Bhi03G000228 (gene) Wax gourd (B227) v1

Overview
NameBhi03G000228
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr3: 6267739 .. 6269107 (-)
RNA-Seq ExpressionBhi03G000228
SyntenyBhi03G000228
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAAATTGGTGTAAAAAGGTTTCTAAAAGCCTTTTCTTAGTTGTCAATGCTCAGTCCTTAATGGGAAAAAAAGTGAAATTAATCAAAAAGTCGATTTCTTCTCTCTCTCTCGTTTTTTTTCTTTACGTATGTTTATAAATGAGCTGTAAATTTCCTTCCGCCGTGCATCACACGCTAAACTAATTATCATTAATTTGGATTGCCCACTTCATAAACCTTGCAAATTTGAAAATTAATCCTCATTATCTCAACCCCCACATCGCCCATCCAGCAATATGAATCATCGGATCGGATCATTAGCCTTAACCACACAGATAAATATTTACATTATCATATCTTCAGTAATTAATTAAAACACTACATCTCTCTATAATTTCCACATAAAATCATCGACACAAAAAGGAAAATTAAAAAAAAAAAAAAAAGGTTAAGACGTTTGACCGTGTTGACCGATAATCTTCCGCCGTTTGAAAGGAAAAACTTGAGTAAAATCCTGTTCCGCCACCGTGAGATGCCACCCCTCCACCGTATCTAATTCAAGCTGATGAATAATCCCAGAAGCCGCATCGTAAAGCTGCCCATAATCCTCTGGCAGCTCGCCGGAAAGGGTCCGGCAATTAGGCGGCGGCTTGGCTCTCCGGCGACCGGCTCCGATGGGTACGTTCCGGAGCGCCCCACCGGCCGTCCAGTACCTTTGGCAACCCTTGCAGAAATGTCTAGGCTGATTAACATTATAATTGTTGAAGTAACAGAATTTGGTGTCCATACTCTTACATCTTGGGCATGGAATAATTTTTTCTGGCCTCTTCATCTCTGTTTCATCACCTGCACCGCCGCCGTGTTTCTCCGGTTCCTCCTTCATTTTTCTGTTCTGTAAATGAATCATTGTGCCAAAAAGCTTAATTCCATCGCTGTTGCTACTATGAACCTGAGCCATATGTAAAAACAGAGAGAAACAGAGAATTCAGGGGTTTTCCTAAATTATTCTGTTTTTTGCAAGTGTGTTGTGCAGAGAGGACATATAGGGAAATGGGTTTATATATGGGTGGAGGTAATGGAGGTAAAAAGTACTTAAAAAGAAAGTGCTTTATAATTTATAAAGCAGTAAAACATGAGAATCAATGGGACAAAACAGACGCCAATTAGTCAAATTGATATGGTGGGAAAGAGTGAATGACTGACTGGGTAATGAGCCCTTTTTTTCCTCTTTTTATATATATATATATATACATATATACATCATTTGCTACATGTCATCATCAGATTCTCTATCAATAAAGAGAAAAGGAAAAGGAAAAAGAAGTGGGAAATTTTTATTTTTTGAAATTAAAAAAAAAAAGTATCTGAAAAGTAGTTCCTAATCCAAGG

mRNA sequence

AGTAAATTGGTGTAAAAAGGTTTCTAAAAGCCTTTTCTTAGTTGTCAATGCTCAGTCCTTAATGGGAAAAAAAGTGAAATTAATCAAAAAGTCGATTTCTTCTCTCTCTCTCGTTTTTTTTCTTTACGTATGTTTATAAATGAGCTGTAAATTTCCTTCCGCCGTGCATCACACGCTAAACTAATTATCATTAATTTGGATTGCCCACTTCATAAACCTTGCAAATTTGAAAATTAATCCTCATTATCTCAACCCCCACATCGCCCATCCAGCAATATGAATCATCGGATCGGATCATTAGCCTTAACCACACAGATAAATATTTACATTATCATATCTTCAGTAATTAATTAAAACACTACATCTCTCTATAATTTCCACATAAAATCATCGACACAAAAAGGAAAATTAAAAAAAAAAAAAAAAGGTTAAGACGTTTGACCGTGTTGACCGATAATCTTCCGCCGTTTGAAAGGAAAAACTTGAGTAAAATCCTGTTCCGCCACCGTGAGATGCCACCCCTCCACCGTATCTAATTCAAGCTGATGAATAATCCCAGAAGCCGCATCGTAAAGCTGCCCATAATCCTCTGGCAGCTCGCCGGAAAGGGTCCGGCAATTAGGCGGCGGCTTGGCTCTCCGGCGACCGGCTCCGATGGGTACGTTCCGGAGCGCCCCACCGGCCGTCCAGTACCTTTGGCAACCCTTGCAGAAATGTCTAGGCTGATTAACATTATAATTGTTGAAGTAACAGAATTTGGTGTCCATACTCTTACATCTTGGGCATGGAATAATTTTTTCTGGCCTCTTCATCTCTGTTTCATCACCTGCACCGCCGCCGTGTTTCTCCGGTTCCTCCTTCATTTTTCTGTTCTGTAAATGAATCATTGTGCCAAAAAGCTTAATTCCATCGCTGTTGCTACTATGAACCTGAGCCATATGTAAAAACAGAGAGAAACAGAGAATTCAGGGGTTTTCCTAAATTATTCTGTTTTTTGCAAGTGTGTTGTGCAGAGAGGACATATAGGGAAATGGGTTTATATATGGGTGGAGGTAATGGAGGTAAAAAGTACTTAAAAAGAAAGTGCTTTATAATTTATAAAGCAGTAAAACATGAGAATCAATGGGACAAAACAGACGCCAATTAGTCAAATTGATATGGTGGGAAAGAGTGAATGACTGACTGGGTAATGAGCCCTTTTTTTCCTCTTTTTATATATATATATATATACATATATACATCATTTGCTACATGTCATCATCAGATTCTCTATCAATAAAGAGAAAAGGAAAAGGAAAAAGAAGTGGGAAATTTTTATTTTTTGAAATTAAAAAAAAAAAGTATCTGAAAAGTAGTTCCTAATCCAAGG

