Bhi03G000081 (gene) Wax gourd (B227) v1

Overview


Name	Bhi03G000081
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr3: 2201695 .. 2202426 (-)
RNA-Seq Expression	Bhi03G000081
Synteny	Bhi03G000081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTGGTTGTTTTCTTATCTATCAGGGATAGTTTGCCTAGTATTATTAGTGAGTCTATTAAAGAAATGACTCAGGCTATTCCTGAGACAAATGCAGTCCCAGTCATGGAGAATGTGTATAGTAAAAAGGTTGTTATGTCTGATGAAAATGTTGTTGATACTGCTGTGAAAGATGTGATTTTGAATATTGCTGATCCTGAAAAGTCTATGCCTATGAATAGTAAATCAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATCTGAACTGGGTGTGTATATTTTTAGGCTTTCACAGTTTTGGTTTGAATATTCATAATGATACCATGAGTGCTTTAGGGCATCCCCAAGATATGTTTTCTGATACCGCTATACAATTACAACCCGTCTTTGCTCAATGGATACAAAACACCCATGCTTTAGCACCTAGTATAACGGCCCCCGGTGCAACAACAGCCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTTGCTTTGTTACCTATTCCGTTAGGAACCGCAGATTTTTTGGTACACGTATTCATGCATTTACGATTCATGTAACGGTATTGATACTCCTGAAAGGTGTTCTATTTTCTCGTAGCTCGCGTTTGATACCGGATAAAGCAAATCTTGGTTTTCGTTTCCCTTGTGATGGACCCGGAAGAGGAGGTACATGTCAAGTATCCGCTTGGAATCATGTCTTCTTAG

mRNA sequence

AATGTGGTTGTTTTCTTATCTATCAGGGATAGTTTGCCTAGTATTATTAGTGAGTCTATTAAAGAAATGACTCAGGCTATTCCTGAGACAAATGCAGTCCCAGTCATGGAGAATGTGTATAGTAAAAAGGTTGTTATGTCTGATGAAAATGTTGTTGATACTGCTGTGAAAGATGTGATTTTGAATATTGCTGATCCTGAAAAGTCTATGCCTATGAATACCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTTGCTTTGTTACCTATTCCGTTAGGAACCGCAGATTTTTTGGTACACGAGGTACATGTCAAGTATCCGCTTGGAATCATGTCTTCTTAG

Coding sequence (CDS)

AATGTGGTTGTTTTCTTATCTATCAGGGATAGTTTGCCTAGTATTATTAGTGAGTCTATTAAAGAAATGACTCAGGCTATTCCTGAGACAAATGCAGTCCCAGTCATGGAGAATGTGTATAGTAAAAAGGTTGTTATGTCTGATGAAAATGTTGTTGATACTGCTGTGAAAGATGTGATTTTGAATATTGCTGATCCTGAAAAGTCTATGCCTATGAATACCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTTGCTTTGTTACCTATTCCGTTAGGAACCGCAGATTTTTTGGTACACGAGGTACATGTCAAGTATCCGCTTGGAATCATGTCTTCTTAG

Protein sequence

NVVVFLSIRDSLPSIISESIKEMTQAIPETNAVPVMENVYSKKVVMSDENVVDTAVKDVILNIADPEKSMPMNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVHVKYPLGIMSS

Homology

[Close]

BLAST of Bhi03G000081 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGG+LVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 502 STSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 502 STSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot
Match: Q8S8X4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Atropa belladonna OX=33113 GN=psaA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 502 STSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot
Match: Q7YJX2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psaA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 502 STSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot
Match: A0A335 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psaA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 502 STSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot
Match: Q9MUK0 (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cycas revoluta OX=3396 GN=psaA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 74  TTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 491 STSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 526

[Close]

BLAST of Bhi03G000081 vs. NCBI nr
Match: YP_009466327.1 (photosystem I P700 apoprotein A1 [Genlisea filiformis] >AUN28382.1 photosystem I P700 apoprotein A1 [Genlisea filiformis])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. NCBI nr
Match: YP_009466402.1 (photosystem I P700 apoprotein A1 [Genlisea pygmaea] >YP_009466477.1 photosystem I P700 apoprotein A1 [Genlisea repens] >AUN28457.1 photosystem I P700 apoprotein A1 [Genlisea pygmaea] >AUN28532.1 photosystem I P700 apoprotein A1 [Genlisea repens])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. NCBI nr
Match: QGT34356.1 (photosystem I P700 apoprotein A1 [Utricularia amethystina])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. NCBI nr
Match: QRW36727.1 (photosystem I P700 apoprotein A1 [Stellaria dichotoma var. lanceolata] >QVL27513.1 photosystem I P700 apoprotein A1 [Stellaria dichotoma var. lanceolata])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 66  PEKSMPMNT--TSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           P  + P+ T  TSLTWGGGDLVAVGGKVALLPIPLGTADFL+H +H
Sbjct: 492 PSATAPVATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLIHHIH 537

[Close]

BLAST of Bhi03G000081 vs. NCBI nr
Match: QBC73343.1 (photosystem I P700 apoprotein A1 [Cerastium arvense] >QUG09806.1 photosystem I P700 apoprotein A1 [Pseudocerastium stellarioides])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 66  PEKSMPMNT--TSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           P  + P+ T  TSLTWGGGDLVAVGGKVALLPIPLGTADFL+H +H
Sbjct: 492 PSATAPVATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLIHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL
Match: A0A411D865 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pseudostellaria palibiniana OX=1137891 GN=psaA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 66  PEKSMPMNT--TSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           P  + P+ T  TSLTWGGGDLVAVGGKVALLPIPLGTADFL+H +H
Sbjct: 492 PSATAPVATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLIHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL
Match: A0A650DPY4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Utricularia amethystina OX=192273 GN=psaA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL
Match: A0A2I6QDC4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Genlisea filiformis OX=700924 GN=psaA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL
Match: A0A1S6JNC6 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Utricularia foliosa OX=1896641 GN=psaA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

[Close]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL
Match: W1IK65 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinguicula ehlersiae OX=192264 GN=psaA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 72  MNTTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHEVH 110
           M +TSLTWGGGDLVAVGGKVALLPIPLGTADFLVH +H
Sbjct: 500 MASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIH 537

The following BLAST results are available for this feature:

BLAST of Bhi03G000081 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	3.6e-13	88.89	Photosystem I, PsaA/PsaB protein	[more]

BLAST of Bhi03G000081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70Y03	1.7e-12	91.67	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
Q8S8X4	1.7e-12	91.67	Photosystem I P700 chlorophyll a apoprotein A1 OS=Atropa belladonna OX=33113 GN=...	[more]
Q7YJX2	1.7e-12	91.67	Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau...	[more]
A0A335	1.7e-12	91.67	Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica OX=13443 GN=psa...	[more]
Q9MUK0	1.7e-12	91.67	Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cycas revoluta OX=3...	[more]

BLAST of Bhi03G000081 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009466327.1	6.0e-10	89.47	photosystem I P700 apoprotein A1 [Genlisea filiformis] >AUN28382.1 photosystem I...	[more]
YP_009466402.1	6.0e-10	89.47	photosystem I P700 apoprotein A1 [Genlisea pygmaea] >YP_009466477.1 photosystem ...	[more]
QGT34356.1	6.0e-10	89.47	photosystem I P700 apoprotein A1 [Utricularia amethystina]	[more]
QRW36727.1	6.0e-10	76.09	photosystem I P700 apoprotein A1 [Stellaria dichotoma var. lanceolata] >QVL27513...	[more]
QBC73343.1	6.0e-10	76.09	photosystem I P700 apoprotein A1 [Cerastium arvense] >QUG09806.1 photosystem I P...	[more]

BLAST of Bhi03G000081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A411D865	2.9e-10	76.09	Photosystem I P700 chlorophyll a apoprotein A1 OS=Pseudostellaria palibiniana OX...	[more]
A0A650DPY4	2.9e-10	89.47	Photosystem I P700 chlorophyll a apoprotein A1 OS=Utricularia amethystina OX=192...	[more]
A0A2I6QDC4	2.9e-10	89.47	Photosystem I P700 chlorophyll a apoprotein A1 OS=Genlisea filiformis OX=700924 ...	[more]
A0A1S6JNC6	2.9e-10	89.47	Photosystem I P700 chlorophyll a apoprotein A1 OS=Utricularia foliosa OX=1896641...	[more]
W1IK65	2.9e-10	89.47	Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinguicula ehlersiae OX=192264...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 37..109 e-value: 3.9E-8 score: 32.0
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 22..113 e-value: 2.3E-8 score: 34.6
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 74..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M000081	Bhi03M000081	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding