Bhi03G000679 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000679
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein Ycf2
Location	chr3: 17092386 .. 17092589 (+)
RNA-Seq Expression	Bhi03G000679
Synteny	Bhi03G000679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAAGACCTTGGTCTCTACCCGGACCCGATGAAAAAATGGATCACTTCTTATGGACTCGTTGAGAATGATTTTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAATGATCGCAGTCGATTTGATAAATCAACTAATCAGAATGGTTCATTATTAGACCATGGTATTTGA

mRNA sequence

ATGGTTCAAGACCTTGGTCTCTACCCGGACCCGATGAAAAAATGGATCACTTCTTATGGACTCGTTGAGAATGATTTTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAATGATCGCAGTCGATTTGATAAATCAACTAATCAGAATGGTTCATTATTAGACCATGGTATTTGA

Coding sequence (CDS)

ATGGTTCAAGACCTTGGTCTCTACCCGGACCCGATGAAAAAATGGATCACTTCTTATGGACTCGTTGAGAATGATTTTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAATGATCGCAGTCGATTTGATAAATCAACTAATCAGAATGGTTCATTATTAGACCATGGTATTTGA

Protein sequence

MVQDLGLYPDPMKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFDKSTNQNGSLLDHGI

Homology

[Close]

BLAST of Bhi03G000679 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K  ITSYG VEND DLVHGLLEV+GAL+GSSRTE D S+FD
Sbjct: 1973 VAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEKDCSQFD 2026

[Close]

BLAST of Bhi03G000679 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K  ITSYG VEND DLVHGLLEV+GAL+GSSRTE D S+FD
Sbjct: 1973 VAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEKDCSQFD 2026

[Close]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-14
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1962 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2015

[Close]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot
Match: Q7Y667 (Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-14
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYG VEND DLVHGLLEVEGALLGSSRTE D S+FD
Sbjct: 1957 VAQDLWSPPGPDEKNWITSYGFVENDSDLVHGLLEVEGALLGSSRTEKDCSQFD 2010

[Close]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot
Match: A6MMG6 (Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-13
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYG VEND DLV+GLLEVEGAL+GSSRTE D S+FD
Sbjct: 1989 VAQDLWSPPGPDEKNWITSYGFVENDSDLVYGLLEVEGALVGSSRTEKDCSQFD 2042

[Close]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.8e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K  ITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1960 VAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2013

[Close]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.8e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K  ITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1959 IAQDLWSLPGPDEKNEITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDYSQFD 2012

[Close]

BLAST of Bhi03G000679 vs. NCBI nr
Match: YP_009455453.1 (hypothetical protein RF2 [Adenolobus garipensis] >YP_009455470.1 hypothetical protein RF2 [Adenolobus garipensis] >AUG83449.1 hypothetical protein RF2 [Adenolobus garipensis] >AUG83466.1 hypothetical protein RF2 [Adenolobus garipensis])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1926 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 1979

[Close]

BLAST of Bhi03G000679 vs. NCBI nr
Match: YP_001294228.1 (hypothetical chloroplast RF2 [Buxus microphylla] >YP_001294246.1 hypothetical chloroplast RF2 [Buxus microphylla] >A6MM80.1 RecName: Full=Protein Ycf2 [Buxus microphylla] >ABQ45292.1 hypothetical chloroplast RF2 [Buxus microphylla] >ABQ45312.1 hypothetical chloroplast RF2 [Buxus microphylla])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1962 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 2015

[Close]

BLAST of Bhi03G000679 vs. NCBI nr
Match: YP_009234938.1 (Ycf2 [Pachysandra terminalis] >YP_009234955.1 Ycf2 [Pachysandra terminalis] >AMD08656.1 Ycf2 [Pachysandra terminalis] >AMD08673.1 Ycf2 [Pachysandra terminalis])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1936 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 1989

[Close]

BLAST of Bhi03G000679 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            +VQDL   P P  K  ITSYGLVEND DLVHGLLEVEGALLGSSRTE D SRFD
Sbjct: 1961 VVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

[Close]

BLAST of Bhi03G000679 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            +VQDL   P P  K  ITSYGLVEND DLVHGLLEVEGALLGSSRTE D SRFD
Sbjct: 1961 VVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2014

[Close]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL
Match: A0A2H5BD46 (Protein Ycf2 OS=Adenolobus garipensis OX=375005 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1926 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 1979

[Close]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL
Match: A0A125R396 (Protein Ycf2 OS=Pachysandra terminalis OX=74825 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            + QDL   P P  K WITSYGLVEND DLVHGLLEVEGAL+GSSRTE D S+FD
Sbjct: 1936 VAQDLWSLPGPDEKNWITSYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFD 1989

[Close]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            +VQDL   P P  K  ITSYGLVEND DLVHGLLEVEGALLGSSRTE D SRFD
Sbjct: 1959 VVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2012

[Close]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            +VQDL   P P  K  ITSYGLVEND DLVHGLLEVEGALLGSSRTE D SRFD
Sbjct: 1958 VVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2011

[Close]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL
Match: A0A6H0EV63 (Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1    MVQDLGLYPDP-MKKWITSYGLVENDFDLVHGLLEVEGALLGSSRTENDRSRFD 54
            +VQDL   P P  K  ITSYGLVEND DLVHGLLEVEGALLGSSRTE D SRFD
Sbjct: 1969 VVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFD 2022

The following BLAST results are available for this feature:

BLAST of Bhi03G000679 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	5.9e-13	68.52	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	5.9e-13	68.52	Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of Bhi03G000679 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM80	1.8e-14	74.07	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]
Q7Y667	4.0e-14	74.07	Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1	[more]
A6MMG6	4.4e-13	70.37	Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1	[more]
A0A379	5.8e-13	72.22	Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	5.8e-13	72.22	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Bhi03G000679 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009455453.1	1.4e-11	74.07	hypothetical protein RF2 [Adenolobus garipensis] >YP_009455470.1 hypothetical pr...	[more]
YP_001294228.1	1.4e-11	74.07	hypothetical chloroplast RF2 [Buxus microphylla] >YP_001294246.1 hypothetical ch...	[more]
YP_009234938.1	1.4e-11	74.07	Ycf2 [Pachysandra terminalis] >YP_009234955.1 Ycf2 [Pachysandra terminalis] >AMD...	[more]
QIT04093.1	2.3e-11	77.78	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
YP_009752370.1	2.3e-11	77.78	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]

BLAST of Bhi03G000679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5BD46	6.6e-12	74.07	Protein Ycf2 OS=Adenolobus garipensis OX=375005 GN=ycf2 PE=3 SV=1	[more]
A0A125R396	6.6e-12	74.07	Protein Ycf2 OS=Pachysandra terminalis OX=74825 GN=ycf2 PE=3 SV=1	[more]
A0A343F2F1	1.1e-11	77.78	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	1.1e-11	77.78	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EV63	1.1e-11	77.78	Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..67
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 13..56
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 13..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000679	Bhi03M000679	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity