Bhi03G000194 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000194
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ribosome biogenesis protein
Location	chr3: 4940527 .. 4941377 (-)
RNA-Seq Expression	Bhi03G000194
Synteny	Bhi03G000194

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACTACAAGAGAAATGCTTGCAGATGCCCAGACCAATTTTCACTCTGTACCTCTCGTAATCTGCCCTTTAACGCAGTGGTATGTTTGTGAGGAGTTGTCAGGGATTTGGAACAAAAGGATACAAATAATTAGTGAAGCAACTAAAGATCAGCATTGTATTTGTCATGTTTGTTACTTGATGCACTCGTCGAAGGAAGAGCTAGTAACCAATCATTCGCTTCTCATGTTTGGTATTTGATTGATTCAATGTTCCTATTCTTTCTGTGAAGTATTGATCTTGTACATGTTTTATGACCCCACCACCACCACAAGAGAGAAGAAAGAATAATTGAAGCTTTATATTTTTTTTGTCCATGCTTTCATCTTCTTCTTTTTGTATTCTGCTAAGATTGATTGTGCTACAGAGGAAAAAACTTCGTGGACGTAAGAGGGACTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTCTTCCTGGATTGGAGGCTTCTGAACAAAAATCTTCTGCAGCCAAGTTGTTGAAAGTAGATTGCAAGTCTAGGCTGAAGTTTATGTATGTTTCTTGCTTGTTACCATTGTTTGACATGTTTAATAGTTTATCTTTATTCTTATGTTTTGTAATTATGGGTTCGTTTTATTATATCAGATTGCAGGAATCAAAGCAAATAGTTAGAGTTCTTAGTCATCCGAAATTCCTGGCAGACCCCTTGGGATCTATTCAACCACATTTAGAGACCATACAACCAATTGAGGAACTGAAGAAAAAGAGGAATATAAATGGTAGCAAGAAAAGGAAAGAGGAGAAGTCGAAAGCCTCTGCAAGACCTTCGACTATGGAGATGTGA

mRNA sequence

ATGTCAAACTACAAGAGAAATGCTTGCAGATGCCCAGACCAATTTTCACTCTGTACCTCTCGTAATCTGCCCTTTAACGCAGTGAGGAAAAAACTTCGTGGACGTAAGAGGGACTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTCTTCCTGGATTGGAGGCTTCTGAACAAAAATCTTCTGCAGCCAAGTTGTTGAAAGTAGATTGCAAGTCTAGGCTGAAGTTTATATTGCAGGAATCAAAGCAAATAGTTAGAGTTCTTAGTCATCCGAAATTCCTGGCAGACCCCTTGGGATCTATTCAACCACATTTAGAGACCATACAACCAATTGAGGAACTGAAGAAAAAGAGGAATATAAATGGTAGCAAGAAAAGGAAAGAGGAGAAGTCGAAAGCCTCTGCAAGACCTTCGACTATGGAGATGTGA

Coding sequence (CDS)

ATGTCAAACTACAAGAGAAATGCTTGCAGATGCCCAGACCAATTTTCACTCTGTACCTCTCGTAATCTGCCCTTTAACGCAGTGAGGAAAAAACTTCGTGGACGTAAGAGGGACTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTCTTCCTGGATTGGAGGCTTCTGAACAAAAATCTTCTGCAGCCAAGTTGTTGAAAGTAGATTGCAAGTCTAGGCTGAAGTTTATATTGCAGGAATCAAAGCAAATAGTTAGAGTTCTTAGTCATCCGAAATTCCTGGCAGACCCCTTGGGATCTATTCAACCACATTTAGAGACCATACAACCAATTGAGGAACTGAAGAAAAAGAGGAATATAAATGGTAGCAAGAAAAGGAAAGAGGAGAAGTCGAAAGCCTCTGCAAGACCTTCGACTATGGAGATGTGA

Protein sequence

MSNYKRNACRCPDQFSLCTSRNLPFNAVRKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRVLSHPKFLADPLGSIQPHLETIQPIEELKKKRNINGSKKRKEEKSKASARPSTMEM

Homology

[Close]

BLAST of Bhi03G000194 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KK+R R++ LKA+DL+ LSE LP   A ++ +  A  LK++CK R K +L E +++ +V
Sbjct: 44  KKKIRSRQKKLKAYDLTNLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKV 103

Query: 89  LSHPKFLADPLGSIQPHLETIQP--IEELKKKRNINGSKKRKEEKSKASA 137
           L HP F ADP+GSI  HL + QP   E+ KKK N NGSKKR ++K K  +
Sbjct: 104 LDHPAFQADPVGSIFQHLLSQQPPVEEKPKKKTNTNGSKKRNKKKGKTDS 153

[Close]

BLAST of Bhi03G000194 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KK+R R++ LKA+DL+ LSE LP   A ++ +  A  LK++CK R K +L E +++ +V
Sbjct: 44  KKKIRSRQKKLKAYDLTNLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKV 103

Query: 89  LSHPKFLADPLGSIQPHLETIQP--IEELKKKRNINGSKKRKEEKSKASA 137
           L HP F ADP+GSI  HL + QP   E+ KKK N NGSKKR ++K K  +
Sbjct: 104 LDHPAFQADPVGSIFQHLLSQQPPVEEKPKKKTNTNGSKKRNKKKGKTDS 153

[Close]

BLAST of Bhi03G000194 vs. NCBI nr
Match: XP_038881620.1 (uncharacterized protein LOC120073082 [Benincasa hispida])

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-51
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV
Sbjct: 35  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 94

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKRNINGSKKRKEEKSKASARPSTMEM 144
           LSHPKFLADPLGSIQPHLETIQPIEELKKKRNINGSKKRKEEKSKASARPSTMEM
Sbjct: 95  LSHPKFLADPLGSIQPHLETIQPIEELKKKRNINGSKKRKEEKSKASARPSTMEM 149

[Close]

BLAST of Bhi03G000194 vs. NCBI nr
Match: XP_023515417.1 (putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_023515418.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 80/116 (68.97%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KKLR RKRDLKAFDL+ALSE LPGL+A +QK+S  + LKV+CKSRLKF+L+E+KQ+  V
Sbjct: 43  KKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTE-LKVNCKSRLKFVLKETKQMGTV 102

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPLG+I  HLE+ QP+EE KKK+ N NGSKKRKE+KSKA+A+PS+MEM
Sbjct: 103 LNHPAFQADPLGAIHLHLESTQPVEEPKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. NCBI nr
Match: XP_022922102.1 (putative ribosome biogenesis protein slx9-like [Cucurbita moschata] >XP_022922103.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-30
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KKLR RKRDLKAFDL+ALSE LPGL+A +QK+S  + LKV+CKSRLKF+L+E+KQ+  V
Sbjct: 43  KKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTE-LKVNCKSRLKFVLKETKQMGTV 102

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPLG+I  HL++ QP+EE KKK+ N NGSKKRKE+KSKA+A+PS+MEM
Sbjct: 103 LNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. NCBI nr
Match: XP_038900086.1 (putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900088.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900089.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900091.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-30
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +K  R RKRDLKAFDLS LSE LPGLEA +QK SAA+ LK++CKSRLKFIL+E KQ+  V
Sbjct: 44  KKSHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSAAE-LKLNCKSRLKFILKERKQMGTV 103

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKRNINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPL +IQ HLE  QPIEE KKK N NGSKKRKE+KSKAS RPS+MEM
Sbjct: 104 LNHPVFQADPLRAIQLHLEGTQPIEEPKKKTNKNGSKKRKEKKSKASPRPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. NCBI nr
Match: XP_022987345.1 (putative ribosome biogenesis protein slx9-like [Cucurbita maxima] >XP_022987346.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-30
Identity = 79/116 (68.10%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KKLR RKRDLKAFDL+ALSE LPGL+  +QK+S  + LKV+CKSRLKF+L+E+KQ+  V
Sbjct: 43  KKKLRRRKRDLKAFDLTALSEFLPGLKTPKQKTSDTE-LKVNCKSRLKFVLKETKQMGTV 102

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPLG+I  HLE+ QP+EE KKK+ N NGSKKRKE+KSKA+A+PS+MEM
Sbjct: 103 LNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL
Match: A0A6J1E5M8 (putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=LOC111430153 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KKLR RKRDLKAFDL+ALSE LPGL+A +QK+S  + LKV+CKSRLKF+L+E+KQ+  V
Sbjct: 43  KKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTE-LKVNCKSRLKFVLKETKQMGTV 102

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPLG+I  HL++ QP+EE KKK+ N NGSKKRKE+KSKA+A+PS+MEM
Sbjct: 103 LNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.3e-30
Identity = 79/116 (68.10%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +KKLR RKRDLKAFDL+ALSE LPGL+  +QK+S  + LKV+CKSRLKF+L+E+KQ+  V
Sbjct: 43  KKKLRRRKRDLKAFDLTALSEFLPGLKTPKQKTSDTE-LKVNCKSRLKFVLKETKQMGTV 102

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPLG+I  HLE+ QP+EE KKK+ N NGSKKRKE+KSKA+A+PS+MEM
Sbjct: 103 LNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +K  R RKRDLKAFDLS LSE LPGLEA++QK SAA+ LK++CKSRLKFIL+E KQ+  V
Sbjct: 44  KKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAE-LKLNCKSRLKFILKERKQMGTV 103

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPL ++Q HLE  QPIEE KKK+ N NGSKKRKE+KSKASA+PS+MEM
Sbjct: 104 LNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +K  R RKRDLKAFDLS LSE LPGLEA++QK SAA+ LK++CKSRLKFIL+E KQ+  V
Sbjct: 252 KKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAE-LKLNCKSRLKFILKERKQMGTV 311

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPL ++Q HLE  QPIEE KKK+ N NGSKKRKE+KSKA ARPS+MEM
Sbjct: 312 LNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL
Match: A0A1S4DWK8 (putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103491493 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 29  RKKLRGRKRDLKAFDLSALSESLPGLEASEQKSSAAKLLKVDCKSRLKFILQESKQIVRV 88
           +K  R RKRDLKAFDLS LSE LPGLEA++QK SAA+ LK++CKSRLKFIL+E KQ+  V
Sbjct: 20  KKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAE-LKLNCKSRLKFILKERKQMGTV 79

Query: 89  LSHPKFLADPLGSIQPHLETIQPIEELKKKR-NINGSKKRKEEKSKASARPSTMEM 144
           L+HP F ADPL ++Q HLE  QPIEE KKK+ N NGSKKRKE+KSKA ARPS+MEM
Sbjct: 80  LNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSKALARPSSMEM 134

The following BLAST results are available for this feature:

BLAST of Bhi03G000194 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01640.1	2.6e-18	47.27	unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bac...	[more]
AT2G01640.2	2.6e-18	47.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

BLAST of Bhi03G000194 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi03G000194 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881620.1	3.8e-51	100.00	uncharacterized protein LOC120073082 [Benincasa hispida]	[more]
XP_023515417.1	2.8e-30	68.97	putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022922102.1	3.7e-30	68.10	putative ribosome biogenesis protein slx9-like [Cucurbita moschata] >XP_02292210...	[more]
XP_038900086.1	3.7e-30	72.17	putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087...	[more]
XP_022987345.1	4.8e-30	68.10	putative ribosome biogenesis protein slx9-like [Cucurbita maxima] >XP_022987346....	[more]

BLAST of Bhi03G000194 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5M8	1.8e-30	68.10	putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JDX4	2.3e-30	68.10	putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L113	8.8e-30	70.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1	[more]
A0A5A7V4K7	2.0e-29	70.69	Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S4DWK8	2.0e-29	70.69	putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..137
None	No IPR available	PANTHER	PTHR31109:SF2	PROTEIN FAM207A	coord: 29..118
None	No IPR available	PANTHER	PTHR31109	PROTEIN FAM207A	coord: 29..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000194	Bhi03M000194	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0030686	90S preribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030688	preribosome, small subunit precursor