Bhi03G001166 (gene) Wax gourd (B227) v1

Overview
NameBhi03G001166
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Locationchr3: 32066303 .. 32066566 (-)
RNA-Seq ExpressionBhi03G001166
SyntenyBhi03G001166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATATTACTGAAGACAGTCTTTACAGAATATTTTTGCTCTCATTTCGGGCAATTAGCAATAATTTTTTCTGTGGACTTCTTGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAGGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGAGGGTGCTAACCCAGAGGAGAATCTGGCATCAACAAGGGTATGA

mRNA sequence

ATGAGTGATATTACTGAAGACAGTCTTTACAGAATATTTTTGCTCTCATTTCGGGCAATTAGCAATAATTTTTTCTGTGGACTTCTTGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAGGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGAGGGTGCTAACCCAGAGGAGAATCTGGCATCAACAAGGGTATGA

Coding sequence (CDS)

ATGAGTGATATTACTGAAGACAGTCTTTACAGAATATTTTTGCTCTCATTTCGGGCAATTAGCAATAATTTTTTCTGTGGACTTCTTGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAGGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGAGGGTGCTAACCCAGAGGAGAATCTGGCATCAACAAGGGTATGA

Protein sequence

MSDITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTREGANPEENLASTRV
Homology
BLAST of Bhi03G001166 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFE WVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.2e-04
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 0

Query: 2   SDITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDP 61
           SD+ E S  ++F   F  +S   F  L G  FH A   N+EAW+ DP H+ P A  +W P
Sbjct: 61  SDLEEIS-RKVFSAHFGQLS-IIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVW-P 120

Query: 62  HFGQ 66
             GQ
Sbjct: 121 IVGQ 121

BLAST of Bhi03G001166 vs. ExPASy Swiss-Prot
Match: P58765 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Psilotum nudum OX=3240 GN=psaB PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-25
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQKIFASHFGQLTVIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEA+TR GA+   N+A + V
Sbjct: 96  FGQPAVEAYTRGGASGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy Swiss-Prot
Match: A0ZZ34 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium barbadense OX=3634 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-25
Identity = 57/85 (67.06%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGAPGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy Swiss-Prot
Match: Q2L903 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium hirsutum OX=3635 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-25
Identity = 57/85 (67.06%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGAPGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy Swiss-Prot
Match: Q4VZN4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-25
Identity = 57/85 (67.06%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy Swiss-Prot
Match: Q49KZ9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-25
Identity = 57/85 (67.06%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. NCBI nr
Match: AAT00737.1 (PsaB, partial [Neuwiedia veratrifolia])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 3  DITEDSLYR-IFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDP 62
          DITE+ LY+ IF   F  ++NN   G  GNLFHVAWQGNFE+W+QDPLHVRPIAHAIWDP
Sbjct: 6  DITEERLYQNIFASHFGQLANN-LSGTSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDP 65

Query: 63 HFGQPAVEAFTREGANPEENLASTRV 88
          HFGQPAVEAFTR GA    N+A + V
Sbjct: 66 HFGQPAVEAFTRGGAIGPVNIAYSGV 90

BLAST of Bhi03G001166 vs. NCBI nr
Match: QWW93357.1 (photosystem I P700 apoprotein A2 [Notoscyphus lutescens])

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+SLY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEESLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA+   N+A + V
Sbjct: 96  FGQPAVEAFTRGGASGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. NCBI nr
Match: KAG6540475.1 (hypothetical protein Mapa_018159 [Marchantia paleacea])

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-23
Identity = 58/86 (67.44%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 3   DITEDSLY-RIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDP 62
           D+TE+ LY +IF   F  ++  FF    GNLFHVAWQGNFEAW QDPLHVRPIAHAIWDP
Sbjct: 36  DMTEERLYQKIFASHFGQLAIIFFFWTSGNLFHVAWQGNFEAWGQDPLHVRPIAHAIWDP 95

Query: 63  HFGQPAVEAFTREGANPEENLASTRV 88
           HFGQPAVEAFTR GA+   N+A + V
Sbjct: 96  HFGQPAVEAFTRGGASGPVNIAYSGV 121

BLAST of Bhi03G001166 vs. NCBI nr
Match: KAF2312930.1 (hypothetical protein GH714_042473 [Hevea brasiliensis])

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S+       F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASYFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPA+EAFTR GA+   N+A + V
Sbjct: 96  FGQPAMEAFTRGGAHGPVNIAYSSV 120

BLAST of Bhi03G001166 vs. NCBI nr
Match: YP_010138557.1 (photosystem I P700 apoprotein A2 [Boehmeria nivea] >ARD01915.1 photosystem I P700 apoprotein A2 [Debregeasia saeneb] >QHN51739.1 photosystem I P700 apoprotein A2 [Boehmeria nivea var. nipononivea] >QHN51823.1 photosystem I P700 apoprotein A2 [Boehmeria tomentosa] >QHN51989.1 photosystem I P700 apoprotein A2 [Debregeasia elliptica] >QHN52493.1 photosystem I P700 apoprotein A2 [Debregeasia orientalis] >QHN52997.1 photosystem I P700 apoprotein A2 [Debregeasia squamata])

