGATAATGAAACAGTAACCATCTTTGAAGAAGATGTTAATCCTGTTGATGATTTGAAAAAACCCGAAGAAACTCGCGAGGAGGAACCATTGGTTGTTCGCCTTAAGGCACGAATGCAAGAGATGAAGGAAAAGGATCTCAAGTGTCTAGGAAATGTAGATACGAATTCCCACATGTGTAAAGAGAATCTTCAACAATGGCTAACTGCTGAAAAAGCACAGGATCGATTTGTTATTCGATCTGGTTCCGATAATGAGGTTTTCTGGAATGATGCTAGACATTTAAAGCATGGGCCTGTTTACAAGCGTTAA

Coding sequence (CDS)

ATGGACGATAATGAAACAGTAACCATCTTTGAAGAAGATGTTAATCCTGTTGATGATTTGAAAAAACCCGAAGAAACTCGCGAGGAGGAACCATTGGTTGTTCGCCTTAAGGCACGAATGCAAGAGATGAAGGAAAAGGATCTCAAGTGTCTAGGAAATGTAGATACGAATTCCCACATGTGTAAAGAGAATCTTCAACAATGGCTAACTGCTGAAAAAGCACAGGATCGATTTGTTATTCGATCTGGTTCCGATAATGAGGTTTTCTGGAATGATGCTAGACATTTAAAGCATGGGCCTGTTTACAAGCGTTAA

Protein sequence

MDDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMCKENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR
Homology
BLAST of Bhi03G001203 vs. TAIR 10
Match: AT5G27640.1 (translation initiation factor 3B1 )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 63  ENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR 105
           ENLQ+WLT EKA+D+ VIRSG D EVFWND R     PV+KR
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 207

BLAST of Bhi03G001203 vs. TAIR 10
Match: AT5G27640.2 (translation initiation factor 3B1 )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 63  ENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR 105
           ENLQ+WLT EKA+D+ VIRSG D EVFWND R     PV+KR
Sbjct: 192 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 233

BLAST of Bhi03G001203 vs. TAIR 10
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2 )

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 63  ENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR 105
           ENLQ+WLT +KA+D+ VIR G D EV+WNDAR  K  PV+KR
Sbjct: 167 ENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKR 208

BLAST of Bhi03G001203 vs. TAIR 10
Match: AT4G39050.1 (Kinesin motor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-09
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 22   KPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMCK 63
            K EET +EEPLV RLKARMQEMKEK++K   N D NSH+CK
Sbjct: 969  KTEETPKEEPLVARLKARMQEMKEKEMKSQANGDANSHICK 1009

BLAST of Bhi03G001203 vs. TAIR 10
Match: AT2G21380.1 (Kinesin motor family protein )

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-08
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 22   KPEETREEEPLVVRLKARMQEMKEKDLK----CLGNVDTNSHMCK 63
            K EET +EEPLV RLKARMQEMKEK++K       N D NSH+CK
Sbjct: 968  KAEETPKEEPLVARLKARMQEMKEKEMKSQAAAAANADANSHICK 1012

BLAST of Bhi03G001203 vs. ExPASy Swiss-Prot
Match: P56821 (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=4097 GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0

Query: 63  ENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR 105
           ENLQQWLT EKA+D+FVIR+G+D EV WNDAR LK   VYKR
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGNDTEVLWNDARQLKPELVYKR 211

BLAST of Bhi03G001203 vs. ExPASy Swiss-Prot
Match: Q9C5Z1 (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=3702 GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-09
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 63  ENLQQWLTAEKAQDRFVIRSGSDNEVFWNDARHLKHGPVYKR 105
           ENLQ+WLT EKA+D+ VIRSG D EVFWND R     PV+KR
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKR 207

BLAST of Bhi03G001203 vs. ExPASy Swiss-Prot
Match: Q8W5R5 (Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KIN7D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-08
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 22   KPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMCK 63
            K EET +EEPLV RLKARMQEMKEK++K   N D NSH+CK
Sbjct: 969  KTEETPKEEPLVARLKARMQEMKEKEMKSQANGDANSHICK 1009

BLAST of Bhi03G001203 vs. ExPASy Swiss-Prot
Match: Q9SJU0 (Kinesin-like protein KIN-7M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KIN7M PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.6e-07
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 22   KPEETREEEPLVVRLKARMQEMKEKDLK----CLGNVDTNSHMCK 63
            K EET +EEPLV RLKARMQEMKEK++K       N D NSH+CK
Sbjct: 968  KAEETPKEEPLVARLKARMQEMKEKEMKSQAAAAANADANSHICK 1012

BLAST of Bhi03G001203 vs. ExPASy Swiss-Prot
Match: Q9FW70 (Kinesin-like protein KIN-7K, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=KIN7K PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-04
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREE-EPLVVRLKARMQEMKEKDLKCLGNVDTNSHM 61
            D N  V   +   N V  L   E    E EPL+VRLKA++QEMKEK+   LG+ D NSH+
Sbjct: 953  DKNVAVVEKQLSDNTVKSLTAEEYRNPEFEPLLVRLKAKIQEMKEKETDSLGDKDGNSHV 1012

Query: 62   CK 63
            CK
Sbjct: 1013 CK 1014

BLAST of Bhi03G001203 vs. NCBI nr
Match: XP_038887849.1 (kinesin-like protein KIN-7D, mitochondrial [Benincasa hispida])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1    MDDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHM 60
            MDDNETVTIFEED N VD+LKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHM
Sbjct: 958  MDDNETVTIFEEDANLVDNLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHM 1017

Query: 61   CK 63
            CK
Sbjct: 1018 CK 1019

BLAST of Bhi03G001203 vs. NCBI nr
Match: XP_031744205.1 (kinesin-like protein KIN-7D, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 2   DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
           DDNETVTIF+ED +PVDD KKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 789 DDNETVTIFKEDADPVDDPKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 848