Coding sequence (CDS)

ATGAATAATCCCAGAAGCCGCATCGTAAAGCTGCCCATAATCCTCTGGCAGCTCGCCGGAAAGGGTCCGGCAATTAGGCGGCGGCTTGGCTCTCCGGCGACCGGCTCCGATGGGTACGTTCCGGAGCGCCCCACCGGCCGTCCAGTACCTTTGGCAACCCTTGCAGAAATGTCTAGGCTGATTAACATTATAATTGTTGAAGTAACAGAATTTGGTGTCCATACTCTTACATCTTGGGCATGGAATAATTTTTTCTGGCCTCTTCATCTCTGTTTCATCACCTGCACCGCCGCCGTGTTTCTCCGGTTCCTCCTTCATTTTTCTGTTCTGTAA

Protein sequence

MNNPRSRIVKLPIILWQLAGKGPAIRRRLGSPATGSDGYVPERPTGRPVPLATLAEMSRLINIIIVEVTEFGVHTLTSWAWNNFFWPLHLCFITCTAAVFLRFLLHFSVL
Homology
[Close]
BLAST of Bhi03G000228 vs. NCBI nr
Match: KAG7034644.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-33
Identity = 80/111 (72.07%), Postives = 87/111 (78.38%), Query Frame = 0 

Query: 1   MNNPRSRIVKLPIILWQLAGKGPAIRRRLGSPATGSDGYVPERPTGRPVPLATLAEMSRL 60
           MNNPRS IVKLPII+ QL GK PAI RRLGSP++ SDG +PERPT  PVPL TL EMS L
Sbjct: 1   MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGL 60

Query: 61  INIIIVEVTEFGVHTLTSWAWNNFFWPLHLCFIT-CTAAVFLRFLLHFSVL 111
           INI+IV+VTEFGVH LTSW  NN F PLHLC IT  TAA FLR +L FS L
Sbjct: 61  INIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAAFLRLILDFSGL 111

[Close]
BLAST of Bhi03G000228 vs. ExPASy TrEMBL
Match: A0A0A0KHV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519575 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 93/114 (81.58%), Postives = 94/114 (82.46%), Query Frame = 0 

Query: 1   MNNPRSRIVKLPIILWQLAGKGPAIRRRLGSPATGSDGYVPERPTGRPVPLATLAEMSRL 60
           MNNPRSRIV LPIIL QLAGKGPAIRRRLGS  T SDGYV ERPTGRPVPL TLAEMSRL
Sbjct: 12  MNNPRSRIVILPIILRQLAGKGPAIRRRLGSSTTSSDGYVTERPTGRPVPLTTLAEMSRL 71

Query: 61  INIIIVEVTEFGVHTLTSWAWNNFFWPLHLCFITCTAA----VFLRFLLHFSVL 111
           INI+IVEVTEFGVHTLTSW WNN F PLHLCFIT T A     FL FLL FS L
Sbjct: 72  INIVIVEVTEFGVHTLTSWTWNNLFRPLHLCFITFTTAGDRSSFLWFLLQFSGL 125

The following BLAST results are available for this feature:
BLAST of Bhi03G000228 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi03G000228 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi03G000228 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034644.17.9e-3372.07Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub... [more]
BLAST of Bhi03G000228 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHV64.2e-4081.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519575 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M000228Bhi03M000228mRNA