Bhi02G001567 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G001567
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	TTF-type domain-containing protein
Location	chr2: 50920088 .. 50920436 (-)
RNA-Seq Expression	Bhi02G001567
Synteny	Bhi02G001567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAACTTCAAAATTATTGTTGATATGCATTCAAATATTGAGTTTGTTGAGCTAAAAAGCATATGTGATCTTGCAGTAAAAATGATCCTAACGAATAAAGACAAAGTCTATCCATTAGTTTACAAATTACTCACCTTGAAGTTGATTTTACCTGTCGCCATAGCTACTGTAGAGAGAACATTTTCTGCTATGTATATTATGAAGATTCGATTGCGTAATCAAATATTAGATTAATGGATGAATGATTGTCTTATAGCCTATATTGAAAAGGATTTATTTAATAAGTTAGATATTGAAGTTATCATGGATCGATTTCAAAACATGAAAACTCGTAGAGGGCAATTGCAAT

mRNA sequence

ATCAACTTCAAAATTATTGTTGATATGCATTCAAATATTGAGTTTGTTGAGCTAAAAAGCATATGTGATCTTGCAGTAAAAATGATCCTAACGAATAAAGACAAAGTCTATCCATTAGTTTACAAATTACTCACCTTGAAGTTGATTTTACCTGTCGCCATAGCTACTGTAGAGAGAACATTTTCTGCTATGTATATTATGAAGATTCGATTGCCCTATATTGAAAAGGATTTATTTAATAAGTTAGATATTGAAGTTATCATGGATCGATTTCAAAACATGAAAACTCGTAGAGGGCAATTGCAAT

Coding sequence (CDS)

ATCAACTTCAAAATTATTGTTGATATGCATTCAAATATTGAGTTTGTTGAGCTAAAAAGCATATGTGATCTTGCAGTAAAAATGATCCTAACGAATAAAGACAAAGTCTATCCATTAGTTTACAAATTACTCACCTTGAAGTTGATTTTACCTGTCGCCATAGCTACTGTAGAGAGAACATTTTCTGCTATGTATATTATGAAGATTCGATTGCCCTATATTGAAAAGGATTTATTTAATAAGTTAGATATTGAAGTTATCATGGATCGATTTCAAAACATGAAAACTCGTAGAGGGCAATTGCAAT

Protein sequence

INFKIIVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMYIMKIRLPYIEKDLFNKLDIEVIMDRFQNMKTRRGQLQ

Homology

[Close]

BLAST of Bhi02G001567 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-11
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 4   KIIVDMHSNIE-FVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFS 63
           +I +D   N E F +LK + DLA  M+ T K   +PLVY+LL + LILPVA ATVER FS
Sbjct: 657 EIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFS 716

Query: 64  AMYIMKIRLP--------------YIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           AM  +K  L               +IEK   N +  E ++ RFQ+M  RR  L
Sbjct: 717 AMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTVTNESVIKRFQDMSERRVHL 769

[Close]

BLAST of Bhi02G001567 vs. TAIR 10
Match: AT3G29765.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-10
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 4   KIIVDMHSNIE-FVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFS 63
           +I +D   N E F +L+ + DLA  M+ T K   +PLVY+LL L LILPVA ATV R FS
Sbjct: 424 EIYLDNVKNDERFTDLEHLGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVVRCFS 483

Query: 64  AMYIMKIRLP--------------YIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           AM  +K  L               +IEK + N +  E ++ RFQ+M  RR  L
Sbjct: 484 AMNFVKTTLRNRFGDVFLSDCLVCFIEKQVLNTVTNESVIKRFQDMSERRVHL 536

[Close]

BLAST of Bhi02G001567 vs. TAIR 10
Match: AT2G06541.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I ++  +  F  LKS+ DLA  MI T K   +P VY+LL + L LP+A ATVER FSA  
Sbjct: 484 IDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSATV 543

Query: 66  I---MKIRLP----------YIEKDLFNKLDIEVIMDRFQNMKTR 98
           +   ++ R+            ++++LF+ +  +V++ RFQ+M+ R
Sbjct: 544 VKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENR 588

[Close]

BLAST of Bhi02G001567 vs. TAIR 10
Match: AT2G06541.2 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I ++  +  F  LKS+ DLA  MI T K   +P VY+LL + L LP+A ATVER FSA  
Sbjct: 456 IDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSATV 515

Query: 66  I---MKIRLP----------YIEKDLFNKLDIEVIMDRFQNMKTR 98
           +   ++ R+            ++++LF+ +  +V++ RFQ+M+ R
Sbjct: 516 VKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENR 560

[Close]

BLAST of Bhi02G001567 vs. TAIR 10
Match: AT4G09660.1 (CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast hits to 796 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 4   KIIVDMHSNIE-FVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFS 63
           +I +D   N E F +LK   DLA  M+ T K   +PLVY+LL L LILPVA ATVER FS
Sbjct: 601 EIYLDNVKNDERFTDLKCFGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVERCFS 660

Query: 64  AM 65
           AM
Sbjct: 661 AM 662

[Close]

BLAST of Bhi02G001567 vs. NCBI nr
Match: XP_021829887.1 (uncharacterized protein LOC110770113 [Prunus avium])

HSP 1 Score: 117.9 bits (294), Expect = 5.3e-23
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I D+ SN +F ELK I DLA KM+ TNKDK+YPLVY LLTL LILPVA A+VER FSAM 
Sbjct: 307 IWDVSSNNQFTELKGITDLAQKMVETNKDKIYPLVYLLLTLALILPVATASVERVFSAMN 366

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+FN +D EV+M RFQNMKTRRGQL
Sbjct: 367 IVKNRLRNRIGDLWMNDCLVAYIEKDIFNSIDDEVVMQRFQNMKTRRGQL 416

[Close]

BLAST of Bhi02G001567 vs. NCBI nr
Match: XP_024155975.1 (zinc finger MYM-type protein 1-like [Rosa chinensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           IVDM SNIEF ELK I DLA KM+ T KD  YPLVY LLTL LILPVA A+VER FSAM 
Sbjct: 683 IVDMRSNIEFFELKGITDLAKKMVQTKKDVTYPLVYLLLTLALILPVATASVERVFSAMN 742

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+F  +D E IM RFQNMK+RRGQL
Sbjct: 743 IVKTRLRSRMGDEFMNDCLISYIEKDIFTSIDDEAIMQRFQNMKSRRGQL 792

[Close]

BLAST of Bhi02G001567 vs. NCBI nr
Match: XP_021827657.1 (zinc finger MYM-type protein 1-like [Prunus avium])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I D+ SN EF ELK I DLA KM+ TNKDK+YPLVY LLTL LIL VA A+VER FSAM 
Sbjct: 355 IWDVSSNNEFTELKGISDLAQKMVETNKDKIYPLVYLLLTLALILSVATASVERVFSAMN 414

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+FN +D EV+M RFQNMKTRRGQL
Sbjct: 415 IVKNRLRNRMGDLWMNDSLVAYIEKDIFNSIDDEVVMQRFQNMKTRRGQL 464

[Close]

BLAST of Bhi02G001567 vs. NCBI nr
Match: XP_024172313.1 (zinc finger MYM-type protein 1-like [Rosa chinensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           IVDM SNIEF ELK I DLA KM+ T KD  YPLVY LLTL LILPVA A+VER FSAM 
Sbjct: 683 IVDMRSNIEFFELKGITDLAKKMVQTKKDVTYPLVYLLLTLALILPVATASVERVFSAMN 742

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+F  +D E IM RFQNMK+RRGQL
Sbjct: 743 IVKTRLRSRMGDEFMNDCLISYIEKDIFTSIDDEAIMQRFQNMKSRRGQL 792

[Close]

BLAST of Bhi02G001567 vs. NCBI nr
Match: KAA0066112.1 (Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I+DM S  EFVELKSI DLAVKM++T +DKVY LVY+LLTL LILPVA  T+ERTFSAM 
Sbjct: 45  IIDMRS--EFVELKSIGDLAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMN 104

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           ++K RL               YIEKDL +KLD ++IMDRFQ MKTR+GQL
Sbjct: 105 VVKTRLRNRIGDQWMNDCLIAYIEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL
Match: A0A6P5TRY7 (uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I D+ SN +F ELK I DLA KM+ TNKDK+YPLVY LLTL LILPVA A+VER FSAM 
Sbjct: 307 IWDVSSNNQFTELKGITDLAQKMVETNKDKIYPLVYLLLTLALILPVATASVERVFSAMN 366

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+FN +D EV+M RFQNMKTRRGQL
Sbjct: 367 IVKNRLRNRIGDLWMNDCLVAYIEKDIFNSIDDEVVMQRFQNMKTRRGQL 416

[Close]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL
Match: A0A6P5TKH2 (zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.7e-23
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I D+ SN EF ELK I DLA KM+ TNKDK+YPLVY LLTL LIL VA A+VER FSAM 
Sbjct: 355 IWDVSSNNEFTELKGISDLAQKMVETNKDKIYPLVYLLLTLALILSVATASVERVFSAMN 414

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+FN +D EV+M RFQNMKTRRGQL
Sbjct: 415 IVKNRLRNRMGDLWMNDSLVAYIEKDIFNSIDDEVVMQRFQNMKTRRGQL 464

[Close]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL
Match: A0A5A7VCQ2 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00160 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 69/110 (62.73%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I+DM S  EFVELKSI DLAVKM++T +DKVY LVY+LLTL LILPVA  T+ERTFSAM 
Sbjct: 45  IIDMRS--EFVELKSIGDLAVKMVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMN 104

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           ++K RL               YIEKDL +KLD ++IMDRFQ MKTR+GQL
Sbjct: 105 VVKTRLRNRIGDQWMNDCLIAYIEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL
Match: A0A1S3C638 (uncharacterized protein LOC103496885 OS=Cucumis melo OX=3656 GN=LOC103496885 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-20
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I+D+ S  +FVELKSI D+AVKM++T + K+YPLVY+LLTL LIL +AIATVERTFSAM 
Sbjct: 140 IIDIRS--KFVELKSIGDIAVKMVVTKRYKIYPLVYRLLTLALILLIAIATVERTFSAMN 199

Query: 66  IMKIRL-----PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL         KDL NKLD + IMDRFQNM+TR GQL
Sbjct: 200 IVKTRLHNRMGDQWMKDLLNKLDNKHIMDRFQNMRTRTGQL 238

[Close]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL
Match: A0A2N9J031 (TTF-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57563 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 6   IVDMHSNIEFVELKSICDLAVKMILTNKDKVYPLVYKLLTLKLILPVAIATVERTFSAMY 65
           I D+ S+IEF +L+ ICDLA KM+ T K+ VYPLVY L+TL L LPVA ATVER FSAM 
Sbjct: 608 IFDVRSSIEFSKLEGICDLAQKMVETKKNVVYPLVYLLVTLALTLPVATATVERAFSAMK 667

Query: 66  IMKIRL--------------PYIEKDLFNKLDIEVIMDRFQNMKTRRGQL 102
           I+K RL               YIEKD+F+ +D E IM RFQNMKTRR QL
Sbjct: 668 IVKNRLRSRMSDQWMNDSLIVYIEKDIFHSIDNEAIMQRFQNMKTRRNQL 717

The following BLAST results are available for this feature:

BLAST of Bhi02G001567 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19260.1	8.4e-11	42.48	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G29765.1	4.2e-10	41.59	General transcription factor 2-related zinc finger protein	[more]
AT2G06541.1	1.9e-07	36.19	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT2G06541.2	1.9e-07	36.19	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT4G09660.1	1.9e-07	56.45	CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Ara...	[more]

BLAST of Bhi02G001567 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi02G001567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021829887.1	5.3e-23	62.73	uncharacterized protein LOC110770113 [Prunus avium]	[more]
XP_024155975.1	2.0e-22	62.73	zinc finger MYM-type protein 1-like [Rosa chinensis]	[more]
XP_021827657.1	2.0e-22	62.73	zinc finger MYM-type protein 1-like [Prunus avium]	[more]
XP_024172313.1	2.0e-22	62.73	zinc finger MYM-type protein 1-like [Rosa chinensis]	[more]
KAA0066112.1	2.6e-22	62.73	Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 D...	[more]

BLAST of Bhi02G001567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5TRY7	2.6e-23	62.73	uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE...	[more]
A0A6P5TKH2	9.7e-23	62.73	zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=...	[more]
A0A5A7VCQ2	1.3e-22	62.73	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3C638	3.4e-20	64.36	uncharacterized protein LOC103496885 OS=Cucumis melo OX=3656 GN=LOC103496885 PE=...	[more]
A0A2N9J031	4.5e-20	58.18	TTF-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57563...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 32..67 e-value: 4.5E-5 score: 23.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001567	Bhi02M001567	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0046983	protein dimerization activity