Query: 62  K 63
           K
Sbjct: 849 K 849

BLAST of Bhi03G001203 vs. NCBI nr
Match: XP_011658551.1 (kinesin-like protein KIN-7D, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDNETVTIF+ED +PVDD KKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 961  DDNETVTIFKEDADPVDDPKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1020

Query: 62   K 63
            K
Sbjct: 1021 K 1021

BLAST of Bhi03G001203 vs. NCBI nr
Match: XP_004148535.1 (kinesin-like protein KIN-7D, mitochondrial isoform X1 [Cucumis sativus] >KGN43168.1 hypothetical protein Csa_020277 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDNETVTIF+ED +PVDD KKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 962  DDNETVTIFKEDADPVDDPKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1021

Query: 62   K 63
            K
Sbjct: 1022 K 1022

BLAST of Bhi03G001203 vs. NCBI nr
Match: TYK22361.1 (kinesin-related protein 11 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-21
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDN TV IF+ED +PVDDLKKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 965  DDNGTVAIFKEDADPVDDLKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1024

Query: 62   K 63
            K
Sbjct: 1025 K 1025

BLAST of Bhi03G001203 vs. ExPASy TrEMBL
Match: A0A0A0K134 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004700 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDNETVTIF+ED +PVDD KKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 962  DDNETVTIFKEDADPVDDPKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1021

Query: 62   K 63
            K
Sbjct: 1022 K 1022

BLAST of Bhi03G001203 vs. ExPASy TrEMBL
Match: A0A1S4DWY2 (kinesin-related protein 11 OS=Cucumis melo OX=3656 GN=LOC103490351 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDN TV IF+ED +PVDDLKKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 965  DDNGTVAIFKEDADPVDDLKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1024

Query: 62   K 63
            K
Sbjct: 1025 K 1025

BLAST of Bhi03G001203 vs. ExPASy TrEMBL
Match: A0A5A7SRF9 (Kinesin-related protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold142G00280 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDN TV IF+ED +PVDDLKKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 977  DDNGTVAIFKEDADPVDDLKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1036

Query: 62   K 63
            K
Sbjct: 1037 K 1037

BLAST of Bhi03G001203 vs. ExPASy TrEMBL
Match: A0A5D3DF93 (Kinesin-related protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00830 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREEEPLVVRLKARMQEMKEKDLKCLGNVDTNSHMC 61
            DDN TV IF+ED +PVDDLKKPEETREEEPLV+RLKARMQEMKEKDLKCLGNVDTNSHMC
Sbjct: 965  DDNGTVAIFKEDADPVDDLKKPEETREEEPLVIRLKARMQEMKEKDLKCLGNVDTNSHMC 1024

Query: 62   K 63
            K
Sbjct: 1025 K 1025

BLAST of Bhi03G001203 vs. ExPASy TrEMBL
Match: A0A6J1EWZ4 (kinesin-like protein KIN-7D, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438909 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 2    DDNETVTIFEEDVNPVDDLKKPEETREE--EPLVVRLKARMQEMKEKDLKCLGNVDTNSH 61
            +DNET+TI +ED +PVDD KKPEETREE  EPLVVRLKARMQEMKEKDLKCLGNVDTNSH
Sbjct: 963  NDNETLTISKEDADPVDDSKKPEETREEEPEPLVVRLKARMQEMKEKDLKCLGNVDTNSH 1022

Query: 62   MCK 63
            MCK
Sbjct: 1023 MCK 1025

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G27640.11.5e-1066.67translation initiation factor 3B1 [more]
AT5G27640.21.5e-1066.67translation initiation factor 3B1 [more]
AT5G25780.12.5e-1064.29eukaryotic translation initiation factor 3B-2 [more]
AT4G39050.14.7e-0970.73Kinesin motor family protein [more]
AT2G21380.16.8e-0864.44Kinesin motor family protein [more]
Match NameE-valueIdentityDescription
P568214.9e-1173.81Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum OX=409... [more]
Q9C5Z12.1e-0966.67Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana OX=... [more]
Q8W5R56.6e-0870.73Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KI... [more]
Q9SJU09.6e-0764.44Kinesin-like protein KIN-7M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KI... [more]
Q9FW707.6e-0448.39Kinesin-like protein KIN-7K, chloroplastic OS=Oryza sativa subsp. japonica OX=39... [more]
Match NameE-valueIdentityDescription
XP_038887849.12.7e-2295.16kinesin-like protein KIN-7D, mitochondrial [Benincasa hispida][more]
XP_031744205.11.7e-2191.80kinesin-like protein KIN-7D, mitochondrial isoform X3 [Cucumis sativus][more]
XP_011658551.11.7e-2191.80kinesin-like protein KIN-7D, mitochondrial isoform X2 [Cucumis sativus][more]
XP_004148535.11.7e-2191.80kinesin-like protein KIN-7D, mitochondrial isoform X1 [Cucumis sativus] >KGN4316... [more]
TYK22361.16.6e-2190.16kinesin-related protein 11 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0K1348.4e-2291.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004700 PE=3 SV=1[more]
A0A1S4DWY23.2e-2190.16kinesin-related protein 11 OS=Cucumis melo OX=3656 GN=LOC103490351 PE=3 SV=1[more]
A0A5A7SRF93.2e-2190.16Kinesin-related protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3DF933.2e-2190.16Kinesin-related protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A6J1EWZ41.1e-1885.71kinesin-like protein KIN-7D, mitochondrial isoform X1 OS=Cucurbita moschata OX=3... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001203Bhi03M001203mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
cellular_component GO:0005871 kinesin complex
cellular_component GO:0005874 microtubule
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity