Bhi03G000438 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000438
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Location	chr3: 11253086 .. 11253767 (-)
RNA-Seq Expression	Bhi03G000438
Synteny	Bhi03G000438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATATCCGCCAAGAGCGACAAATACAAATTCAATTCCTACCAAACACATGGGTAACTGTTGCAAAGGTCAGTTCTCTACTCCGGTGATTGAAGGCGGTGACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGATGGTAATTTGAGAGAGGTAAAAATAAGGATGACCAAAAAGGAGCTAGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGAAAGTACGTATACGTAAAGTATATATTATTTGTTTTTGGGTTAAAAAAAATTATATTATTCGGTTTTTTGTATTTTAATTTTCTTTTATTTTTGGAGTTTGTTAAAGTTATTGCATAATTTAAAATACCATTGCAAATATAAGGTTTTTATTGAGATCAGAATAATATTTGTGAGAAGATGGTATGTTTTAACGTAGGAGGGGAAAGAATAGAACGGATTCTATTTAGATCCCTTTAATAATCATTTGGTTTTGAAAACTAAATCTATTTCATCCACATTTTTTACAATTAATTTGCATCATTCTTAAGTACCATG

mRNA sequence

CAAATATCCGCCAAGAGCGACAAATACAAATTCAATTCCTACCAAACACATGGGTAACTGTTGCAAAGGTCAGTTCTCTACTCCGGTGATTGAAGGCGGTGACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGATGGTAATTTGAGAGAGGTAAAAATAAGGATGACCAAAAAGGAGCTAGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGAAAGTACGTATACGTAAAGTATATATTATTTGTTTTTGGGTTAAAAAAAATTATATTATTCGGTTTTTTGTATTTTAATTTTCTTTTATTTTTGGAGTTTGTTAAAGTTATTGCATAATTTAAAATACCATTGCAAATATAAGGTTTTTATTGAGATCAGAATAATATTTGTGAGAAGATGGTATGTTTTAACGTAGGAGGGGAAAGAATAGAACGGATTCTATTTAGATCCCTTTAATAATCATTTGGTTTTGAAAACTAAATCTATTTCATCCACATTTTTTACAATTAATTTGCATCATTCTTAAGTACCATG

Coding sequence (CDS)

ATGGGTAACTGTTGCAAAGGTCAGTTCTCTACTCCGGTGATTGAAGGCGGTGACCGGAGGACTCCGCCGTGGAAGAACCACCGTCAGAGAAAGCCTGGAGATGGTAATTTGAGAGAGGTAAAAATAAGGATGACCAAAAAGGAGCTAGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGATCAAAACGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAAAGCATTCCTGAGATAATTTGA

Protein sequence

MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEII

Homology

[Close]

BLAST of Bhi03G000438 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 38  REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPS 97
           RE+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +   +    Q   W+P 
Sbjct: 64  REIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ--PWKPV 123

Query: 98  LQSIPEI 105
           LQSIPE+
Sbjct: 124 LQSIPEM 128

[Close]

BLAST of Bhi03G000438 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 39  EVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSL 98
           E+KIR+TKK+L +L+  +N+ D +F+        +       NN    +  QQR WRP L
Sbjct: 56  EIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPIL-------NNRGYEEANQQRLWRPVL 114

Query: 99  QSIPEI 105
           QSIPE+
Sbjct: 116 QSIPEV 114

[Close]

BLAST of Bhi03G000438 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 92/114 (80.70%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDG--------NLREVKIRMTKKELEEL 60
           MGNCCKGQ+STPV    DRRTPP KNHRQR+  +G        NLREVKIRMTKKELEEL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 106
           VGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Bhi03G000438 vs. NCBI nr
Match: KGN49118.1 (hypothetical protein Csa_002843 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.6e-37
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDG-----NLREVKIRMTKKELEELVGW 60
           MGNCCK Q STPV+EG    TPP+KNH QR+  +G     NLREVKIRMTKKEL+ELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 106
           LNMADSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of Bhi03G000438 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 6.6e-37
Identity = 88/124 (70.97%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPG------------DGNLREVKIRMTKKE 60
           MGNCC+GQ STPV+ GGDRR  P KN RQR+ G            +GNLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQSI 106
           L+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of Bhi03G000438 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-35
Identity = 84/124 (67.74%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPG------------DGNLREVKIRMTKKE 60
           MGNCC+GQ STPV+ GGDRR  P KN  QR+ G            +GNLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRHGANSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQSI 106
           L+ELVGWLNMADSSFE VMARLVNVIS+ NG++++       QMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of Bhi03G000438 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 83/124 (66.94%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPG------------DGNLREVKIRMTKKE 60
           MGNCC+GQ STPV+ G +RR  P KN RQR+ G            +GN+RE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQSI 106
           L+ELVGWLNMADSSFE VMARLVNVIS+QNG++++       QMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 92/114 (80.70%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDG--------NLREVKIRMTKKELEEL 60
           MGNCCKGQ+STPV    DRRTPP KNHRQR+  +G        NLREVKIRMTKKELEEL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 106
           VGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 92/114 (80.70%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDG--------NLREVKIRMTKKELEEL 60
           MGNCCKGQ+STPV    DRRTPP KNHRQR+  +G        NLREVKIRMTKKELEEL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 106
           VGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.2e-37
Identity = 88/124 (70.97%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPG------------DGNLREVKIRMTKKE 60
           MGNCC+GQ STPV+ GGDRR  P KN RQR+ G            +GNLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQSI 106
           L+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.2e-37
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MGNCCKGQFSTPVIEGGDRRTPPWKNHRQRKPGDG-----NLREVKIRMTKKELEELVGW 60
           MGNCCK Q STPV+EG    TPP+KNH QR+  +G     NLREVKIRMTKKEL+ELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 106
           LNMADSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL
Match: A0A438EDR4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 38  REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPS 97
           REVKI++TKKELEEL+  ++M   + EHV+A+L+      NG +ND+    ++QRSWRP+
Sbjct: 63  REVKIKITKKELEELLARVDMQGVTLEHVLAQLM-----INGTDNDRSADKQRQRSWRPA 122

Query: 98  LQSIPEI 105
           LQSIPE+
Sbjct: 123 LQSIPEV 124

The following BLAST results are available for this feature:

BLAST of Bhi03G000438 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.1e-05	38.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	1.9e-05	39.39	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

BLAST of Bhi03G000438 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi03G000438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441100.1	3.4e-41	80.70	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
KGN49118.1	6.6e-37	76.58	hypothetical protein Csa_002843 [Cucumis sativus]	[more]
XP_022977330.1	6.6e-37	70.97	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
XP_023544016.1	6.2e-35	67.74	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]
KAG6603773.1	1.8e-34	66.94	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi03G000438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNX5	1.6e-41	80.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	1.6e-41	80.70	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	3.2e-37	70.97	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A0A0KHU7	3.2e-37	76.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A438EDR4	1.8e-08	52.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000438	Bhi03M000438	mRNA