HSP 1 Score: 117.5 bits (293), Expect = 5.9e-23
Identity = 58/85 (68.24%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+SLY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEESLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy TrEMBL
Match: Q6U181 (Photosystem I (Fragment) OS=Neuwiedia veratrifolia OX=38223 GN=psaB PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-24
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 3  DITEDSLYR-IFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDP 62
          DITE+ LY+ IF   F  ++NN   G  GNLFHVAWQGNFE+W+QDPLHVRPIAHAIWDP
Sbjct: 6  DITEERLYQNIFASHFGQLANN-LSGTSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDP 65

Query: 63 HFGQPAVEAFTREGANPEENLASTRV 88
          HFGQPAVEAFTR GA    N+A + V
Sbjct: 66 HFGQPAVEAFTRGGAIGPVNIAYSGV 90

BLAST of Bhi03G001166 vs. ExPASy TrEMBL
Match: A0A6A6MGT7 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_042473 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-23
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+ LY+    S+       F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEERLYQNIFASYFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPA+EAFTR GA+   N+A + V
Sbjct: 96  FGQPAMEAFTRGGAHGPVNIAYSSV 120

BLAST of Bhi03G001166 vs. ExPASy TrEMBL
Match: A0A6B9TV91 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gonostegia hirta OX=648870 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 58/85 (68.24%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+SLY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEESLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy TrEMBL
Match: A0A6B9TRY5 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Debregeasia longifolia OX=242038 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 58/85 (68.24%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+SLY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEESLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

BLAST of Bhi03G001166 vs. ExPASy TrEMBL
Match: A0A6B9TT16 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Debregeasia saeneb OX=1037061 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 58/85 (68.24%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 3   DITEDSLYRIFLLSFRAISNNFFCGLLGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 62
           DITE+SLY+    S        F    GNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH
Sbjct: 36  DITEESLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPH 95

Query: 63  FGQPAVEAFTREGANPEENLASTRV 88
           FGQPAVEAFTR GA    N+A + V
Sbjct: 96  FGQPAVEAFTRGGALGPVNIAYSGV 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATCG00340.16.0e-2665.88Photosystem I, PsaA/PsaB protein [more]
ATCG00350.12.2e-0440.63Photosystem I, PsaA/PsaB protein [more]
Match NameE-valueIdentityDescription
P587651.3e-2565.88Photosystem I P700 chlorophyll a apoprotein A2 OS=Psilotum nudum OX=3240 GN=psaB... [more]
A0ZZ342.2e-2567.06Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium barbadense OX=3634 G... [more]
Q2L9032.2e-2567.06Photosystem I P700 chlorophyll a apoprotein A2 OS=Gossypium hirsutum OX=3635 GN=... [more]
Q4VZN42.9e-2567.06Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa... [more]
Q49KZ92.9e-2567.06Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo... [more]
Match NameE-valueIdentityDescription
AAT00737.16.9e-2468.60PsaB, partial [Neuwiedia veratrifolia][more]
QWW93357.12.0e-2368.24photosystem I P700 apoprotein A2 [Notoscyphus lutescens][more]
KAG6540475.12.6e-2367.44hypothetical protein Mapa_018159 [Marchantia paleacea][more]
KAF2312930.14.5e-2365.88hypothetical protein GH714_042473 [Hevea brasiliensis][more]
YP_010138557.15.9e-2368.24photosystem I P700 apoprotein A2 [Boehmeria nivea] >ARD01915.1 photosystem I P70... [more]
Match NameE-valueIdentityDescription
Q6U1813.4e-2468.60Photosystem I (Fragment) OS=Neuwiedia veratrifolia OX=38223 GN=psaB PE=3 SV=1[more]
A0A6A6MGT72.2e-2365.88Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_042473 PE=4 SV=1[more]
A0A6B9TV912.8e-2368.24Photosystem I P700 chlorophyll a apoprotein A2 OS=Gonostegia hirta OX=648870 GN=... [more]
A0A6B9TRY52.8e-2368.24Photosystem I P700 chlorophyll a apoprotein A2 OS=Debregeasia longifolia OX=2420... [more]
A0A6B9TT162.8e-2368.24Photosystem I P700 chlorophyll a apoprotein A2 OS=Debregeasia saeneb OX=1037061 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 5..79
e-value: 5.5E-19
score: 67.9
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 1..85
e-value: 3.3E-22
score: 80.3
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 9..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M001166Bhi03M001166mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0034357 photosynthetic membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity