Bhi02G001249 (gene) Wax gourd (B227) v1

Overview
NameBhi02G001249
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr2: 39714816 .. 39715001 (-)
RNA-Seq ExpressionBhi02G001249
SyntenyBhi02G001249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAGGTATACAAATCTTAGATCATTTGAGTATTCTCAATGGCATCGTTTCTGAGTTGGAGGCGATAAGAGTGAAGATAGAAGATGAAGATAAGGCACTCGGACTCATCTGGTCATTTGCCTCCTTTTATGAACACATGAAGCCAATCTTGATATACGGGAAGGACATTAGAGTTTGTTGA

mRNA sequence

ATGGTGGAAGGTATACAAATCTTAGATCATTTGAGTATTCTCAATGGCATCGTTTCTGAGTTGGAGGCGATAAGAGTGAAGATAGAAGATGAAGATAAGGCACTCGGACTCATCTGGTCATTTGCCTCCTTTTATGAACACATGAAGCCAATCTTGATATACGGGAAGGACATTAGAGTTTGTTGA

Coding sequence (CDS)

ATGGTGGAAGGTATACAAATCTTAGATCATTTGAGTATTCTCAATGGCATCGTTTCTGAGTTGGAGGCGATAAGAGTGAAGATAGAAGATGAAGATAAGGCACTCGGACTCATCTGGTCATTTGCCTCCTTTTATGAACACATGAAGCCAATCTTGATATACGGGAAGGACATTAGAGTTTGTTGA

Protein sequence

MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKDIRVC
Homology
[Close]
BLAST of Bhi02G001249 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 23/56 (41.07%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGK 57
           M EG   L HL++ NG++++L  + VKIE+EDKA+ L+ S  S Y+++   +++GK
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK 167

[Close]
BLAST of Bhi02G001249 vs. NCBI nr
Match: PON72378.1 (Zinc finger, CCHC-type [Trema orientale])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
           M EG  I DHLSILNGIV ELEAI VKI+DEDKAL LIWS  S YEHMKPIL+YGK+
Sbjct: 48  MSEGTTISDHLSILNGIVFELEAIGVKIDDEDKALRLIWSLPSSYEHMKPILVYGKE 104

[Close]
BLAST of Bhi02G001249 vs. NCBI nr
Match: PON56879.1 (hypothetical protein TorRG33x02_294980 [Trema orientale])

HSP 1 Score: 87.0 bits (214), Expect = 6.0e-14
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
           M EG +I DHLS+LNGIVSELEAI VKIEDEDKAL  IWS    YEHMKPIL++GK+
Sbjct: 66  MNEGTKISDHLSVLNGIVSELEAIGVKIEDEDKALRFIWSIPPSYEHMKPILVHGKE 122

[Close]
BLAST of Bhi02G001249 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
           M EG  I DHLS+LNGIVSELE+I VKI+DED+AL LIWS  S YEHMKPILI+GK+
Sbjct: 132 MSEGTTISDHLSVLNGIVSELESIGVKIDDEDQALRLIWSLPSSYEHMKPILIHGKE 188

[Close]
BLAST of Bhi02G001249 vs. NCBI nr
Match: PON42219.1 (Zinc finger, CCHC-type [Trema orientale])

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
          M EG  ILDHLS+LN IVSELEAIRVK +DEDKAL LIWS  S YEHMKPIL+Y K+
Sbjct: 1  MSEGTAILDHLSVLNVIVSELEAIRVKTDDEDKALRLIWSLPSSYEHMKPILMYKKE 57

[Close]
BLAST of Bhi02G001249 vs. NCBI nr
Match: PON84950.1 (Zinc finger, CCHC-type [Trema orientale])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
          M EG  I DHL ILNGIVSELEAI VKI+DEDKAL LIWS  S YEHMK IL+YGK+
Sbjct: 1  MSEGTTISDHLGILNGIVSELEAIGVKIDDEDKALRLIWSLPSSYEHMKLILVYGKE 57

[Close]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match: A0A2P5DGF9 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_251760 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
           M EG  I DHLSILNGIV ELEAI VKI+DEDKAL LIWS  S YEHMKPIL+YGK+
Sbjct: 48  MSEGTTISDHLSILNGIVFELEAIGVKIDDEDKALRLIWSLPSSYEHMKPILVYGKE 104

[Close]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match: A0A2P5C765 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_294980 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-14
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1   MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
           M EG +I DHLS+LNGIVSELEAI VKIEDEDKAL  IWS    YEHMKPIL++GK+
Sbjct: 66  MNEGTKISDHLSVLNGIVSELEAIGVKIEDEDKALRFIWSIPPSYEHMKPILVHGKE 122

[Close]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match: A0A2P5B098 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_336270 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-14
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
          M EG  ILDHLS+LN IVSELEAIRVK +DEDKAL LIWS  S YEHMKPIL+Y K+
Sbjct: 1  MSEGTAILDHLSVLNVIVSELEAIRVKTDDEDKALRLIWSLPSSYEHMKPILMYKKE 57

[Close]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match: A0A2P5EHD2 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_192020 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.4e-14
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
          M EG  I DHL ILNGIVSELEAI VKI+DEDKAL LIWS  S YEHMK IL+YGK+
Sbjct: 1  MSEGTTISDHLGILNGIVSELEAIGVKIDDEDKALRLIWSLPSSYEHMKLILVYGKE 57

[Close]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match: A0A2P5EL18 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_180730 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.4e-14
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  MVEGIQILDHLSILNGIVSELEAIRVKIEDEDKALGLIWSFASFYEHMKPILIYGKD 58
          M EG +I DHLS+LN IVS+LEAI V IEDEDKAL  IWS   FYEH+KPIL+YGK+
Sbjct: 1  MNEGTKIFDHLSVLNSIVSKLEAIGVNIEDEDKALRFIWSLPPFYEHIKPILVYGKE 57

The following BLAST results are available for this feature:
BLAST of Bhi02G001249 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi02G001249 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109781.2e-0641.07Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Bhi02G001249 vs. NCBI nr
Match NameE-valueIdentityDescription
PON72378.11.6e-1477.19Zinc finger, CCHC-type [Trema orientale][more]
PON56879.16.0e-1473.68hypothetical protein TorRG33x02_294980 [Trema orientale][more]
KAF5463231.17.8e-1473.68hypothetical protein F2P56_019161 [Juglans regia][more]
PON42219.17.8e-1475.44Zinc finger, CCHC-type [Trema orientale][more]
PON84950.11.3e-1375.44Zinc finger, CCHC-type [Trema orientale][more]
BLAST of Bhi02G001249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5DGF97.6e-1577.19Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_251760 PE=4 SV=... [more]
A0A2P5C7652.9e-1473.68Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_294980 PE=4 SV... [more]
A0A2P5B0983.8e-1475.44Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_336270 PE=4 SV=... [more]
A0A2P5EHD26.4e-1475.44Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_192020 PE=4 SV=... [more]
A0A2P5EL188.4e-1470.18Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_180730 PE=4 SV=... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi02M001249Bhi02M001249mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0008270 zinc ion binding